Dataset Overview
RBPDDX24
Knock-MethodshRNA
RBP FamilyDEAD
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR067LLB
PlatformHiSeq
Pubmed ID32252787

DDX24 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of DDX24
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of DDX24


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr319992312AG0.00798RAB5A+FALSE
chr1114515717GA0.00018HIPK1+FALSE
chr345721989AG0.00713LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr119953124GA0.00106MINOS1,MINOS1-NBL1+FALSE
chr128661767AG0.00242MED18+TRUEAluSgSINE,Alu
chr16684050GA2.21294E-05PHF13+FALSE
chr126774225AG0.00614DHDDS+TRUEAluSz6SINE,Alu
chr1145512937AG0.00443NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr110520202TC0.00529.FALSEAluSxSINE,Alu
chr4189020293GA0.00361TRIML2-FALSE
chr237506939AG0.00119PRKD3-FALSE
chr116889217GC0.00696NBPF1-FALSEL1MC4SINE,Alu
chr314986200GT0.00346FGD5-AS1-FALSEAluSq2SINE,Alu
chr162627128AG0.00087PATJ+TRUEAluSxSINE,Alu
chr595130803TC0.00531RHOBTB3+FALSEAluSzSINE,Alu
chr1469254646TC0.00181ZFP36L1-FALSE
chr9115447528TC0.00112INIP-TRUEAluJbSINE,Alu
chr2112252629AC0.00107MIR4435-2HG-FALSE
chrX77083007TC0.00371MAGT1-TRUEAluSgSINE,Alu
chr12123253723AG0.00371DENR+TRUE(AT)nSINE,Alu
chr19162348TC0.00824.FALSEAluSxSINE,Alu
chr136068196TC0.00376PSMB2-TRUEAluScSINE,Alu
chr2209180073CA0.00478PIKFYVE+FALSE
chr1431916783TC3.40362E-05LOC101927124,DTD2+,-FALSEAluSc8SINE,Alu
chr4155457601TC0.00423PLRG1-FALSE
chr1120267061CA0.00181PHGDH+FALSE
chr5154194459CA0.00556LARP1+FALSE
chr1457879959GA0.00144.FALSE
chr2206862015GA0.00368INO80D-FALSE
chr2188385337CT0.00210TFPI-FALSEL1MC3SINE,Alu
chr1745761102TG0.00296.FALSE
chr10101992425TC0.00406CWF19L1-TRUEAluSq2SINE,Alu
chr2217366192TA0.00067.FALSE
chr1778091513GA0.00810GAA+FALSE
chr232535287AG0.00891.FALSEFLAM_CSINE,Alu
chr132799436CT0.00490MARCKSL1-FALSE
chr3113528892AT8.78648E-05ATP6V1A+FALSEAluSpSINE,Alu
chr136067925TC1.59250E-07PSMB2-TRUEAluSzSINE,Alu
chr255516090CT0.00643CCDC88A-FALSE
chr140214148AG0.00426PPIE+TRUEAluSq2SINE,Alu
chr613788342TC0.00048MCUR1-TRUEAluSxSINE,Alu
chr16282401TC0.00806ICMT-TRUEAluSzSINE,Alu
chr1205683408CT0.00082NUCKS1-FALSE
chr1160990906GA0.00270F11R-FALSE
chr11337334GT0.00549LOC148413,MRPL20+,-FALSE
chr5149823786CT0.00327.FALSE
chr5112350098CT7.36383E-05DCP2+FALSE
chr199164434GA0.00309SNX7+FALSE
chr3195694448CT0.00289SDHAP1-FALSE
chr1149943157GA0.00024OTUD7B-FALSE
chr1204189357CT0.00835PLEKHA6-FALSE
chr146075791AG0.00120NASP+TRUEAluSx4SINE,Alu
chr690344605TC0.00013LYRM2-TRUEAluSz6SINE,Alu
chr153289759AG0.00329ZYG11B+TRUEAluSzSINE,Alu
chr12123347005TA0.00268HIP1R+FALSE
chr5125961468AG2.27854E-07PHAX+TRUEAluSz6SINE,Alu
chr3179117033TC0.00019GNB4-TRUEAluSzSINE,Alu
chr223926233CT0.00907KLHL29+FALSE
chr1939433140GT0.00260FBXO17-FALSEAluJbSINE,Alu
chr811701458TC1.82355E-06CTSB-TRUEAluSx1SINE,Alu
chr118707396CA0.00081RPL27A+FALSE
chr116891333CT0.00011NBPF1-FALSE
chr1586288387CT0.00809AKAP13+FALSE
chr42940265TC4.71601E-06NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr1220323448CT0.00986RAB3GAP2-FALSE
chr1610626624TC0.00334EMP2-FALSE(T)nSINE,Alu
chr136067925TC3.39837E-06PSMB2-TRUEAluSzSINE,Alu
chr220401859AT0.00023SDC1-FALSE(A)nSINE,Alu
chr133148736AG4.97736E-05SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr579279309TG0.00167MTX3-FALSE
chr5110463616GT0.00264WDR36+FALSE(T)nSINE,Alu
chr2176042865GT0.00887ATP5G3-FALSE
chr1109818161CT6.45247E-05CELSR2+FALSE
chr1153609268GA0.00263CHTOP+FALSE
chr133149260AG0.00143SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr275120158AT0.00222HK2+FALSE
chr167874697TC0.00190SERBP1-TRUEAluSx3SINE,Alu
chr2035521047TA0.00064TLDC2,SAMHD1+,-FALSE
chr237330368TC0.00069.FALSEAluSq2SINE,Alu
chr136067760TC1.59237E-06PSMB2-TRUEAluSzSINE,Alu
chr122445725CG0.00913WNT4-FALSE
chr116889414TC0.00679NBPF1-TRUEL1MC4SINE,Alu
chr116889127AG0.00213NBPF1-FALSEL1MC4SINE,Alu
chr11110128567AT0.00634RDX-FALSE
chr2128952015AG0.00908UGGT1+TRUEAluSx1SINE,Alu
chr12109887765TG0.00091KCTD10-FALSE
chr298090925TC0.00056LOC100506076-FALSEL1PREC2SINE,Alu
chr63021352TC0.00082HTATSF1P2-TRUEAluJr4SINE,Alu
chr457327017AG4.29594E-07PAICS+TRUEAluSx1SINE,Alu
chr652860743TG1.89710E-05.FALSE7SKSINE,Alu
chr126604691GC0.00043CEP85+FALSE
chr43514539GA6.66134E-16LRPAP1-FALSE
chr3183900729TC0.00074AP2M1+FALSEMIR3SINE,Alu
chr634231288AG0.00143.FALSE
chr173512398TC0.00709SHPK,TRPV1-TRUEAluSxSINE,Alu
chr19294903CG0.00353H6PD+FALSE
chr344790624TC0.00150KIAA1143-TRUEAluYSINE,Alu
chr162380298GA0.00025PATJ+FALSE
chr1145511797TG0.00894NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSE(T)nSINE,Alu
chr980888613AG0.00904.FALSEAluSxSINE,Alu
chr126755175GC0.00211LIN28A+FALSEAluSx1SINE,Alu
chr1942375624AG0.00049.FALSEAluSxSINE,Alu
chr144818529TC0.00310ERI3-FALSE
chr110517314TC0.00288.FALSEAluJrSINE,Alu
chr644417159AG0.00959CDC5L+TRUEFLAM_CSINE,Alu
chr6159395409TC0.00136.FALSE
chr2208620129AG0.00061CCNYL1+TRUEEutTc1-N1SINE,Alu
chr1185014720AG0.00989RNF2+FALSE
chr4120219638AT0.00970C4orf3-FALSE
chr114599TA0.00304WASH7P-FALSE
chr3100467676AT0.00288TFG+FALSE
chr116891365GA1.42078E-05NBPF1-FALSE
chr2218571431AG0.00158PEX26+TRUEAluSzSINE,Alu
chr744841489AG0.00015PPIA+TRUEAluJrSINE,Alu
chr1144596446AG0.00124NBPF20+TRUEAluJbSINE,Alu
chr1205687341CT0.00494NUCKS1-FALSE(T)nSINE,Alu
chr457326159AG0.00019PAICS+TRUEAluJrSINE,Alu
chr1167782827GA0.00163ALDH3B1+FALSE
chr1144932151GT0.00643NBPF20,PDE4DIP+,-FALSE
chr1948753070TC0.00214CARD8-TRUE
chr131346203AC0.00050SDC3-FALSE
chr128825337AG0.00313PHACTR4+TRUEAluSgSINE,Alu
chr1120612037TG0.00044NOTCH2-FALSE(CGC)nSINE,Alu
chr153289686AG0.00063ZYG11B+TRUEAluSzSINE,Alu
chr1469704553GT7.62587E-05EXD2+FALSE
chr16281866AC0.00102ICMT-FALSE
chr16713251AG0.00628WDR90+TRUEAluSxSINE,Alu
chr1475202856AG3.12821E-09FCF1+TRUEAluSxSINE,Alu
chr11534614TC5.67045E-11FNDC10-FALSE
chr5125961810AG3.92353E-06PHAX+TRUEFLAM_CSINE,Alu
chr3107765392GA0.00038CD47-FALSE
chr1160965379TC0.00010F11R-TRUEAluScSINE,Alu
chr2242176182GA2.43141E-09HDLBP-FALSE
chr1541591039AG0.00214OIP5-AS1+TRUEAluSx1SINE,Alu
chr543377330TC0.00039CCL28-TRUEAluSzSINE,Alu
chr121904374AC0.00198ALPL+FALSE
chr417804279GA0.00606DCAF16-FALSE(A)nSINE,Alu
chr225962253AT0.00784ASXL2-FALSE
chr11650797AG0.00325CDK11B,CDK11A-FALSE
chr136535560AG0.00059.FALSEAluSx1SINE,Alu
chr398517013TC1.12976E-12DCBLD2-FALSE
chr153289892AG0.00178ZYG11B+TRUEFRAMSINE,Alu
chr1946053370TC0.00045OPA3-TRUEAluSx1SINE,Alu
chr1942375585AG0.00022.FALSEAluSxSINE,Alu
chr1765334846TC0.00456PSMD12-FALSEAluSqSINE,Alu
chr5130538043AG0.00713LYRM7+TRUEAluSpSINE,Alu
chr112024235CT0.00395PLOD1+FALSE
chr123835794AG0.00132E2F2-FALSE
chr1144619903TA0.00712NBPF20,NBPF9+FALSE
chr165692498TC0.00356AK4+FALSE(T)nSINE,Alu
chr1108728562AT0.00228SLC25A24-FALSE
chr29629293TG0.00426ADAM17-FALSE(TGT)nSINE,Alu
chr1590819619AG5.14004E-06.FALSEAluSxSINE,Alu
chr11650832AG0.00241CDK11B,CDK11A-FALSE
chr1200375005AT0.00202ZNF281-FALSE
chr629912348AG0.00429.FALSE
chr121100862CA0.00012HP1BP3-FALSE(AC)nSINE,Alu
chr136068325TC5.92205E-06PSMB2-TRUEAluScSINE,Alu
chr110517512TC0.00514.FALSEAluSx1SINE,Alu
chr1168220479AG0.00113.FALSEAluSz6SINE,Alu
chr5478174CT0.00392SLC9A3,LOC100288152+,-FALSE
chr2190617700TC1.38394E-05OSGEPL1-FALSE
chr1146649884TA0.00338PDIA3P1+FALSE
chr1921302045AG0.00020ZNF714+TRUEAluSg4SINE,Alu
chr1169768080CA5.53708E-05C1orf112+FALSE
chr174929004AG0.00030KIF1C+TRUEAluYSINE,Alu
chr1145499276CT0.00581NBPF20,NBPF10,LIX1L+FALSE
chr63022725TC0.00081HTATSF1P2-TRUEAluSzSINE,Alu
chr136068370TC0.00846PSMB2-TRUEAluScSINE,Alu
chr1156219450AG0.00753SMG5-FALSE
chr119542464TC0.00140LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1298943202AG6.48893E-05TMPO+TRUEAluSzSINE,Alu
chr1152187945CT9.69718E-05HRNR-FALSE(GCCAGA)nSINE,Alu
chr1946052975TC0.00652OPA3-TRUEAluSz6SINE,Alu
chr1143399383TA0.00198.FALSEL1MC4SINE,Alu
chr2128950515AG0.00052UGGT1+TRUEAluScSINE,Alu
chr1231557138CG0.00394EGLN1-FALSE
chr1146650091CA0.00361PDIA3P1+FALSE
chr1153907287GC0.00122DENND4B-FALSE(CTG)nSINE,Alu
chr357548976AG0.00132PDE12+TRUEFRAMSINE,Alu
chr1146033660CA0.00091NBPF20,NBPF10,NBPF25P,NBPF11+,-FALSE
chr345721922AG0.00181LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr11683565GA0.00552NADK-FALSE
chr314986137TC0.00132FGD5-AS1-TRUEFLAM_CSINE,Alu
chr116928126GC0.00958NBPF1-FALSEMLT1E3SINE,Alu
chr357199227AC0.00638IL17RD-FALSE
chr110438006AT6.81521E-05KIF1B+FALSEAluSgSINE,Alu
chr74809089AG0.00552FOXK1+TRUEAluSx1SINE,Alu
chr1165544381TC0.00433AP5B1-TRUEAluJbSINE,Alu
chr3181430454GA0.00577SOX2-OT,SOX2+FALSE
chr127861184GT0.00425AHDC1-FALSE(TCTTTT)nSINE,Alu
chr110520331CT0.00060.FALSEAluSx1SINE,Alu
chr372426071TA0.00169RYBP-FALSE(T)nSINE,Alu
chr133071096AG0.00139ZBTB8A+TRUEAluSx1SINE,Alu
chr1963721TG0.00602WASH5P-FALSE
chr16283264TC0.00284ICMT-TRUEAluSx3SINE,Alu
chr735840866AG0.00947SEPT7+FALSE
chr3156259229TC1.62025E-06SSR3-TRUEAluSq2SINE,Alu
chr8143739435CT7.32829E-06JRK-FALSE
chr128824041TA0.00872PHACTR4+FALSEAluSxSINE,Alu
chr457326126AG0.00790PAICS+TRUEAluJrSINE,Alu
chr3193385047CT0.00259OPA1+FALSE
chr186049361AG0.00036CYR61+FALSE
chr1157092836GA0.00383.FALSE
chr16282301TC0.00290ICMT-TRUEAluSzSINE,Alu
chr131905884GA2.48126E-05SERINC2+FALSE
chr6158364714AG0.00442SNX9+FALSE
chr2206858904CT0.00783INO80D-FALSE
chr146126142GC0.00171GPBP1L1-FALSE
chr23592638TC0.00164RNASEH1-TRUEAluSz6SINE,Alu
chr10100177984CT6.55965E-05HPS1-FALSE
chr6160526548CA0.00086IGF2R+FALSE
chr1194801635GT0.00844SRSF8+FALSE
chr131732599TG0.00827SNRNP40-FALSE
chr5178293266GA0.00924ZNF354B+FALSE
chr3196660344TA0.00366SENP5+FALSE
chr1202993056TC0.00046TMEM183A+FALSE
chr631324110GA0.00521.FALSE
chr119984098CG0.00826MINOS1-NBL1,NBL1+FALSE
chr1749042388TC2.65954E-10SPAG9-TRUEAluJbSINE,Alu
chr42940371TC0.00150NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr3183547227TC7.80232E-05PARL-FALSE
chr1539880358CT0.00028THBS1+FALSE
chr1175116734CA0.00453RPS3+FALSE
chr2204294497CT0.00203ABI2+FALSE
chr1146400122CG0.00039NBPF20,NBPF10,NBPF25P,NBPF12+FALSE
chr3150261569TG0.00173SERP1-FALSE
chr830536606TC0.00017GSR-TRUEAluSpSINE,Alu
chr679649800CG0.00864PHIP-FALSE
chr2236957822GA0.00929AGAP1+FALSE
chr189447882AG0.00103KYAT3,RBMXL1-FALSE
chr119543456TC0.00386LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr13545189TG0.00027TPRG1L+FALSE
chr1478390880TC0.00050ADCK1+FALSE
chr140539203AT0.00179PPT1-FALSE
chr1114226255GA0.00381MAGI3+FALSE
chr345721934AG0.00639LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr140307166GA0.00026TRIT1-FALSE
chr1144868170CT0.00750NBPF20,PDE4DIP+,-FALSE
chr110042987AG8.46336E-05NMNAT1+TRUEAluScSINE,Alu
chr744618448AG0.00962TMED4-FALSEAluSq2SINE,Alu
chr105499824AG0.00070NET1+FALSE
chr128835934AG0.00069SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr192862337AG0.00595.FALSEAluSpSINE,Alu
chr116945227GT0.00090CROCCP2-FALSE
chr841401571TA0.00240LOC102723729,GINS4+,-FALSE
chr1160967854TC0.00150F11R-TRUEAluSpSINE,Alu
chr1061548856TC0.00067CCDC6-FALSE
chr825272425CT0.00605DOCK5+FALSE
chr1246714587GA0.00023TFB2M-FALSE
chr5130537666AG9.26326E-06LYRM7+TRUEAluJbSINE,Alu
chr136770065CT0.00131THRAP3+FALSE(T)nSINE,Alu
chr439550977TC0.00987UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr2192555801CA0.00628LOC105747689+FALSE
chr1142688506TC0.00337.FALSE
chr1542550445TC0.00360TMEM87A-FALSE
chr1223178477CT0.00519DISP1+FALSE
chr131732603AC0.00164SNRNP40-FALSE
chr1789187CG5.07459E-05LINC01128+FALSE
chr1911945631AG0.00091ZNF440+TRUEAluSpSINE,Alu
chr145280426AG0.00802.FALSEAluSxSINE,Alu
chr626368938CT0.00121BTN3A2+FALSE
chr111847902CA0.00364C1orf167,MTHFR+,-FALSE
chr1145511968AG0.00411NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr110521170TC0.00498DFFA-TRUEAluYSINE,Alu
chr9108152702GA2.83018E-05SLC44A1+FALSE
chr1160966351TC0.00034F11R-TRUEAluSgSINE,Alu
chr980886829CA6.48097E-06.FALSE(TTTCTTTT)nSINE,Alu
chr167874689TC3.52759E-06SERBP1-TRUEAluSx3SINE,Alu
chr115818081TC9.65448E-05CASP9-TRUEAluJbSINE,Alu
chr1205683407TA0.00034NUCKS1-FALSE
chr1246714587GA0.00150TFB2M-FALSE
chr2208619699AG0.00741CCNYL1+TRUEAluJbSINE,Alu
chr5170837892CA0.00725.FALSE
chr19162224TC0.00372.FALSEAluSxSINE,Alu
chr1220231946TC0.00439RNU5F-1,BPNT1+,-FALSEAluSzSINE,Alu
chr4101947014GC0.00140PPP3CA-FALSE
chr116913612GA0.00145NBPF1-FALSE
chr11768386TC0.00208PDDC1-TRUEAluScSINE,Alu
chr1013320126TA0.00830PHYH-FALSE
chr285132772GC5.10736E-05TMSB10+FALSE
chr138478446CG4.10892E-09UTP11+FALSE
chr136531942AG0.00042.FALSEAluSq2SINE,Alu
chr3113370193CT4.09251E-05USF3-FALSEUCON34SINE,Alu
chr261278017AG8.96590E-05PEX13+TRUEAluYSINE,Alu
chr720177525TC0.00052MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr217836722TA0.00816VSNL1+FALSE
chr11152309AT0.00030SDF4-FALSE
chr185787118GC0.00104DDAH1-FALSE
chr1145293566GA0.00103NBPF20,NBPF10+FALSE
chr1155695960AG1.11424E-05DAP3+TRUEAluSpSINE,Alu

Differential Expression Gene Analysis