RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	19238556	G	A	6.03260E-07	IFFO2	-	FALSE
chr2	131906031	C	T	0.00439	PLEKHB2	+	FALSE
chr22	35817553	C	T	0.00038	MCM5	+	FALSE
chr2	99812465	A	G	0.00367	MRPL30	+	TRUE	AluSx	SINE,Alu
chr4	170678993	T	C	3.15742E-05	HPF1	-	FALSE
chr5	36687341	T	C	0.00930	SLC1A3	+	FALSE
chr1	179325847	A	G	7.26692E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	116947396	A	G	0.00226	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	65694080	C	T	0.00442	AK4	+	FALSE	(TCCC)n	SINE,Alu
chr1	3545191	C	T	5.51731E-05	TPRG1L	+	FALSE
chr3	197682724	T	A	0.00556	IQCG	-	FALSE
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr5	151041884	T	A	0.00101	SPARC	-	FALSE
chr1	16890428	T	A	1.76753E-05	NBPF1	-	FALSE
chr1	144852203	T	G	0.00029	NBPF20,PDE4DIP	+,-	FALSE
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr15	33064148	T	C	1.59288E-05	FMN1	-	FALSE
chr6	42854739	A	C	0.00671	RPL7L1	+	FALSE	AluSc	SINE,Alu
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr7	156764350	G	C	0.00415	NOM1	+	FALSE
chr1	180082720	G	A	0.00577	CEP350	+	FALSE
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr1	1595586	T	C	0.00051	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr3	123368013	A	G	0.00812	MYLK	-	FALSE
chr1	120162442	T	C	0.00065	ZNF697	-	FALSE
chr1	10517653	T	C	1.73226E-05		.	FALSE	AluSx1	SINE,Alu
chr10	49609751	A	G	0.00979	MAPK8	+	FALSE
chr1	9163334	T	C	0.00632		.	FALSE	AluSp	SINE,Alu
chr2	9629290	T	G	0.00180	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr19	45406537	T	C	0.00278	TOMM40	+	FALSE
chr8	48890109	A	G	8.88178E-16	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	33087433	C	T	0.00687	ZBTB8OS	-	FALSE
chr1	149819554	T	C	0.00137		.	FALSE	MLT1C2	SINE,Alu
chr4	17804879	T	C	0.00863	DCAF16	-	TRUE	AluSx	SINE,Alu
chr7	148700782	G	A	0.00209	PDIA4	-	FALSE
chr5	79923361	T	C	0.00013	DHFR	-	TRUE	AluJr	SINE,Alu
chr5	175811093	A	G	0.00730	NOP16	-	FALSE
chr2	37331025	T	C	0.00029		.	FALSE	AluSx1	SINE,Alu
chr1	20976032	T	C	9.95086E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	3545186	T	G	0.00314	TPRG1L	+	FALSE
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	206987725	T	C	0.00108		.	FALSE	AluJb	SINE,Alu
chr1	1419746	A	G	0.00016	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chr1	153585584	G	A	0.00011	S100A16	-	FALSE
chr15	74319092	A	G	0.00029	PML	+	TRUE	AluSz6	SINE,Alu
chr5	118729619	A	G	0.00586	TNFAIP8	+	FALSE
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr17	48771484	C	A	0.00737	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr1	115249843	G	A	0.00218	NRAS	-	FALSE
chr15	23282993	G	A	0.00337	HERC2P2	-	FALSE
chr1	16890639	C	T	8.47214E-05	NBPF1	-	FALSE
chr4	128757415	A	G	0.00367		.	FALSE	AluY	SINE,Alu
chr1	12071680	A	G	0.00985	MFN2	+	FALSE
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr15	89803950	C	T	0.00698	FANCI	+	FALSE
chr1	52817399	T	C	0.00346	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr3	128338880	T	A	0.00828	RPN1	-	FALSE
chr1	6582221	T	C	6.47537E-05	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	53679610	G	A	0.00217	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	35319605	A	C	0.00226	SMIM12	-	FALSE	AluSg	SINE,Alu
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr2	55516897	A	G	1.06852E-06	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	19810693	G	C	0.00042	CAPZB	-	FALSE
chr3	195436334	A	G	0.00017	LINC00969	+	TRUE	AluJr	SINE,Alu
chr4	57194712	A	C	0.00399	KIAA1211	+	FALSE
chr1	154128827	A	T	0.00724	TPM3	-	FALSE
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr6	134492482	A	C	0.00108	SGK1	-	FALSE
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr10	101992783	T	C	0.00313	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	144931727	G	A	0.00521	NBPF20,PDE4DIP	+,-	FALSE
chr4	52888499	G	A	0.00366	SGCB	-	FALSE
chr4	7060935	G	C	0.00543	GRPEL1	-	FALSE	Tigger4a	SINE,Alu
chr1	145689537	A	G	0.00028	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr1	155838369	G	C	0.00346	SYT11	+	FALSE
chr1	108678732	T	C	0.00396	SLC25A24	-	FALSE
chr1	10517314	T	C	0.00617		.	FALSE	AluJr	SINE,Alu
chr1	16889864	C	A	0.00598	NBPF1	-	FALSE
chr1	9162348	T	C	0.00824		.	FALSE	AluSx	SINE,Alu
chr1	36067817	T	C	0.00016	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	41133089	C	T	0.00179	RUNDC1	+	FALSE
chr3	170113815	G	T	0.00586	SKIL	+	FALSE
chr1	6585131	C	T	0.00141	NOL9	-	FALSE
chr4	663908	A	G	0.00320	PDE6B	+	FALSE
chr19	18476176	A	G	0.00452	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr4	144475125	T	G	0.00133	SMARCA5	+	FALSE
chr7	73150511	T	C	0.00414	ABHD11	-	FALSE
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	3731959	C	T	0.00089	CEP104	-	FALSE
chr8	11701458	T	C	1.82355E-06	CTSB	-	TRUE	AluSx1	SINE,Alu
chr4	2940347	T	C	0.00113	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	180897569	C	T	0.00960	KIAA1614	+	FALSE
chr2	217366192	T	A	0.00067		.	FALSE
chr3	98518156	T	A	7.17121E-05	DCBLD2	-	FALSE
chr16	81064440	A	G	0.00409	CENPN	+	TRUE	AluSg	SINE,Alu
chr2	202031806	A	T	0.00543	CFLAR	+	FALSE
chr12	125511404	A	G	0.00201	THRIL	-	FALSE	AluSx1	SINE,Alu
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr1	143189042	C	T	0.00087	LOC102723769	-	FALSE	L1MC4	SINE,Alu
chr1	16932912	T	C	0.00808	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr4	57326262	A	G	2.33397E-05	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	22853141	G	A	0.00060	ZBTB40	+	FALSE
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr3	42266360	T	C	0.00279	TRAK1	+	FALSE
chr1	33149502	A	G	0.00045	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr19	21304019	A	G	0.00111	ZNF714	+	TRUE	AluY	SINE,Alu
chr1	36770621	G	T	0.00424	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr1	9427842	A	G	0.00923	SPSB1	+	FALSE
chr15	83826216	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr1	1345002	A	G	0.00141		.	FALSE	AluSg	SINE,Alu
chr1	211533352	A	G	0.00025	TRAF5	+	FALSE
chr2	25042625	C	G	0.00766	CENPO,ADCY3	+,-	FALSE
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr3	24019976	C	A	0.00485	NR1D2	+	FALSE
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr3	44839350	A	C	0.00837	KIF15	+	FALSE
chr1	16952298	A	C	2.15086E-05	CROCCP2	-	FALSE
chr4	39550978	T	C	0.00558	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr3	49460407	C	T	0.00080	NICN1	-	FALSE	L2c	SINE,Alu
chr1	53291434	A	G	0.00108	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr17	65335445	T	C	0.00084	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	16933628	A	G	0.00430	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	10517653	T	C	0.00792		.	FALSE	AluSx1	SINE,Alu
chr1	144053567	C	T	0.00037		.	FALSE
chr1	148556790	T	A	0.00728		.	FALSE
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr1	1255412	C	A	0.00751	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr19	11256626	T	C	1.61091E-07	SPC24	-	TRUE	AluJr4	SINE,Alu
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr2	3609064	G	A	0.00614	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	204521576	A	G	0.00021	MDM4	+	TRUE	AluSg	SINE,Alu
chr2	20449605	C	T	0.00871	PUM2	-	FALSE
chr12	32532505	G	A	0.00385		.	FALSE
chr4	119555142	A	G	4.95460E-05	LOC729218	+	FALSE
chr4	17803537	T	C	0.00366	DCAF16	-	TRUE	AluY	SINE,Alu
chr8	117784431	T	A	0.00422	UTP23	+	FALSE	AluSz6	SINE,Alu
chr1	145689611	C	A	0.00104	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	202848587	G	A	2.63176E-05	RABIF	-	FALSE
chr1	227847344	T	C	0.00205	ZNF678	+	FALSE
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr6	132617374	C	G	0.00062	MOXD1	-	FALSE
chr1	46159809	T	A	0.00605	TMEM69	+	FALSE
chr1	990280	C	T	0.00243	AGRN	+	FALSE
chr1	214524129	T	C	0.00052	PTPN14	-	TRUE	AluSx	SINE,Alu
chr1	197070776	C	T	0.00698	ASPM	-	FALSE
chr14	75202288	C	T	0.00706	FCF1	+	FALSE	AluSc	SINE,Alu
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr2	174090631	A	C	0.00038	ZAK,MLK7-AS1	+,-	FALSE
chr1	19246181	A	G	1.12993E-05	IFFO2	-	FALSE
chr14	63841400	A	C	0.00122	PPP2R5E	-	FALSE
chr7	55433880	G	C	0.00115	LANCL2	+	FALSE
chr2	101186088	C	T	0.00817	PDCL3	+	FALSE
chr4	2070260	G	A	0.00724	NAT8L	+	FALSE	(TG)n	SINE,Alu
chr1	1273359	T	G	0.00254	DVL1	-	FALSE
chr1	145512925	A	G	0.00230	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	109812555	A	C	3.87556E-05	CELSR2	+	FALSE
chr1	54871709	T	C	0.00110	SSBP3	-	FALSE
chr1	53291395	A	G	0.00323	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr5	157185192	A	G	0.00835	LSM11	+	TRUE	AluSq	SINE,Alu
chr14	23794557	T	A	0.00983	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	6283306	T	C	0.00505	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	46269493	G	C	0.00233	MAST2	+	FALSE
chr2	37330612	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr3	99515750	A	G	2.61553E-11	MIR548G	-	FALSE
chr3	25777072	C	T	4.38639E-06	NGLY1	-	FALSE	L1MEg	SINE,Alu
chr3	196660052	G	A	0.00200	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	6653508	G	A	0.00320	KLHL21	-	FALSE
chr1	7737792	C	G	8.96820E-06	CAMTA1	+	FALSE
chr2	151326173	A	C	0.00143	RND3	-	FALSE
chr1	16112795	A	G	0.00145	FBLIM1	+	FALSE
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr16	603884	C	G	0.00118	CAPN15	+	FALSE
chr3	189675266	G	T	0.00781	P3H2	-	FALSE	(TG)n	SINE,Alu
chr1	204524914	A	G	0.00766	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	9161668	T	C	0.00456		.	FALSE
chr1	46077268	A	G	0.00311	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr5	64964623	T	C	1.14652E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr1	53292607	T	A	2.07283E-05	ZYG11B	+	FALSE
chr1	148251814	T	A	0.00353	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	99516962	C	A	2.05391E-14	MIR548G	-	FALSE
chr1	28662254	A	G	0.00052	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	20976163	C	T	1.02809E-07	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	40831098	T	C	3.69541E-05		.	FALSE	AluSx3	SINE,Alu
chr4	101946461	G	T	0.00442	PPP3CA	-	FALSE	(T)n	SINE,Alu
chr12	25358969	T	G	0.00965	KRAS	-	FALSE
chr17	73940167	T	C	0.00035	ACOX1	-	TRUE	AluJb	SINE,Alu
chr1	10517314	T	C	0.00802		.	FALSE	AluJr	SINE,Alu
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr9	111781030	C	T	0.00413	TMEM245	-	FALSE	AluJb	SINE,Alu
chr16	57505637	T	A	0.00643	POLR2C	+	FALSE
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr3	160134195	G	A	0.00631	SMC4	+	FALSE
chr1	204521724	A	G	0.00851	MDM4	+	TRUE	AluSg	SINE,Alu
chr14	21928940	T	C	0.00212	RAB2B	-	TRUE	AluSp	SINE,Alu
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr2	136541076	C	A	0.00211	UBXN4	+	FALSE
chr13	24823699	G	A	0.00472	SPATA13	+	FALSE
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	174090332	A	C	0.00918	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chrX	131339006	T	A	0.00405	RAP2C	-	FALSE
chr14	23300642	C	A	0.00266	MRPL52	+	FALSE	MIRb	SINE,Alu
chr2	207943813	G	T	0.00619	KLF7	-	FALSE	(TTTTGT)n	SINE,Alu
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr6	31132911	C	T	0.00000		.	FALSE
chr1	144822330	C	T	6.80810E-06	NBPF20,NBPF9	+	FALSE
chr1	40537944	C	A	0.00506	CAP1	+	FALSE
chr2	237035915	C	G	0.00348	AGAP1	+	FALSE
chr17	3561396	C	T	0.00322	CTNS	+	FALSE
chr3	9821914	C	T	7.78954E-06	TADA3	-	FALSE
chr5	10655842	C	T	0.00024	ANKRD33B	+	FALSE
chr3	44791406	T	C	0.00598	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr3	52581295	G	A	1.21436E-06	PBRM1	-	FALSE
chr1	16892276	T	C	0.00236	NBPF1	-	FALSE
chr1	28661657	A	G	0.00011	MED18	+	TRUE	AluSg	SINE,Alu
chr19	42375624	A	G	0.00049		.	FALSE	AluSx	SINE,Alu
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr2	208620143	A	G	0.00605	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	197476807	G	C	0.00287	DENND1B	-	FALSE
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	27202844	T	C	0.00076		.	FALSE	AluSq2	SINE,Alu
chr1	155695985	A	G	0.00031	DAP3	+	TRUE	AluSp	SINE,Alu
chr7	6064011	T	A	0.00246	EIF2AK1	-	FALSE
chr1	160967855	T	C	0.00050	F11R	-	TRUE	AluSp	SINE,Alu
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr8	11701343	T	C	0.00280	CTSB	-	TRUE	AluSx1	SINE,Alu
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr1	242048674	C	T	0.00093	EXO1	+	FALSE
chr3	196078364	G	A	6.64958E-05		.	FALSE	GA-rich	SINE,Alu
chr2	37328016	T	C	5.08368E-07		.	FALSE
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr2	37327702	T	C	2.28397E-07		.	FALSE
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr4	57326315	A	G	0.00281	PAICS	+	TRUE	AluJr	SINE,Alu
chr3	40578933	A	G	0.00947	ZNF621	+	TRUE	AluJr	SINE,Alu
chr3	194789663	T	C	0.00754	XXYLT1	-	FALSE	MARNA	SINE,Alu
chr15	41590839	A	G	0.00344	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr5	96368471	G	T	3.92809E-06		.	FALSE
chr1	62628606	A	G	0.00027	PATJ	+	TRUE	AluSg4	SINE,Alu
chr2	25962254	A	T	0.00375	ASXL2	-	FALSE
chr3	172115465	T	A	0.00170	FNDC3B	+	FALSE
chr1	2115914	G	T	0.00970	PRKCZ,FAAP20	+,-	FALSE
chr19	57802824	G	A	0.00924	ZNF460	+	FALSE
chr17	65335362	T	C	3.02375E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr4	17802956	T	C	0.00351	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	227211026	C	G	0.00373	CDC42BPA	-	FALSE
chr4	185309401	A	G	0.00782	IRF2	-	FALSE
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	179852074	T	C	0.00338	TOR1AIP1	+	FALSE
chr2	68402154	A	T	0.00991	PNO1	+	FALSE
chr1	19543249	T	C	1.15194E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	205057482	A	T	0.00907	RBBP5	-	FALSE
chr12	133334739	T	C	0.00388	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr3	15114288	T	C	7.51597E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr13	31033317	C	T	0.00254	HMGB1	-	FALSE
chr1	10517512	T	C	0.00646		.	FALSE	AluSx1	SINE,Alu
chr1	19595137	C	T	0.00085	AKR7L	-	FALSE
chr4	190883001	C	G	0.00297	FRG1	+	FALSE
chr1	39990456	G	A	0.00749	BMP8A,PPIEL	+,-	FALSE	L2b	SINE,Alu
chr1	116943511	T	C	0.00236	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr4	68483513	G	A	3.54156E-05	UBA6	-	FALSE
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr1	36067760	T	C	0.00044	PSMB2	-	TRUE	AluSz	SINE,Alu
chr10	120795222	A	T	0.00193	EIF3A	-	FALSE
chr5	130537998	A	G	0.00380	LYRM7	+	TRUE	AluSp	SINE,Alu
chr1	145512024	A	G	0.00836	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr17	40176809	A	T	0.00860	NKIRAS2	+	FALSE	AluSz	SINE,Alu
chr1	16933740	T	A	0.00286	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	87811070	G	A	0.00396	LMO4	+	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr17	55752444	C	T	0.00000	MSI2	+	FALSE
chr2	230876757	G	C	0.00321	FBXO36	+	FALSE
chr1	47840953	A	G	0.00404	CMPK1	+	FALSE
chr1	10517508	T	C	0.00034		.	FALSE	AluSx1	SINE,Alu
chr3	40578843	A	G	0.00221	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr1	228880021	C	T	4.50271E-05	RHOU	+	FALSE
chr6	36894341	G	A	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr3	14986453	T	C	1.05842E-07	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr3	15114385	T	C	0.00146	RBSN	-	TRUE	AluY	SINE,Alu
chr2	37327666	T	C	0.00028		.	FALSE
chr1	59147926	T	C	0.00601	MYSM1	-	FALSE
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr5	94050487	T	A	0.00380	MCTP1	-	FALSE
chr22	31744347	A	G	0.00113	LINC01521	+	TRUE	AluSp	SINE,Alu
chr1	10520296	T	C	0.00108		.	FALSE	AluSx	SINE,Alu
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr9	34088028	T	C	0.00854	DCAF12	-	FALSE
chr2	50147867	T	A	0.00896	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr8	25272425	C	T	0.00605	DOCK5	+	FALSE
chr2	152334421	A	G	0.00464		.	FALSE	AluSq	SINE,Alu
chr3	195963397	G	A	0.00037		.	FALSE
chr5	149823786	C	T	0.00327		.	FALSE
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr1	153700841	A	G	0.00508	INTS3	+	FALSE
chr4	2940147	T	C	0.00061	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr1	10521254	T	C	2.63330E-05	DFFA	-	TRUE	AluY	SINE,Alu
chr12	66546100	A	G	0.00849	TMBIM4	-	FALSE
chr1	65692500	T	C	0.00281	AK4	+	FALSE	(T)n	SINE,Alu
chr12	56510696	A	T	0.00015	RPL41	+	FALSE
chr12	125512507	A	G	0.00276		.	FALSE	AluY	SINE,Alu
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr4	44176960	T	C	0.00043	KCTD8	-	FALSE
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr15	93198678	T	C	0.00064	FAM174B	-	FALSE	(GCCGCT)n	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr1	40537941	A	C	0.00489	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	179326847	A	G	0.00021	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	19071752	T	C	0.00503	PAX7	+	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr3	14986399	T	C	1.19850E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr7	127945549	C	T	0.00051	MGC27345	-	FALSE	FLAM_C	SINE,Alu
chr8	48890247	A	G	2.58682E-14	MCM4	+	TRUE	AluJb	SINE,Alu
chr3	42266346	A	G	0.00824	TRAK1	+	FALSE
chr1	77165735	A	G	0.00227		.	FALSE
chr1	11783776	C	A	0.00039		.	FALSE	AluSq	SINE,Alu
chr1	6583066	T	C	0.00088	NOL9	-	TRUE	AluSx4	SINE,Alu
chr8	25272446	A	T	0.00405	DOCK5	+	FALSE
chr1	326539	A	G	0.00719		.	FALSE
chr10	1086810	T	A	0.00245	IDI2-AS1,IDI1	+,-	FALSE
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr3	49051841	C	A	0.00132	WDR6	+	FALSE
chr2	8823952	T	G	1.04377E-05	ID2	+	FALSE
chr1	1447756	G	C	0.00354	ATAD3A	+	FALSE
chr1	95658344	G	A	0.00100	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	24022909	T	A	0.00177	RPL11	+	FALSE
chr2	71376999	G	A	0.00546	MPHOSPH10	+	FALSE
chr1	154554946	C	G	0.00488	ADAR	-	FALSE
chr4	77082799	G	C	0.00148	SCARB2	-	FALSE
chr1	109513497	C	T	0.00186	WDR47	-	FALSE
chr3	45125566	C	T	0.00000	CDCP1	-	FALSE	Charlie8	SINE,Alu
chr2	37328082	T	C	0.00530		.	FALSE
chr2	64859679	T	C	0.00824	SERTAD2	-	FALSE
chr1	1152309	A	T	0.00030	SDF4	-	FALSE
chr1	182569318	G	T	0.00829	RGS16	-	FALSE
chr5	1574319	T	A	0.00158	SDHAP3	-	FALSE
chr1	1345006	A	G	0.00123		.	FALSE	AluSg	SINE,Alu
chr1	45975669	A	G	0.00695	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	109967950	T	A	0.00096	PSMA5	-	FALSE
chr1	150704486	T	C	0.00157	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	160967816	T	C	0.00162	F11R	-	TRUE	AluSp	SINE,Alu
chr3	170893070	G	A	0.00071	TNIK	-	FALSE
chr5	125961204	A	G	0.00196	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	46827871	G	A	0.00014	NSUN4	+	FALSE
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr5	133738270	T	C	5.55380E-10	CDKN2AIPNL	-	TRUE	FRAM	SINE,Alu
chr1	35319550	C	T	0.00781	SMIM12	-	FALSE	AluSg	SINE,Alu
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr4	57326875	A	G	1.03861E-05	PAICS	+	TRUE	AluSx1	SINE,Alu
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr4	56236480	T	A	0.00967	SRD5A3,SRD5A3-AS1	+,-	FALSE
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr1	36067925	T	C	0.00103	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	84971969	G	T	0.00626	GNG5	-	FALSE
chr19	21907988	C	T	0.00295	ZNF100	-	FALSE
chr1	100657416	C	T	0.00058	DBT	-	FALSE	AluJb	SINE,Alu
chr1	142660333	G	A	8.80387E-05		.	FALSE
chr1	95660019	G	T	0.00052	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr3	45721990	A	G	0.00022	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	10521238	T	C	0.00173	DFFA	-	TRUE	AluY	SINE,Alu
chr1	44447004	G	A	0.00768	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr1	46033497	T	C	0.00719	AKR1A1	+	FALSE	AluYk3	SINE,Alu
chr18	691521	T	C	0.00150	ENOSF1	-	TRUE	AluJr	SINE,Alu
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr2	201749994	T	C	0.00496	PPIL3	-	TRUE	AluSx	SINE,Alu
chr1	19670869	A	G	0.00568	CAPZB	-	FALSE
chr17	57281021	A	G	1.37320E-05	PRR11	+	TRUE	AluSz	SINE,Alu
chr2	201774600	T	C	1.56082E-05		.	FALSE	AluJr4	SINE,Alu
chr2	37327662	T	C	0.00220		.	FALSE
chr9	128729384	G	C	0.00059	PBX3	+	FALSE
chr4	17803604	T	C	0.00414	DCAF16	-	TRUE	AluY	SINE,Alu
chr12	133298069	A	G	6.69127E-09	PGAM5	+	TRUE	AluJo	SINE,Alu
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu

RBP	UPF2
Knock-Method	shRNA
RBP Family	MIF4G
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR810FHY
Platform	HiSeq
Pubmed ID	32252787

UPF2 - Target Gene Network