Dataset Overview
RBP
HNRNPF
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR693MZJ
Platform
HiSeq
Pubmed ID
32252787
HNRNPF - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of HNRNPF
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A2M-AS1
0.33
1.09
1.49330
4.34371E-06
1.52287E-05
A4GALT
0.85
0.14
-2.36170
2.89737E-07
1.20963E-06
AAAS
25.65
46.67
0.58375
2.80034E-10
1.79992E-09
AADAT
4.81
7.22
0.38720
0.00193
0.00418
AAED1
6.5
3.59
-1.04057
5.12080E-16
6.20863E-15
AARS
64.38
58.43
-0.25062
0.00733
0.01386
AARS2
4.86
8.28
0.57348
2.24180E-08
1.09031E-07
AASDHPPT
18.09
14.5
-0.23750
0.02621
0.04369
AASS
8.55
14.83
0.59690
2.08811E-09
1.17992E-08
AATK
1.82
3.16
0.82494
3.02995E-08
1.44431E-07
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Function Analysis of Target Genes of HNRNPF
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
No data available in table
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
16529004
A
C
3.00007E-07
ARHGEF19
-
FALSE
chr1
109746745
A
G
0.00073
KIAA1324
+
TRUE
AluJb
SINE,Alu
chr1
153920564
A
G
0.00057
CRTC2
-
FALSE
chr1
14150032
C
T
0.00163
PRDM2
+
FALSE
chr1
46774813
C
G
0.00766
UQCRH
+
FALSE
chr1
143189473
C
A
0.00626
LOC102723769
-
FALSE
chr1
6582498
T
C
0.00403
NOL9
-
TRUE
AluSx1
SINE,Alu
chr1
10517653
T
C
0.00475
.
FALSE
AluSx1
SINE,Alu
chr1
118420452
C
G
0.00713
GDAP2
-
FALSE
chr1
148004422
T
A
0.00017
NBPF8
-
FALSE
Showing 1 to 10 of 476 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression