RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr14	77581481	C	A	0.00997	CIPC	+	FALSE
chr10	54069186	C	T	0.00089	PRKG1-AS1	-	FALSE
chr6	143382538	A	T	0.00145	AIG1	+	FALSE
chr2	191745652	A	T	1.16463E-05	GLS	+	FALSE
chr3	63996230	A	T	0.00309	PSMD6-AS2,PSMD6	+,-	FALSE
chr1	182353198	A	T	0.00473	GLUL	-	FALSE
chr2	203741654	T	C	0.00611		.	FALSE	AluJr	SINE,Alu
chr1	45452227	G	C	0.00126	EIF2B3	-	FALSE
chr9	14921850	A	G	0.00112		.	FALSE
chr1	16958047	C	T	2.98219E-05		.	FALSE
chr1	220871123	A	G	0.00854	C1orf115	+	FALSE
chr1	162354204	C	A	0.00193	C1orf226	+	FALSE
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr1	203277253	A	G	0.00624	BTG2	+	FALSE
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr1	10520683	T	C	0.00124	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	155695960	A	G	1.11424E-05	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr1	145512024	A	G	0.00392	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	29644328	C	T	0.00014	PTPRU	+	FALSE
chr2	1636053	A	G	0.00189	PXDN	-	FALSE
chr1	10518733	T	C	0.00541		.	FALSE	AluSx1	SINE,Alu
chr1	145281656	A	T	0.00202	NBPF20,NOTCH2NL	+	FALSE
chr1	120612163	C	A	0.00812	NOTCH2	-	FALSE
chr1	23636277	A	T	0.00632	HNRNPR	-	FALSE
chr1	244219905	G	T	0.00772	ZBTB18	+	FALSE
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	19499560	T	C	0.00226	UBR4	-	FALSE
chr3	86992161	C	G	0.00050	VGLL3	-	FALSE	(GT)n	SINE,Alu
chr6	52365328	T	G	0.00983	TRAM2	-	FALSE	(T)n	SINE,Alu
chr19	13884422	A	G	0.00878	MRI1	+	TRUE	AluJr	SINE,Alu
chr2	201774185	T	C	0.00921		.	FALSE	AluSz	SINE,Alu
chr3	10192652	A	G	0.00155	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	128756737	A	G	8.66859E-06		.	FALSE	AluSx	SINE,Alu
chr1	7737792	C	G	8.96820E-06	CAMTA1	+	FALSE
chr1	3729182	T	C	0.00300	CEP104	-	TRUE	AluSx3	SINE,Alu
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr11	65179817	T	C	0.00599	FRMD8	+	FALSE
chr3	20025679	A	G	0.00292	RAB5A,PP2D1	+,-	FALSE
chr1	110173775	G	T	0.00015	AMPD2	+	FALSE
chr1	16946437	C	T	0.00257	CROCCP2	-	FALSE
chr3	195435168	T	G	0.00111	LINC00969	+	FALSE
chr12	15035081	T	C	0.00951	MGP	-	FALSE
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr1	244572643	C	A	0.00681	ADSS	-	FALSE
chr16	10623531	T	C	1.32618E-09	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	69330284	G	A	0.00373	ANTXR1	+	FALSE	MER91A	SINE,Alu
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	193854148	T	A	0.00106	HES1	+	FALSE
chr2	37330612	T	C	0.00030		.	FALSE	AluSq2	SINE,Alu
chr1	3730400	T	C	0.00800	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	155853251	A	G	0.00207	SYT11	+	TRUE	AluJb	SINE,Alu
chr1	74672474	G	A	0.00014	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	14599	T	A	0.00304	WASH7P	-	FALSE
chr2	29170763	G	A	5.21672E-05	WDR43	+	FALSE
chr1	172410967	G	A	1.85684E-05	C1orf105,PIGC	+,-	FALSE
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	193058937	C	T	0.00652	TROVE2	+	FALSE	AluSc	SINE,Alu
chr22	42908563	C	T	0.00492	SERHL,RRP7A	+,-	FALSE
chr7	156763172	A	G	0.00874	NOM1	+	TRUE	AluSx	SINE,Alu
chr6	3225721	C	G	4.80019E-07	TUBB2B	-	FALSE
chr2	27293351	C	T	0.00314	AGBL5,OST4	+,-	FALSE
chr3	57882601	C	T	0.00987	SLMAP	+	FALSE
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr16	69338754	T	C	0.00210	SNTB2	+	FALSE	AluJr	SINE,Alu
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	16934178	C	T	0.00382	NBPF1	-	FALSE
chr2	11321880	C	T	0.00064	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr1	25894468	C	G	0.00357	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr9	140286415	T	C	0.00254	EXD3	-	FALSE	AluSg	SINE,Alu
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr1	16909220	T	C	0.00029	NBPF1	-	FALSE
chr8	95804490	A	G	0.00219	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr17	38632679	T	G	0.00044	TNS4	-	FALSE	(GT)n	SINE,Alu
chr4	17629434	A	G	0.00661		.	FALSE	AluSx3	SINE,Alu
chr1	65299564	G	T	0.00664	JAK1	-	FALSE
chr5	139931622	T	A	0.00881	SRA1	-	FALSE
chr1	19543353	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	6583270	C	G	0.00026	NOL9	-	FALSE
chr1	204095426	C	T	0.00481	SOX13	+	FALSE
chr1	76227022	A	G	0.00035	ACADM	+	FALSE
chr1	179042482	A	G	0.00079	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr11	65179819	T	C	0.00038	FRMD8	+	FALSE
chr4	177252327	A	G	3.52508E-05	SPCS3	+	TRUE
chr15	33063527	C	T	0.00183	FMN1	-	FALSE	AluYk3	SINE,Alu
chr1	10520099	T	C	0.00659		.	FALSE	AluSx	SINE,Alu
chr1	204096630	T	C	0.00471	SOX13	+	FALSE
chr16	68962	C	T	0.00852		.	FALSE
chr1	179042482	A	G	0.00301	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr3	45960578	G	A	0.00632	FYCO1	-	FALSE
chr1	145290818	C	G	0.00931	NBPF20	+	FALSE
chr10	71647223	A	C	0.00114	COL13A1	+	FALSE
chr1	214524576	T	C	0.00408	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	28661656	A	G	0.00026	MED18	+	TRUE	AluSg	SINE,Alu
chr2	61278017	A	G	8.96590E-05	PEX13	+	TRUE	AluY	SINE,Alu
chr1	89649369	T	C	0.00019	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	211533352	A	G	0.00025	TRAF5	+	FALSE
chr1	46049716	T	G	0.00761	NASP	+	FALSE
chr4	129795660	T	A	0.00454	JADE1	+	FALSE
chr1	179312752	C	T	0.00106	SOAT1	+	FALSE
chr2	174090630	C	A	0.00025	ZAK,MLK7-AS1	+,-	FALSE
chr2	178086785	C	A	0.00808	HNRNPA3	+	FALSE
chr14	75202669	A	G	1.13156E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr11	68523338	T	C	0.00817	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr1	19934893	C	A	0.00171	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr1	19542305	T	C	0.00085	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	42252924	G	C	0.00079	TRAK1	+	FALSE
chr8	1730491	A	G	5.38446E-06	CLN8	+	TRUE	AluSx1	SINE,Alu
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr1	9162224	T	C	0.00372		.	FALSE	AluSx	SINE,Alu
chr19	16661483	T	C	0.00824	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr4	38937372	T	C	0.00388	FAM114A1	+	FALSE
chr4	2940265	T	C	4.71601E-06	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	16933110	T	C	0.00143	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr11	118620064	A	G	0.00192	DDX6	-	FALSE	(A)n	SINE,Alu
chr1	1288481	C	A	0.00013	MXRA8	-	FALSE
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr1	76229185	T	A	0.00280	ACADM	+	FALSE
chr1	100656265	C	T	0.00318	DBT	-	FALSE
chr6	26095454	A	G	0.00284	HFE	+	TRUE	AluY	SINE,Alu
chr1	53289686	A	G	0.00063	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr3	169810030	T	C	0.00659	PHC3	-	TRUE	AluSx	SINE,Alu
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr4	165998714	T	C	0.00254	TMEM192	-	TRUE	AluSg	SINE,Alu
chr2	203741065	T	C	2.92684E-06		.	FALSE
chr1	1251844	T	C	0.00731	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	233518885	T	C	0.00021	MLK4	+	FALSE	(TTTC)n	SINE,Alu
chr2	118854088	C	T	0.00543	INSIG2	+	FALSE
chr7	138730361	T	C	0.00316	ZC3HAV1	-	FALSE	L2-1_AMi	SINE,Alu
chr3	194373832	T	C	0.00053	LSG1	-	FALSE
chr1	33960062	A	G	0.00064	ZSCAN20	+	FALSE
chr1	78029905	T	A	0.00256	ZZZ3	-	FALSE
chr1	45975673	A	G	0.00827	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	1684347	C	T	0.00550	NADK	-	FALSE
chr5	125962175	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chrX	77083915	T	C	0.00075	MAGT1	-	TRUE	AluSz	SINE,Alu
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr7	38764340	T	C	0.00630	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	65147002	C	T	6.62669E-07	CACHD1	+	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr12	12618715	T	C	0.00714	BORCS5	+	FALSE
chr1	53291425	A	G	2.55913E-05	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr1	16928126	G	C	0.00958	NBPF1	-	FALSE	MLT1E3	SINE,Alu
chr1	100548868	T	C	8.06321E-05	MFSD14A	+	FALSE
chr1	179044110	A	G	0.00885	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	35647099	A	G	0.00092	SFPQ	-	FALSE
chr1	53679610	G	A	0.00119	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	120572572	C	T	0.00084	NOTCH2	-	FALSE
chr1	38155698	G	T	0.00368	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr6	31378510	G	A	0.00104		.	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr3	197362030	C	T	0.00302		.	FALSE
chr1	45671429	G	A	0.00054	ZSWIM5	-	FALSE
chr22	18571345	A	G	0.00113	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	6160958	A	G	0.00967	KCNAB2	+	FALSE
chr2	200792052	G	A	0.00378	C2orf69	+	FALSE
chr1	3731655	G	T	0.00985	CEP104	-	FALSE
chr2	203742141	T	C	0.00044		.	FALSE	AluJb	SINE,Alu
chr3	197611048	A	G	0.00064		.	FALSE	AluSx1	SINE,Alu
chr15	85184816	T	C	3.05793E-06	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	51434560	G	A	6.87938E-05	CDKN2C	+	FALSE
chr1	179326879	A	G	0.00232	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	179326882	A	G	0.00020	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	65696034	G	C	0.00803	AK4	+	FALSE
chr1	33149376	A	G	0.00519	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr12	7175047	A	G	0.00634	C1S	+	FALSE
chr15	33064791	G	A	0.00203	FMN1	-	FALSE
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr3	33907945	A	G	3.34896E-07	PDCD6IP	+	FALSE
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr5	96368471	G	T	3.92809E-06		.	FALSE
chr2	171634349	T	A	0.00104	ERICH2	+	FALSE
chr1	36534939	A	G	0.00936		.	FALSE	AluJo	SINE,Alu
chr4	76568479	T	A	0.00825	G3BP2	-	FALSE
chr1	1419752	A	G	7.69134E-06	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr12	54526562	A	T	0.00119	LOC400043	+	FALSE	L2a	SINE,Alu
chr1	10520180	T	C	0.00267		.	FALSE	AluSx	SINE,Alu
chr20	25428617	A	G	0.00622	GINS1	+	FALSE	AluJb	SINE,Alu
chr1	145512014	A	G	0.00144	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr11	118661811	T	G	0.00582	DDX6	-	FALSE
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr1	1597020	C	G	0.00021	CDK11B,SLC35E2B	-	FALSE
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr3	45636213	C	G	0.00240		.	FALSE
chr19	33882222	G	A	0.00236	PEPD	-	FALSE
chr1	62628531	A	G	0.00716	PATJ	+	TRUE	AluSg4	SINE,Alu
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr1	179042550	A	G	0.00831	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr1	86119441	G	A	0.00905	ZNHIT6	-	FALSE
chr1	46075715	A	G	0.00401	NASP	+	TRUE	AluSx4	SINE,Alu
chr11	86646405	C	A	9.05139E-05	PRSS23	+	FALSE	L2b	SINE,Alu
chr1	24934334	A	G	0.00031	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr3	141879810	T	C	0.00348	GK5	-	FALSE	AluJr	SINE,Alu
chr10	865825	C	T	0.00088	LARP4B	-	FALSE
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr16	11931208	A	T	0.00316	RSL1D1	-	FALSE
chr3	196670081	C	G	0.00500	NCBP2-AS2	+	FALSE
chr1	28835934	A	G	3.31538E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr17	47007752	A	T	0.00029	SNF8	-	FALSE
chr3	101284940	T	C	1.85568E-05	TRMT10C	+	FALSE
chr2	86251114	T	C	0.00709		.	FALSE	AluSx	SINE,Alu
chr1	33086876	T	C	0.00672	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	205056301	A	G	0.00506	RBBP5	-	FALSE
chr3	113604709	T	C	0.00012	GRAMD1C	+	FALSE
chr1	173869111	C	G	0.00221		.	FALSE
chr1	201845881	A	C	0.00032	IPO9	+	FALSE
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	36067886	T	C	0.00786	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	11783889	A	G	0.00746		.	FALSE	AluSq	SINE,Alu
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr8	144662353	G	A	0.00951	EEF1D	-	FALSE
chr1	53680205	C	T	9.80404E-07	C1orf123	-	FALSE
chr1	37945905	A	T	0.00038	ZC3H12A	+	FALSE
chr4	6718811	A	G	1.36854E-07	BLOC1S4	+	FALSE	FLAM_A	SINE,Alu
chr1	6682037	G	A	0.00302	PHF13	+	FALSE
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr3	53259329	G	C	0.00036	TKT	-	FALSE
chr1	145513114	A	G	6.80046E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr4	39528976	C	T	8.52335E-05	UGDH	-	FALSE
chr6	31947917	C	T	0.00670		.	FALSE
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr1	44818525	T	C	0.00442	ERI3	-	FALSE
chr2	8996326	C	T	0.00077	MBOAT2	-	FALSE
chr1	45279813	T	C	0.00614		.	FALSE	(TCTT)n	SINE,Alu
chr4	170643973	C	T	0.00232	CLCN3	+	FALSE
chr1	111969752	A	G	0.00531	OVGP1	-	FALSE
chr4	84525973	C	G	0.00148	GPAT3	+	FALSE
chr1	1594315	C	T	0.00347	CDK11B,SLC35E2B	-	FALSE
chr17	41144248	T	G	0.00132	RUNDC1	+	FALSE
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr4	17802819	T	C	0.00747	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	174128513	C	T	0.00069	ZAK,MLK7-AS1	+,-	FALSE
chr2	178129412	G	T	0.00071	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr2	143638992	T	A	0.00089	KYNU	+	FALSE
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr3	49131374	G	C	0.00905	QRICH1	-	FALSE	(CCG)n	SINE,Alu
chr1	27202959	T	C	0.00094		.	FALSE	AluSq2	SINE,Alu
chr8	25272423	G	T	0.00659	DOCK5	+	FALSE
chr10	112596282	C	T	0.00885	RBM20	+	FALSE
chr1	207943188	A	G	0.00263	CD46	+	TRUE	AluSx1	SINE,Alu
chr22	39259540	G	A	0.00493	CBX6	-	FALSE
chr3	196670094	G	C	0.00017	NCBP2-AS2	+	FALSE
chr3	44790781	T	C	0.00887	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	37331065	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu

RBP	GRWD1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR850FEH
Platform	HiSeq
Pubmed ID	32252787

GRWD1 - Target Gene Network