RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	40537924	G	A	0.00404	CAP1	+	FALSE	(A)n	SINE,Alu
chr19	39669597	T	C	0.00610	PAK4	+	FALSE	(TG)n	SINE,Alu
chr2	128603114	T	C	0.00143		.	FALSE	AluSp	SINE,Alu
chr1	32638096	C	T	0.00857	KPNA6	+	FALSE
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr3	17201882	C	T	0.00259	TBC1D5	-	FALSE
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr1	89479063	G	A	0.00076	GBP3	-	FALSE
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr1	16889044	T	A	0.00256	NBPF1	-	FALSE
chr5	145666114	G	T	0.00766	RBM27	+	FALSE
chr1	160112392	G	A	0.00701	ATP1A2	+	FALSE	AluSx3	SINE,Alu
chr3	44791547	T	C	0.00184	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr6	29910583	C	T	4.95604E-05		.	FALSE
chr1	16929327	C	T	0.00304	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	211918115	C	T	0.00979	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr2	48602186	A	G	0.00870	FOXN2	+	FALSE
chr1	36068276	T	C	0.00110	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	10689212	C	T	3.39921E-05	PINX1	-	FALSE
chr1	1650832	A	G	0.00241	CDK11B,CDK11A	-	FALSE
chr1	1001422	G	T	0.00998		.	FALSE	LTR13A	SINE,Alu
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr4	9998493	A	G	5.94150E-05	SLC2A9	-	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr1	9163502	T	C	0.00366		.	FALSE	AluSp	SINE,Alu
chr2	188330198	C	A	0.00091	TFPI	-	FALSE	AluJb	SINE,Alu
chr14	50792966	A	T	0.00852		.	FALSE	AluSx	SINE,Alu
chr16	747231	T	G	0.00269	FBXL16	-	FALSE
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr6	105546950	T	C	0.00443	BVES	-	TRUE	AluJb	SINE,Alu
chr1	8045340	C	A	0.00056	PARK7	+	FALSE
chr1	27202982	T	C	0.00850		.	FALSE	AluSq2	SINE,Alu
chr5	180262080	A	G	0.00259	LINC00847	+	TRUE	MLT2B3	SINE,Alu
chr1	145511983	A	G	0.00596	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	33139061	T	C	0.00079	RBBP4	+	FALSE	AluSx3	SINE,Alu
chr1	10520725	T	C	0.00795	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	145283718	G	A	0.00989	NBPF20,NOTCH2NL	+	FALSE
chr1	228675570	G	C	0.00298	RNF187	+	FALSE
chr3	56763316	G	A	0.00830	ARHGEF3	-	FALSE
chr1	93603188	A	G	0.00374	MTF2	+	FALSE
chr1	1677253	T	C	0.00145	SLC35E2	-	FALSE
chr2	174090630	C	A	0.00025	ZAK,MLK7-AS1	+,-	FALSE
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr1	148556087	G	C	0.00486		.	FALSE
chr2	128620438	C	A	0.00230	AMMECR1L	-	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr1	28939803	C	T	1.27013E-09	TAF12	-	FALSE
chr3	42636141	G	A	0.00224	SEC22C,SS18L2	+,-	FALSE
chr1	45244414	T	A	0.00456		.	FALSE
chr1	28861636	G	A	0.00754	RCC1	+	FALSE	(GCATGT)n	SINE,Alu
chr1	201846617	A	C	0.00380	IPO9	+	FALSE	(CA)n	SINE,Alu
chr3	197611106	A	G	0.00137		.	FALSE	AluSx1	SINE,Alu
chr20	10036845	A	G	0.00110	SNAP25-AS1,ANKEF1	+,-	FALSE
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr1	244219904	T	G	0.00482	ZBTB18	+	FALSE
chr1	179042550	A	G	0.00831	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	142804438	G	T	0.00522		.	FALSE
chr3	150262002	G	T	0.00016	SERP1	-	FALSE
chr7	29961939	G	T	1.47033E-05	SCRN1	-	FALSE
chr3	5257975	A	T	9.78592E-05	EDEM1	+	FALSE
chr1	160967857	T	C	0.00806	F11R	-	TRUE	AluSp	SINE,Alu
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr11	33694645	T	C	2.61039E-05	KIAA1549L	+	FALSE
chr12	133297934	A	G	9.03426E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr3	69038160	G	A	0.00557	EOGT	-	FALSE
chr8	37613106	T	C	0.00626	ERLIN2	+	FALSE
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr1	15989141	C	G	0.00677		.	FALSE
chr3	73431830	A	G	0.00157	PDZRN3	-	FALSE
chr17	65334802	T	C	1.10547E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	45244419	T	A	0.00027		.	FALSE
chr1	6659505	G	A	0.00196	KLHL21	-	FALSE
chr1	29095757	G	T	0.00739	YTHDF2	+	FALSE
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	54692674	A	G	0.00864	SSBP3	-	FALSE
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr4	17803616	T	C	1.55934E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr12	125511311	A	G	0.00299	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	10520487	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr2	10050947	T	C	0.00273	TAF1B	+	FALSE
chr3	10192596	A	G	7.92003E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	10193797	A	G	0.00261	VHL	+	TRUE	AluSx	SINE,Alu
chr2	201774244	T	C	0.00332		.	FALSE	AluSz	SINE,Alu
chr1	145512950	A	G	0.00996	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	9162933	C	T	0.00088		.	FALSE
chr1	109475635	T	C	0.00458	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	32377391	G	A	0.00439	PTP4A2	-	FALSE
chr8	30536437	T	C	0.00062	GSR	-	FALSE	AluSp	SINE,Alu
chr1	36068210	T	C	0.00178	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	37076498	A	C	0.00797	STRN	-	FALSE
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	32697109	A	G	0.00015	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr2	34080819	A	C	0.00815	LINC01317	+	FALSE	MSTD	SINE,Alu
chr12	124146569	A	G	0.00013	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr10	15120306	T	C	0.00323	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr2	11674374	A	G	0.00559	GREB1	+	FALSE	Tigger9b	SINE,Alu
chr1	38002068	C	T	0.00962	SNIP1	-	FALSE
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	19542458	T	C	1.01966E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	205683407	T	A	0.00034	NUCKS1	-	FALSE
chr2	75888160	A	C	0.00599	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr3	188603007	C	G	0.00785	LPP	+	FALSE
chr9	116022896	T	C	9.26547E-05	SLC31A1	+	FALSE
chr3	99463810	G	T	0.00496	MIR548G,COL8A1	+,-	FALSE
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr1	10517659	T	C	0.00010		.	FALSE	AluSx1	SINE,Alu
chr1	22854931	C	A	7.08508E-09	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr7	77409288	A	G	7.47972E-05		.	FALSE	AluSc	SINE,Alu
chr6	74303531	T	C	0.00487	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr2	54888359	A	G	3.08576E-05	SPTBN1	+	FALSE
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr6	149915565	A	G	0.00198	RPS18P9	+	FALSE
chr1	33148284	A	G	0.00793	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	144606838	A	G	0.00988	NBPF20	+	FALSE
chr1	59142713	T	C	0.00246	MYSM1	-	FALSE
chr1	28060574	A	G	0.00206	FAM76A	+	FALSE
chr1	94982784	T	A	0.00179	ABCD3	+	FALSE
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr2	176791250	T	C	0.00078	LNPK	-	TRUE	MSTD	SINE,Alu
chr1	109479978	G	T	0.00057	CLCC1	-	FALSE
chr1	31905887	A	C	0.00245	SERINC2	+	FALSE
chr8	48889672	A	G	0.00091	MCM4	+	TRUE	AluSx3	SINE,Alu
chr1	40229368	A	G	0.00154	BMP8B,PPIE	+,-	FALSE
chr18	11852628	C	T	0.00048	GNAL,CHMP1B	+	FALSE
chr5	118174745	T	C	0.00084	DTWD2	-	TRUE	AluY	SINE,Alu
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr7	20178420	T	C	0.00053	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr11	76733946	A	G	0.00725	ACER3	+	FALSE	A-rich	SINE,Alu
chr14	75202857	A	G	2.23354E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	6259025	C	T	0.00700	RPL22	-	FALSE
chr13	39598616	G	A	2.18804E-06	PROSER1	-	FALSE
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	3545183	A	T	0.00347	TPRG1L	+	FALSE
chr16	67715890	T	C	9.92672E-05	GFOD2	-	TRUE	AluJr	SINE,Alu
chr3	49315592	T	C	0.00127	USP4	-	FALSE
chr1	120165038	A	G	0.00926	ZNF697	-	FALSE
chr1	35648711	A	C	0.00377	SFPQ	-	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr1	23847464	C	A	0.00895	E2F2	-	FALSE
chr1	32739982	G	A	0.00300	LCK	+	FALSE
chr22	39069181	T	C	0.00346	CBY1	+	FALSE
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr1	10044137	A	G	2.83529E-05	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr1	9160900	T	C	0.00542		.	FALSE	AluJb	SINE,Alu
chr10	120801785	T	A	0.00665	EIF3A	-	FALSE
chrX	123045405	A	G	0.00551	XIAP	+	TRUE	AluJo	SINE,Alu
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr1	26755494	A	G	0.00874	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr1	148251083	T	C	0.00041	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr3	57612314	T	C	0.00529	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr1	145282799	G	A	0.00081	NBPF20,NOTCH2NL	+	FALSE
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chr4	22404391	G	A	0.00338	ADGRA3	-	FALSE
chr4	44176960	T	C	0.00043	KCTD8	-	FALSE
chr1	12677547	G	A	0.00015	DHRS3	-	FALSE	(A)n	SINE,Alu
chr17	3512398	T	C	0.00709	SHPK,TRPV1	-	TRUE	AluSx	SINE,Alu
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr1	8938276	T	A	0.00178	ENO1	-	FALSE
chr2	37333930	T	C	0.00073	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr1	10519932	T	C	5.00916E-05		.	FALSE	AluJr	SINE,Alu
chr5	81571875	A	T	0.00072	RPS23	-	FALSE
chr7	99636950	A	G	0.00927	ZKSCAN1	+	FALSE	AluSx1	SINE,Alu
chr3	9848222	A	T	0.00083	ARPC4,ARPC4-TTLL3	+	FALSE
chr3	53265766	C	T	0.00088	TKT	-	FALSE
chr3	22424406	A	T	0.00760		.	FALSE
chr1	32687473	T	G	0.00892	TMEM234,EIF3I	+,-	FALSE
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	180855948	G	A	0.00218	XPR1	+	FALSE
chr1	75171751	T	C	0.00563	CRYZ	-	FALSE
chr13	99056476	A	T	0.00535	FARP1	+	FALSE
chr11	76733943	A	G	0.00925	ACER3	+	FALSE	A-rich	SINE,Alu
chr2	217366866	A	G	0.00247		.	FALSE	AluSz6	SINE,Alu
chr2	72968438	G	T	0.00147	EXOC6B	-	FALSE
chr1	20978304	T	A	0.00018	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	117644949	C	G	0.00862	TTF2	+	FALSE
chr1	31532379	A	G	0.00092	PUM1	-	FALSE
chr2	9629298	G	C	0.00590	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	19542301	T	C	0.00032	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	47746678	G	C	0.00328	STIL	-	FALSE
chr2	37327589	T	C	0.00253		.	FALSE
chr2	37327662	T	C	0.00220		.	FALSE
chr3	62189314	C	T	0.00018	PTPRG	+	FALSE
chr1	74672474	G	A	0.00014	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr2	26616356	A	G	0.00030	EPT1	+	FALSE
chr2	70316226	A	C	0.00426	PCBP1	+	FALSE
chr1	121133995	G	C	0.00575	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr1	100440553	A	G	0.00179	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	27202845	T	C	0.00034		.	FALSE	AluSq2	SINE,Alu
chr1	144594232	C	T	2.29859E-05	NBPF20	+	FALSE
chr1	12677525	G	A	0.00122	DHRS3	-	FALSE	(A)n	SINE,Alu
chr7	128293103	A	C	0.00313	LINC01000	+	FALSE
chr3	73025345	A	G	0.00219		.	FALSE	AluSz	SINE,Alu
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr1	70696395	A	T	0.00364	SRSF11	+	FALSE
chr1	1593750	A	G	0.00191	CDK11B,SLC35E2B	-	FALSE
chr3	172115590	A	G	0.00355	FNDC3B	+	FALSE
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	19542433	T	C	0.00076	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr7	44841236	G	A	0.00819	PPIA	+	FALSE
chr7	6442891	G	A	0.00134	RAC1	+	FALSE
chr2	86947783	C	T	0.00515	RNF103-CHMP3,RMND5A	+,-	FALSE
chr1	23833607	A	T	0.00818	E2F2	-	FALSE
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	114939633	G	A	0.00188	TRIM33	-	FALSE
chr4	144475125	T	G	0.00133	SMARCA5	+	FALSE
chr5	68858545	C	G	0.00268	GTF2H2C,GTF2H2C_2	+	FALSE	AluSz	SINE,Alu
chr4	39460539	G	A	0.00323	RPL9	-	FALSE
chr14	50792961	G	A	0.00547		.	FALSE	AluSx	SINE,Alu
chr1	180144485	G	A	0.00665	QSOX1	+	FALSE
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr1	206581246	T	C	0.00210	SRGAP2	+	FALSE
chr1	204524400	A	G	0.00029	MDM4	+	TRUE	AluY	SINE,Alu
chr3	158320703	C	A	0.00841	MLF1	+	FALSE
chr12	125511952	A	G	0.00138	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	46828653	T	A	0.00920	NSUN4	+	FALSE
chr1	36068295	T	C	0.00393	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	2940347	T	C	0.00466	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr7	100031502	C	T	0.00091	MEPCE	+	FALSE
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr1	15736752	G	A	0.00170	EFHD2	+	FALSE
chr21	34729931	A	G	0.00040	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	145282600	A	C	0.00391	NBPF20,NOTCH2NL	+	FALSE	MER126	SINE,Alu
chr1	115249843	G	A	0.00218	NRAS	-	FALSE
chr1	114455907	G	A	0.00705	DCLRE1B	+	FALSE
chr2	201774279	T	C	9.55391E-05		.	FALSE	AluSz	SINE,Alu
chr1	20826781	C	T	0.00110	MUL1	-	FALSE
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr2	170488325	A	G	0.00698	PPIG	+	FALSE
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	160969268	C	T	0.00835	NMD3	+	FALSE
chr11	64084160	C	T	0.00895	ESRRA,TRMT112	+,-	FALSE
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr1	207943285	A	G	0.00011	CD46	+	TRUE	AluSx1	SINE,Alu
chr9	115447580	T	C	2.95057E-05	INIP	-	TRUE	AluJb	SINE,Alu
chr1	28826118	A	G	0.00341	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	145689812	A	G	0.00431	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	1667419	A	C	0.00028	SLC35E2	-	FALSE	AluSg	SINE,Alu
chr4	57326315	A	G	0.00281	PAICS	+	TRUE	AluJr	SINE,Alu

RBP	CNOT7
Knock-Method	shRNA
RBP Family	CAF1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR113PYX
Platform	HiSeq
Pubmed ID	32252787

CNOT7 - Target Gene Network