RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	91805816	G	A	2.75786E-10		.	FALSE
chr1	206579798	T	C	0.00476	SRGAP2	+	FALSE
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr9	96438974	C	G	0.00303	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr2	206987136	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr1	92976590	G	A	0.00768	EVI5	-	FALSE
chr3	88104162	T	C	0.00106	CGGBP1	-	FALSE
chr1	138980	G	T	0.00608	LOC729737	-	FALSE
chr2	37328097	T	C	0.00091		.	FALSE
chr1	53291434	A	G	0.00545	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr15	30781885	C	T	0.00380		.	FALSE
chr10	1086810	T	A	0.00245	IDI2-AS1,IDI1	+,-	FALSE
chr1	118409491	A	T	0.00471	GDAP2	-	FALSE	(A)n	SINE,Alu
chr16	747230	C	G	0.00269	FBXL16	-	FALSE
chr19	49468569	G	T	0.00266	FTL	+	FALSE
chr1	1595586	T	C	0.00206	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	206982257	T	C	0.00023		.	FALSE	AluSg7	SINE,Alu
chr19	18476232	A	G	0.00189	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr6	166824702	C	T	0.00587	RPS6KA2	-	FALSE	(T)n	SINE,Alu
chr5	17276088	C	A	0.00171	BASP1	+	FALSE	(TC)n	SINE,Alu
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr1	46125880	T	C	0.00686	GPBP1L1	-	FALSE
chr1	121133995	G	C	0.00575	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	1252180	T	C	0.00021	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr12	9464350	G	C	0.00209	LOC642846	+	FALSE
chr1	204374665	G	A	0.00717	PPP1R15B	-	FALSE
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr15	83685469	T	C	0.00976	BTBD1	-	FALSE
chr12	9848629	A	G	0.00027	CLEC2D	+	FALSE
chr12	80168993	G	T	0.00513	PPP1R12A	-	FALSE
chr1	144917841	T	C	4.47769E-05	NBPF20,PDE4DIP	+,-	FALSE
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	33148006	A	G	0.00110	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr2	220416942	G	C	0.00100	OBSL1	-	FALSE
chr15	102512797	A	G	0.00080	WASH3P	+	FALSE
chr1	231154921	C	T	0.00773	FAM89A	-	FALSE	(T)n	SINE,Alu
chr4	73923056	T	C	0.00077	COX18	-	TRUE	AluSz	SINE,Alu
chr1	10517653	T	C	0.00776		.	FALSE	AluSx1	SINE,Alu
chr1	32827843	G	C	0.00275	FAM229A	-	FALSE
chr6	47594192	C	T	0.00591	CD2AP	+	FALSE
chr2	37331555	T	C	0.00171		.	FALSE	AluJb	SINE,Alu
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	16892277	G	T	0.00021	NBPF1	-	FALSE
chr1	25570692	C	T	0.00095	RSRP1	-	FALSE
chr1	179084080	T	G	0.00926	ABL2	-	FALSE
chr1	53288897	A	G	0.00439	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	178482698	A	G	0.00408	TTC30A	-	FALSE
chr5	40829980	T	C	0.00752		.	FALSE	AluSp	SINE,Alu
chr19	19792288	A	G	0.00379	ZNF101	+	TRUE	AluJb	SINE,Alu
chr12	69159400	G	A	0.00173	SLC35E3	+	FALSE	(AT)n	SINE,Alu
chr8	9639522	A	G	0.00823	TNKS	+	TRUE	MER53	SINE,Alu
chr17	49042289	G	T	0.00737	SPAG9	-	FALSE	AluJb	SINE,Alu
chr20	25428669	A	G	0.00023	GINS1	+	TRUE	AluJb	SINE,Alu
chr3	58306638	A	G	0.00988		.	FALSE	AluSz	SINE,Alu
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr1	1417974	C	T	0.00677	ATAD3B	+	FALSE
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chr16	81064656	A	G	0.00120	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	196557274	C	T	0.00285	PAK2	+	FALSE
chr19	18477337	A	G	0.00085	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr19	13884096	A	G	0.00049	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	16889127	A	G	0.00213	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	38279683	A	T	0.00685	MTF1	-	FALSE
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr1	25169634	A	G	0.00531	CLIC4	+	FALSE
chr1	146647196	T	C	0.00241		.	FALSE	THE1D	SINE,Alu
chr5	176863519	G	C	0.00567	GRK6	+	FALSE
chr1	16932845	T	G	0.00732	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr12	123253723	A	G	0.00371	DENR	+	TRUE	(AT)n	SINE,Alu
chr1	213069114	C	A	0.00681	FLVCR1	+	FALSE
chr1	111969752	A	G	0.00531	OVGP1	-	FALSE
chr1	160965379	T	C	0.00477	F11R	-	TRUE	AluSc	SINE,Alu
chr13	32973012	A	C	0.00231	BRCA2	+	FALSE
chr1	16892918	T	C	0.00158	NBPF1	-	FALSE
chr12	98943187	A	G	2.29648E-09	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	109419841	C	T	0.00057	GPSM2	+	FALSE
chr3	196557357	G	T	0.00615	PAK2	+	FALSE
chr1	10520532	T	C	0.00142		.	FALSE	AluSx1	SINE,Alu
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr1	43629982	C	T	0.00733	EBNA1BP2	-	FALSE
chr1	1337334	G	T	0.00549	LOC148413,MRPL20	+,-	FALSE
chr1	19543456	T	C	0.00011	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr18	47918818	A	G	3.50049E-05	SKA1	+	TRUE	AluJb	SINE,Alu
chr1	100549715	T	A	0.00765	SASS6	-	FALSE
chr5	139931622	T	A	0.00881	SRA1	-	FALSE
chr1	41088377	C	T	8.47840E-10	RIMS3	-	FALSE
chr15	41590932	A	G	0.00055	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr2	113513825	T	C	2.13681E-05	CKAP2L	-	FALSE
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr11	31452788	A	G	0.00239	DNAJC24	+	TRUE	AluSx1	SINE,Alu
chr1	121115958	T	C	0.00818	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr1	118503786	A	G	0.00135	SPAG17	-	FALSE	AluSx3	SINE,Alu
chr1	179326296	A	G	0.00171	SOAT1	+	TRUE
chr2	3627302	A	T	0.00021	RPS7	+	FALSE
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	93603177	T	C	0.00364	MTF2	+	FALSE
chr6	36894337	G	A	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr4	77057501	A	G	0.00547	NUP54	-	FALSE
chr5	122165501	A	T	0.00051	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	157043632	C	T	0.00085		.	FALSE
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr2	29170763	G	A	5.21672E-05	WDR43	+	FALSE
chr3	129286413	G	C	2.51503E-06	PLXND1	-	FALSE
chr1	10517689	T	C	0.00504		.	FALSE	AluSx1	SINE,Alu
chr1	16932144	A	C	0.00559	NBPF1	-	FALSE
chr8	11700444	C	G	0.00042	CTSB	-	FALSE	AluSq2	SINE,Alu
chr1	144595886	G	A	0.00242	NBPF20	+	FALSE	AluJb	SINE,Alu
chr3	62189465	C	T	2.69664E-05	PTPRG	+	FALSE
chr1	19542239	T	C	0.00043	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	110173775	G	T	0.00038	AMPD2	+	FALSE
chr1	28921019	A	G	0.00030	RAB42	+	TRUE	AluSx	SINE,Alu
chr3	15114395	T	C	0.00333	RBSN	-	TRUE	AluY	SINE,Alu
chr1	179326879	A	G	0.00232	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	98409998	G	T	0.00261	TMEM131	-	FALSE
chr1	179811936	T	C	0.00229	TOR1AIP2	-	FALSE	AluY	SINE,Alu
chr9	130268408	T	C	6.51633E-05	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr3	10192784	A	G	1.73909E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	160231910	A	T	0.00051	DCAF8	-	FALSE
chr14	103372464	C	A	0.00577	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr1	9161245	T	C	0.00071		.	FALSE	AluSx	SINE,Alu
chr2	206858904	C	T	0.00783	INO80D	-	FALSE
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr7	56079033	T	C	0.00300	PSPH	-	TRUE	AluYm1	SINE,Alu
chr8	56985609	G	T	0.00134	RPS20	-	FALSE
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr2	103333653	T	C	0.00426	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr5	180682611	C	A	9.20591E-05	CTC-338M12.4	+	FALSE
chr4	17804740	T	C	0.00015	DCAF16	-	TRUE	AluSx	SINE,Alu
chr6	7289958	C	G	0.00893	SSR1	-	FALSE
chr1	21102502	C	A	0.00021	HP1BP3	-	FALSE
chr1	24288535	A	T	0.00271	PNRC2	+	FALSE
chr3	195963500	C	T	0.00014		.	FALSE
chr3	98307696	T	G	3.25383E-09	CPOX	-	FALSE
chr5	43574976	T	C	0.00613	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr3	33138549	G	A	0.00612	GLB1	-	FALSE
chr1	117117182	C	T	0.00270	IGSF3	-	FALSE
chr5	125961534	A	G	0.00233	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	109181304	C	A	0.00592	FAM102B	+	FALSE
chr1	183486859	G	A	0.00831	SMG7	+	FALSE
chr2	234203547	T	C	0.00476	ATG16L1	+	FALSE
chr1	180854783	T	C	0.00292	XPR1	+	FALSE
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr1	32799530	C	A	8.96009E-06	MARCKSL1	-	FALSE
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr13	96506664	A	G	5.36176E-05	UGGT2	-	FALSE
chr1	46076468	A	G	0.00069	NASP	+	TRUE	AluSx	SINE,Alu
chr1	241794056	C	A	0.00753	OPN3,CHML	-	FALSE
chr2	178084651	A	G	1.09207E-09	HNRNPA3	+	FALSE
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr1	45120664	C	T	0.00437	TMEM53	-	FALSE
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	176042866	A	T	0.00596	ATP5G3	-	FALSE
chr1	143399383	T	A	0.00053		.	FALSE	L1MC4	SINE,Alu
chr1	36067833	T	C	3.75622E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr22	31375020	T	A	0.00990	TUG1	+	FALSE
chr12	120898554	A	G	0.00124	GATC	+	TRUE	AluY	SINE,Alu
chr1	118068558	G	A	0.00644		.	FALSE
chr1	1683565	G	A	7.19943E-05	NADK	-	FALSE
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	53288974	A	T	0.00265	ZYG11B	+	FALSE	AluJo	SINE,Alu
chr1	100654769	T	C	0.00318	DBT	-	TRUE	AluSz	SINE,Alu
chr1	27248275	C	T	0.00047	NUDC	+	FALSE
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chr1	113212974	A	T	0.00424	CAPZA1	+	FALSE
chr1	45975286	A	G	0.00200	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	10519947	T	C	0.00323		.	FALSE	AluJr	SINE,Alu
chr2	206985727	C	T	0.00786		.	FALSE	MIRc	SINE,Alu
chr5	149363214	A	G	0.00040	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	176176230	G	A	0.00091	RFWD2	-	FALSE
chr1	59122059	G	A	0.00476	MYSM1	-	FALSE
chr5	37290493	T	C	3.58668E-05		.	FALSE	AluSz	SINE,Alu
chr7	44917281	T	C	0.00222	PURB	-	TRUE	AluSz	SINE,Alu
chr1	179042551	A	G	0.00336	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr3	181430334	G	A	0.00305	SOX2-OT,SOX2	+	FALSE
chr1	247319707	C	T	3.10675E-05	ZNF124	-	FALSE
chr5	149829072	G	T	0.00816	RPS14	-	FALSE
chr3	197362030	C	T	0.00302		.	FALSE
chr17	3561396	C	T	0.00322	CTNS	+	FALSE
chr1	33148118	A	G	0.00374	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr10	61549818	A	G	0.00879	CCDC6	-	FALSE
chr12	27953264	A	T	0.00688	KLHL42	+	FALSE
chr1	6282401	T	C	0.00806	ICMT	-	TRUE	AluSz	SINE,Alu
chr18	60998527	C	G	0.00078	KDSR	-	FALSE	(AGAGAGAC)n	SINE,Alu
chr17	53239140	C	T	0.00954	STXBP4	+	FALSE	MIR	SINE,Alu
chr1	100656265	C	T	0.00318	DBT	-	FALSE
chr5	157185319	A	G	0.00100	LSM11	+	TRUE	AluSq	SINE,Alu
chr3	196080528	T	C	0.00700	UBXN7	-	TRUE	AluSx	SINE,Alu
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr1	154554946	C	G	0.00488	ADAR	-	FALSE
chr1	900719	T	A	0.00436	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	6282324	T	C	0.00142	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	1252248	A	G	0.00503	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr4	26433556	A	C	3.10862E-15	RBPJ	+	FALSE
chr1	19542464	T	C	0.00140	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	155695985	A	G	0.00031	DAP3	+	TRUE	AluSp	SINE,Alu
chr16	10625108	T	C	7.88488E-10	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	28825337	A	G	0.00099	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr5	122359498	A	C	0.00362	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	99164434	G	A	0.00309	SNX7	+	FALSE
chr1	149885583	A	G	0.00030	SV2A	-	FALSE
chr2	55516908	A	G	0.00016	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr17	42877584	T	C	0.00489	GJC1	-	TRUE	AluSg	SINE,Alu
chr5	7878179	C	T	0.00014	MTRR	+	FALSE
chr7	29960462	G	A	5.89775E-06	SCRN1	-	FALSE
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr1	9330479	C	T	0.00352	H6PD	+	FALSE
chr2	242512138	A	G	9.62871E-05	BOK	+	FALSE
chr1	16889502	T	C	0.00516	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr7	100957851	T	C	0.00028	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu

RBP	PPIG
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR620HAA
Platform	HiSeq
Pubmed ID	32252787

PPIG - Target Gene Network