RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr8	117784431	T	A	0.00422	UTP23	+	FALSE	AluSz6	SINE,Alu
chr5	125961534	A	G	0.00233	PHAX	+	TRUE	AluSz6	SINE,Alu
chr3	120046117	G	T	0.00443	LRRC58	-	FALSE	AluYi6	SINE,Alu
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr16	75480021	T	C	0.00270	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr2	99812414	A	G	9.82924E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	109818162	T	C	0.00253	CELSR2	+	FALSE
chr5	125962354	A	G	3.71532E-05	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr1	93616202	T	C	0.00194	TMED5	-	FALSE
chrX	77083845	T	C	0.00102	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	109475543	A	G	0.00325	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	1337733	A	C	0.00017	MRPL20	-	FALSE
chr1	38423184	C	T	4.70100E-06	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr5	37290571	T	C	0.00097		.	FALSE	AluSz	SINE,Alu
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr1	53359187	A	G	0.00813	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr1	212515613	C	T	0.00286	PPP2R5A	+	FALSE
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr1	77759578	A	G	0.00404	AK5	+	FALSE
chr7	17384395	A	G	1.20082E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr2	9630247	T	G	0.00638	ADAM17	-	FALSE
chr3	49453834	C	T	0.00518	TCTA	+	FALSE
chr11	94801640	A	C	0.00790	SRSF8	+	FALSE
chr3	128338880	T	A	0.00828	RPN1	-	FALSE
chr1	1683565	G	A	0.00269	NADK	-	FALSE
chr7	35840866	A	G	0.00947	SEPT7	+	FALSE
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr1	200522059	A	T	0.00163	KIF14	-	FALSE	AluSg	SINE,Alu
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr1	85742157	G	C	0.00514	BCL10,LOC646626	+,-	FALSE
chr3	45722396	A	G	0.00231	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	75671215	C	T	0.00019	SLC44A5	-	FALSE
chr3	63996262	C	T	0.00273	PSMD6-AS2,PSMD6	+,-	FALSE
chr16	9200168	A	T	0.00908	C16orf72	+	FALSE	AluSx1	SINE,Alu
chr1	93826819	A	T	0.00086	DR1	+	FALSE	(GTTTT)n	SINE,Alu
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr1	225683184	G	T	0.00741	ENAH	-	FALSE
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	16945780	C	T	0.00034	CROCCP2	-	FALSE
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr14	74526975	T	C	0.00024	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	99517466	G	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	71531596	A	G	1.07667E-05	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	10517300	T	C	0.00113		.	FALSE	AluJr	SINE,Alu
chr10	63954812	A	C	0.00641	RTKN2	-	FALSE
chr1	36068295	T	C	0.00393	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr3	180694862	C	T	0.00638	FXR1	+	FALSE	(T)n	SINE,Alu
chr2	75120159	C	T	0.00180	HK2	+	FALSE
chr1	20977221	A	T	0.00116	PINK1,PINK1-AS	+,-	FALSE
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr1	149581866	C	G	0.00774	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr17	65334846	T	C	0.00456	PSMD12	-	FALSE	AluSq	SINE,Alu
chr2	55516891	G	A	2.12747E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr5	10435491	G	A	0.00606	MARCH6	+	FALSE
chr2	70452144	T	G	0.00191	TIA1	-	FALSE
chr1	6683578	T	C	0.00151	PHF13	+	FALSE
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr8	141461185	A	G	0.00793	TRAPPC9	-	FALSE
chr10	89623858	G	C	0.00086	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr2	50147866	G	A	0.00130	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	33149400	A	G	0.00026	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr5	121400545	A	T	0.00740	LOX	-	FALSE
chr19	46053172	T	C	0.00098	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	67874859	T	C	0.00071	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	145116141	G	A	0.00266	NBPF20,SEC22B	+	FALSE
chr1	19543352	T	C	0.00715	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	204521625	A	G	0.00808	MDM4	+	TRUE	AluSg	SINE,Alu
chr4	1387223	A	G	0.00155	CRIPAK	+	TRUE	AluSx	SINE,Alu
chr1	121134245	C	T	0.00174	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	(TTTCCT)n	SINE,Alu
chr3	191100561	C	A	2.52744E-07	CCDC50	+	FALSE
chr1	10521170	T	C	0.00498	DFFA	-	TRUE	AluY	SINE,Alu
chr13	99056476	A	T	0.00535	FARP1	+	FALSE
chr1	16889423	G	C	6.92544E-07	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	10519982	T	C	0.00572		.	FALSE	AluJr	SINE,Alu
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr2	11966317	T	C	0.00011	LPIN1	+	FALSE
chr1	59124223	G	A	0.00327	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	101444796	C	T	0.00453	SLC30A7	+	FALSE
chr5	156905300	A	C	0.00870	ADAM19	-	FALSE	MER92B	SINE,Alu
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr12	9464350	G	C	0.00209	LOC642846	+	FALSE
chr16	75479474	T	C	2.06057E-06	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	121115958	T	C	0.00818	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	39989926	T	C	0.00354	BMP8A,PPIEL	+,-	FALSE
chr1	205737659	C	T	0.00024	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	201846632	C	T	7.46598E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr1	146033815	G	A	0.00307	NBPF20,NBPF10,NBPF25P,NBPF11	+,-	FALSE
chr3	156259308	T	C	0.00013	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	47604176	C	T	0.00328	EPCAM	+	FALSE
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr2	9629298	G	C	0.00590	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	11722688	G	A	0.00076	FBXO44	+	FALSE
chr16	75479891	T	C	9.48885E-06	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr3	9934605	T	C	3.00360E-07	JAGN1	+	FALSE
chr5	150647744	A	G	0.00036	GM2A	+	TRUE	AluSc	SINE,Alu
chr4	153701130	C	T	2.11271E-05	ARFIP1	+	FALSE
chr4	165998692	T	C	0.00568	TMEM192	-	TRUE	AluSg	SINE,Alu
chr7	20177613	T	C	0.00913	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	207942482	A	G	0.00715	CD46	+	TRUE	AluSg4	SINE,Alu
chr2	74442431	T	G	0.00375		.	FALSE
chr6	29910586	G	A	1.69263E-05		.	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr1	85785554	C	T	0.00365	DDAH1	-	FALSE
chr1	67518534	C	T	0.00682	SLC35D1	-	FALSE
chrX	2824916	T	C	6.31541E-06	ARSD	-	TRUE	AluSx1	SINE,Alu
chr3	124950421	T	A	0.00713	ZNF148	-	FALSE
chr11	65404869	G	T	1.77375E-05	PCNX3	+	FALSE
chr14	95555551	C	T	0.00404	DICER1	-	FALSE
chr1	2160436	C	T	0.00488	SKI	+	FALSE	(CGC)n	SINE,Alu
chrX	77084001	T	C	1.05736E-07	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	109865630	C	T	0.00647	SORT1	-	FALSE
chr10	120801786	G	C	0.00752	EIF3A	-	FALSE
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr7	116147752	A	G	0.00031	CAV2	+	FALSE	(AAAAGAAA)n	SINE,Alu
chr1	149913727	T	C	0.00721	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr2	219460472	T	C	0.00187	CNOT9	+	FALSE
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr17	46803538	C	T	0.00492	HOXB13	-	FALSE
chr1	27481039	A	G	0.00021	SLC9A1	-	FALSE
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr1	981931	A	G	0.00951	AGRN	+	FALSE
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr3	15114492	T	C	0.00073	RBSN	-	TRUE	AluY	SINE,Alu
chr2	99812864	A	G	0.00810	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr1	10517456	T	C	0.00722		.	FALSE	AluSx1	SINE,Alu
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	26801736	A	T	0.00578	HMGN2	+	FALSE	(T)n	SINE,Alu
chr1	206566948	G	A	0.00568	SRGAP2	+	FALSE
chr1	144931330	C	T	0.00479	NBPF20,PDE4DIP	+,-	FALSE
chr3	12877522	A	T	0.00956	RPL32	-	FALSE
chr13	31033316	T	A	0.00497	HMGB1	-	FALSE
chr3	16299968	G	A	0.00470	DPH3	-	FALSE
chr1	113673737	A	G	0.00798		.	FALSE	AluSx1	SINE,Alu
chr1	894378	T	A	0.00068	NOC2L	-	FALSE
chr1	204525669	A	G	0.00169	MDM4	+	TRUE	AluSz	SINE,Alu
chr3	48485452	T	A	0.00363	TMA7	+	FALSE
chr6	71298816	A	T	0.00287		.	FALSE
chr1	1717473	A	C	0.00925	GNB1	-	FALSE
chr5	56177872	A	G	0.00618	MAP3K1	+	TRUE	(CAA)n	SINE,Alu
chr1	246714587	G	A	0.00023	TFB2M	-	FALSE
chr3	179115697	T	C	3.71610E-05	GNB4	-	TRUE	AluSg7	SINE,Alu
chr8	12286546	A	G	0.00400	FAM86B2	-	FALSE
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr3	196729939	C	T	0.00862	MELTF,MFI2-AS1	+,-	FALSE	G-rich	SINE,Alu
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr1	223945582	G	T	0.00304	CAPN2	+	FALSE	AluSx	SINE,Alu
chr1	144606963	G	T	0.00337	NBPF20	+	FALSE
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr1	36794250	A	G	0.00324		.	FALSE	AluJb	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr20	29631627	T	C	0.00040	FRG1BP	+	FALSE
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr1	10517688	T	C	0.00630		.	FALSE	AluSx1	SINE,Alu
chr5	93018884	A	C	0.00538	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr3	42266346	A	G	0.00824	TRAK1	+	FALSE
chr1	220231487	T	C	0.00013	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr10	119038371	C	T	0.00058	SLC18A2	+	FALSE	(ATTTGGCA)n	SINE,Alu
chr3	172115466	T	A	0.00875	FNDC3B	+	FALSE
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr1	19984100	G	C	0.00037	MINOS1-NBL1,NBL1	+	FALSE
chr5	149363414	A	G	0.00458	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	28826118	A	G	0.00039	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr7	44841237	T	A	0.00599	PPIA	+	FALSE
chr7	2290522	C	T	0.00517	NUDT1	+	FALSE
chr2	91843471	C	T	0.00105	LOC654342	-	FALSE
chr3	197400501	C	G	0.00011	RUBCN	-	FALSE
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	26144435	C	G	0.00129	SEPN1	+	FALSE
chr1	1717502	T	G	0.00239	GNB1	-	FALSE
chr1	31732677	G	A	0.00353	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr6	150047376	T	C	0.00306	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	145512166	T	A	0.00823	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr19	53914411	A	G	8.16883E-05	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	146650916	C	T	0.00025	PDIA3P1	+	FALSE
chr7	29961939	G	T	1.47033E-05	SCRN1	-	FALSE
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr17	8378694	A	C	0.00735	MYH10	-	FALSE
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr2	37327702	T	C	0.00989		.	FALSE
chr1	160967890	T	C	0.00876	F11R	-	TRUE	AluSp	SINE,Alu
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	152884247	A	G	0.00642	IVL	+	FALSE
chr2	24224040	A	G	0.00882		.	FALSE	AluSp	SINE,Alu
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr5	137891109	C	G	0.00031	HSPA9	-	FALSE
chr1	21793644	G	A	0.00698	NBPF3	+	FALSE
chr1	100440563	A	G	0.00732	SLC35A3	+	FALSE	AluJb	SINE,Alu
chr1	51873951	G	A	0.00591	EPS15	-	FALSE
chr7	2473747	A	G	0.00872	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr1	145282799	G	A	0.00882	NBPF20,NOTCH2NL	+	FALSE
chr1	14143003	A	G	0.00028	PRDM2	+	FALSE
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr1	120166681	G	A	0.00241	ZNF697	-	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr17	18111804	T	G	0.00487	ALKBH5	+	FALSE	(TTTTGTT)n	SINE,Alu
chr1	67874697	T	C	0.00163	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10517653	T	C	0.00038		.	FALSE	AluSx1	SINE,Alu
chr17	42876730	T	C	0.00024	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	12677549	T	A	1.84464E-05	DHRS3	-	FALSE	(A)n	SINE,Alu
chr6	42981525	G	C	0.00041	MEA1	-	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chr9	137330716	A	C	0.00058	RXRA	+	FALSE
chr7	129474438	C	T	0.00034	UBE2H	-	FALSE
chr1	155734530	T	C	0.00214	GON4L	-	TRUE
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr1	6282371	T	C	0.00054	ICMT	-	TRUE	AluSz	SINE,Alu
chr11	71943768	G	T	1.87744E-06	INPPL1	+	FALSE
chr1	10517276	T	C	0.00252		.	FALSE	AluJr	SINE,Alu
chr1	38327700	T	C	0.00510	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr2	206983138	T	C	0.00669		.	FALSE	AluJb	SINE,Alu
chr3	32496328	C	A	0.00013	CMTM7	+	FALSE
chr1	226333556	C	A	0.00250	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	26226610	C	T	0.00955	STMN1	-	FALSE
chr1	567489	T	C	0.00119		.	FALSE
chr7	94297301	G	T	0.00145	PEG10	+	FALSE
chr1	36067784	T	C	2.18848E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	114443574	A	G	0.00162	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr5	137754695	T	C	0.00266	KDM3B	+	FALSE
chr3	14986137	T	C	0.00132	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr4	114135223	A	T	5.22810E-05	ANK2	+	FALSE
chr3	17199207	T	A	0.00075	TBC1D5	-	FALSE	A-rich	SINE,Alu
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	95572111	A	C	0.00409	DICER1	-	FALSE
chr6	42981526	C	G	0.00129	MEA1	-	FALSE
chr1	15818090	T	C	0.00089	CASP9	-	TRUE	AluJb	SINE,Alu
chr20	25428669	A	G	0.00023	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	145281656	A	T	0.00768	NBPF20,NOTCH2NL	+	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr1	155851620	A	G	6.99218E-05	SYT11	+	TRUE	AluSq2	SINE,Alu
chr1	173836602	G	A	0.00886	GAS5	-	FALSE	AluSx	SINE,Alu
chr2	37429737	A	G	0.00549	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr8	11700373	T	C	0.00212	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	41972561	T	C	0.00606	HIVEP3	-	FALSE	(T)n	SINE,Alu
chr1	16890671	T	C	0.00097	NBPF1	-	FALSE
chr1	184761312	T	C	0.00077	FAM129A	-	TRUE	AluJo	SINE,Alu
chr1	28607959	C	A	0.00230	SESN2	+	FALSE
chr1	179084080	T	G	0.00926	ABL2	-	FALSE
chr1	10517314	T	C	0.00073		.	FALSE	AluJr	SINE,Alu
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr3	14986110	T	C	0.00632	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	10519932	T	C	0.00323		.	FALSE	AluJr	SINE,Alu
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu

RBP	TAF15
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR611ZAL
Platform	HiSeq
Pubmed ID	32252787

TAF15 - Target Gene Network