RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	108113839	T	C	0.00027	VAV3	-	FALSE
chr3	44791398	T	C	0.00204	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr16	48386442	A	G	0.00964	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr3	121351277	A	T	0.00388	HCLS1	-	FALSE
chr1	9643028	A	G	0.00017		.	FALSE	AluSx	SINE,Alu
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr3	178954055	T	C	0.00308	PIK3CA	+	FALSE
chr1	44088568	G	A	0.00274	PTPRF	+	FALSE	A-rich	SINE,Alu
chr2	38971637	G	A	2.13337E-05	SRSF7	-	FALSE
chr2	178406768	T	A	0.00416	AGPS	+	FALSE
chr1	55316322	A	G	0.00172	DHCR24	-	FALSE
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	54571374	A	G	0.00280	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	28824041	T	A	0.00872	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	2336210	C	T	0.00206	RER1	+	FALSE
chr10	63829539	C	T	0.00918	ARID5B	+	FALSE
chr5	140720886	A	G	0.00980	PCDHGA1,PCDHGA2	+	FALSE
chr3	66024384	G	C	0.00096	MAGI1	-	FALSE
chr16	48387215	A	G	0.00864	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	7181560	G	A	0.00599	RNF144A	+	FALSE
chr1	59121768	G	C	0.00196	MYSM1	-	FALSE
chr20	45839076	A	T	0.00178	ZMYND8	-	FALSE	(T)n	SINE,Alu
chr1	19543465	T	C	0.00117	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr19	53155674	T	C	1.27993E-05	ZNF83	-	TRUE	AluSg	SINE,Alu
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr1	145369709	A	G	0.00258	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr1	38002251	G	C	0.00624	SNIP1	-	FALSE
chr1	16890639	C	T	5.60894E-05	NBPF1	-	FALSE
chr1	109605648	A	G	0.00033		.	FALSE	AluY	SINE,Alu
chr1	53289940	A	G	0.00245	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr20	18468339	T	C	0.00062	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr1	182353198	A	T	0.00985	GLUL	-	FALSE
chr1	89649462	T	C	2.70922E-05	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	36068052	G	T	1.69686E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr2	36704034	A	G	9.89157E-05	CRIM1	+	FALSE
chr1	110201699	T	C	0.00513	GSTM4	+	FALSE
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr14	75202402	A	G	0.00141	FCF1	+	TRUE	AluSc	SINE,Alu
chr3	176739663	A	G	5.46505E-07	TBL1XR1	-	FALSE
chr14	75202373	A	G	0.00019	FCF1	+	FALSE	AluSc	SINE,Alu
chr11	28134974	C	A	0.00479	METTL15	+	FALSE
chr1	14113455	G	A	0.00647	PRDM2	+	FALSE
chr2	217366196	T	A	0.00207		.	FALSE
chr1	45987539	C	A	0.00660	PRDX1	-	FALSE
chr17	76799795	G	A	0.00363	USP36	-	FALSE
chr1	168218522	A	G	0.00153		.	FALSE	AluSz	SINE,Alu
chr1	9162223	T	C	0.00997		.	FALSE	AluSx	SINE,Alu
chr1	179327008	A	G	0.00168	SOAT1	+	TRUE
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr2	216908679	C	T	0.00988	PECR	-	FALSE
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr1	205738302	G	A	0.00247	RAB29	-	FALSE
chr3	197612334	A	G	0.00070		.	FALSE	AluSp	SINE,Alu
chrX	123045407	A	G	0.00153	XIAP	+	TRUE	AluJo	SINE,Alu
chr4	2940147	T	C	0.00036	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	29135468	C	G	0.00262	WDR43	+	FALSE
chr1	148753329	A	G	7.42327E-05		.	FALSE
chr1	40219280	T	C	8.82951E-05	PPIE	+	FALSE
chr14	90509582	T	C	0.00017	TDP1	+	FALSE
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr3	47628808	A	T	0.00792	SMARCC1	-	FALSE
chr1	36067760	T	C	0.00024	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	27107650	T	A	3.71504E-05	ARID1A	+	FALSE
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr1	114940228	C	T	0.00734	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	109865630	C	T	0.00647	SORT1	-	FALSE
chr5	40832557	G	T	5.89786E-05	RPL37	-	FALSE
chr2	128060859	T	A	0.00016	MAP3K2	-	FALSE
chr19	3121451	C	T	0.00567	GNA11	+	FALSE
chr1	3545194	C	G	0.00044	TPRG1L	+	FALSE
chr17	73702478	G	C	8.31704E-05	SAP30BP	+	FALSE
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr2	203741602	T	C	0.00581		.	FALSE	AluJr	SINE,Alu
chr3	176739694	T	C	1.91391E-08	TBL1XR1	-	FALSE
chr3	14986447	T	C	2.03372E-08	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	10521172	T	C	0.00244	DFFA	-	TRUE	AluY	SINE,Alu
chr10	13320126	T	A	0.00830	PHYH	-	FALSE
chr1	45671434	G	C	0.00819	ZSWIM5	-	FALSE
chr5	125962175	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chr19	42376710	A	G	1.82395E-05		.	FALSE	AluSp	SINE,Alu
chr19	42376675	A	G	0.00085		.	FALSE
chr17	25640011	A	G	0.00228	WSB1	+	TRUE	AluSx	SINE,Alu
chr1	15904318	C	T	0.00109	AGMAT	-	FALSE
chr1	114306369	A	T	0.00834	RSBN1	-	FALSE
chr3	42826041	T	G	0.00019	HIGD1A	-	FALSE
chr2	37330506	T	C	0.00140		.	FALSE	AluSq2	SINE,Alu
chr1	179044100	A	G	0.00487	FAM20B	+	TRUE	AluSx	SINE,Alu
chr2	234183368	A	G	0.00369	ATG16L1	+	FALSE
chr2	172413267	G	C	0.00938	CYBRD1	+	FALSE
chr2	217366674	A	G	0.00219		.	FALSE	AluSz	SINE,Alu
chr10	89005496	T	G	0.00138	NUTM2A-AS1	-	FALSE	MSTB1	SINE,Alu
chr1	33149495	A	G	0.00675	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr1	46075171	A	C	0.00280	NASP	+	FALSE	A-rich	SINE,Alu
chr1	10517564	T	C	0.00371		.	FALSE	AluSx1	SINE,Alu
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr1	157963370	C	G	0.00445	KIRREL	+	FALSE
chr1	144053664	A	C	0.00050		.	FALSE
chr1	94351063	A	T	0.00907	GCLM	-	FALSE
chr1	100203693	G	A	0.00142	FRRS1	-	FALSE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr5	40832553	A	T	0.00121	RPL37	-	FALSE
chr1	231377081	C	T	6.17358E-06	GNPAT	+	FALSE
chr1	210025751	G	A	0.00067	DIEXF	+	FALSE	Tigger4a	SINE,Alu
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr2	74333235	C	T	0.00022	TET3	+	FALSE
chr1	201438095	C	G	3.49736E-05	PHLDA3	-	FALSE
chr1	16912029	C	G	0.00177	NBPF1	-	FALSE
chr1	214524178	T	C	0.00265	PTPN14	-	TRUE	AluSx	SINE,Alu
chr1	16952481	A	G	0.00093	CROCCP2	-	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr17	65335459	T	C	5.16289E-08	PSMD12	-	TRUE	AluSx	SINE,Alu
chr5	149823795	A	T	0.00261	RPS14	-	FALSE
chr4	144442611	T	C	0.00899	SMARCA5	+	FALSE
chr13	50102992	T	C	0.00956	SETDB2-PHF11,PHF11	+	FALSE	L2a	SINE,Alu
chr15	102516512	G	A	0.00041	WASH3P	+	FALSE
chr9	125609943	A	G	0.00247		.	FALSE
chr3	141667460	T	G	0.00193	TFDP2	-	FALSE
chr7	44918732	T	C	0.00039	PURB	-	FALSE	AluSg	SINE,Alu
chr3	49395695	A	C	0.00159	GPX1	-	FALSE
chr2	113287200	C	T	0.00087	TTL	+	FALSE	(T)n	SINE,Alu
chr1	144851999	A	C	0.00385	NBPF20,PDE4DIP	+,-	FALSE
chr1	179044206	A	G	0.00458	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	93803490	T	C	0.00572	CCDC18-AS1	-	FALSE	AluJr	SINE,Alu
chr1	16921146	T	C	0.00382	NBPF1	-	FALSE
chr1	20976174	T	C	0.00103	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	1647814	T	C	0.00123	CDK11B,CDK11A	-	FALSE
chr4	1228741	G	A	0.00095	CTBP1	-	FALSE
chr7	115898258	A	T	0.00314	TES	+	FALSE	(T)n	SINE,Alu
chr5	179720333	A	G	0.00308		.	FALSE
chr12	25358969	T	G	0.00965	KRAS	-	FALSE
chr12	133297961	A	G	1.06136E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	114443474	A	G	9.14620E-06	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	145322843	C	T	0.00271	NBPF20,NBPF10	+	FALSE
chr4	39550085	T	C	3.55103E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr4	56282224	A	G	0.00485	TMEM165	+	TRUE	AluJb	SINE,Alu
chr14	75202287	T	C	0.00757	FCF1	+	FALSE	AluSc	SINE,Alu
chr5	134302899	A	G	0.00025		.	FALSE	AluSq2	SINE,Alu
chr3	196556843	G	A	4.00732E-06	PAK2	+	FALSE
chr1	235392546	T	C	0.00312	ARID4B	-	FALSE
chr7	100804140	C	T	0.00377	AP1S1	+	FALSE
chr8	23087535	A	G	0.00491	LOC389641	+	FALSE	AluSx1	SINE,Alu
chr1	67518534	C	T	0.00030	SLC35D1	-	FALSE
chr1	43272842	A	T	5.86577E-06	SVBP	-	FALSE
chr1	109967951	A	C	0.00095	PSMA5	-	FALSE
chr2	99772827	A	G	0.00108	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr5	140482871	T	G	0.00650	PCDHB3	+	FALSE
chr1	19653870	T	C	0.00477	PQLC2	+	FALSE
chr2	191556844	T	C	0.00024	NAB1	+	FALSE
chr4	54244053	G	C	0.00726	FIP1L1	+	FALSE	(CGGAG)n	SINE,Alu
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr1	1252749	T	C	0.00875	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	32532849	A	G	0.00909		.	FALSE	AluSx1	SINE,Alu
chr1	38002068	C	T	0.00962	SNIP1	-	FALSE
chrX	123045381	A	G	0.00893	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	118502757	G	A	0.00793	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr12	1602602	A	G	8.31525E-05	ERC1	+	FALSE	AluSx	SINE,Alu
chr7	2294401	A	G	0.00035	SNX8	-	FALSE
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr6	41900765	A	G	0.00256	BYSL	+	FALSE
chr3	86991598	G	T	0.00179	VGLL3	-	FALSE
chr12	98943103	A	G	0.00528	TMPO	+	TRUE	AluSz	SINE,Alu
chr6	74133990	T	C	0.00201		.	FALSE	AluY	SINE,Alu
chr7	100072031	T	C	0.00238	TSC22D4	-	FALSE
chr4	57326291	A	G	0.00017	PAICS	+	TRUE	AluJr	SINE,Alu
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr12	1085978	T	A	0.00421	RAD52	-	FALSE	L2	SINE,Alu
chr7	156764972	G	A	0.00871	NOM1	+	FALSE
chr11	94606941	T	C	0.00699	AMOTL1	+	FALSE
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr1	144828795	C	G	0.00887	NBPF20,NBPF9	+	FALSE
chr2	20449068	A	G	0.00014	PUM2	-	FALSE
chr3	160286646	C	T	0.00086		.	FALSE
chr19	23542157	T	C	0.00140	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	1252443	T	C	8.33820E-06	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	66419942	A	G	0.00284	SLC25A26	+	FALSE
chr1	179044169	A	G	0.00039	FAM20B	+	TRUE	AluSx	SINE,Alu
chr5	125961455	A	G	0.00029	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	115259768	T	C	0.00156	CSDE1	-	FALSE
chr1	179876988	C	G	0.00045	TOR1AIP1	+	FALSE
chr1	11347152	A	T	0.00401	UBIAD1	+	FALSE
chr6	43582750	A	G	0.00844	POLH	+	TRUE	AluSx1	SINE,Alu
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	184766301	T	C	0.00025	VPS8	+	FALSE
chr1	78414329	G	A	0.00874	FUBP1	-	FALSE	A-rich	SINE,Alu
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	160967816	T	C	0.00162	F11R	-	TRUE	AluSp	SINE,Alu
chr1	212254067	G	A	0.00714	DTL	+	FALSE
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr1	114515717	G	A	0.00018	HIPK1	+	FALSE
chr1	46075612	A	G	0.00153	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr2	24225542	A	G	0.00348		.	FALSE	AluSq2	SINE,Alu
chr19	59095573	A	G	0.00169	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	36770605	C	T	8.58098E-05	THRAP3	+	FALSE	(T)n	SINE,Alu
chr2	1636053	A	G	0.00189	PXDN	-	FALSE
chr3	78646942	T	G	0.00093	ROBO1	-	FALSE
chr1	16890130	A	C	0.00728	NBPF1	-	FALSE
chr6	31132911	C	T	0.00000		.	FALSE
chr1	87811103	T	G	0.00028	LMO4	+	FALSE
chr4	185549875	A	T	0.00616	CASP3	-	FALSE
chr2	47604176	C	T	0.00328	EPCAM	+	FALSE
chr3	113604709	T	C	0.00012	GRAMD1C	+	FALSE
chr2	61405795	G	T	0.00061	AHSA2	+	FALSE
chr19	13054905	T	C	0.00324	CALR	+	FALSE	(T)n	SINE,Alu
chr2	105883650	T	G	0.00086	TGFBRAP1	-	FALSE
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr1	201845903	A	G	0.00041	IPO9	+	FALSE
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr1	53290298	A	G	0.00063	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chrX	133930368	T	G	0.00126	FAM122B	-	FALSE	G-rich	SINE,Alu
chr1	28662182	A	G	0.00402	MED18	+	TRUE	AluSq2	SINE,Alu
chr10	75009585	T	C	2.45347E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr3	10193797	A	G	0.00199	VHL	+	TRUE	AluSx	SINE,Alu
chr1	9161090	A	G	0.00068		.	FALSE	AluJb	SINE,Alu
chr3	196080531	T	C	0.00952	UBXN7	-	TRUE	AluSx	SINE,Alu
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	16929327	C	T	0.00315	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr7	91742141	T	A	0.00620	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr1	197093361	G	A	8.55632E-06	ASPM	-	FALSE
chr2	219460472	T	C	0.00187	CNOT9	+	FALSE
chr3	124950421	T	A	0.00713	ZNF148	-	FALSE
chr2	30748507	C	T	0.00103	LCLAT1	+	FALSE
chr1	109818158	C	T	0.00628	CELSR2	+	FALSE
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr1	150704483	T	C	0.00028	CTSS	-	TRUE	AluJo	SINE,Alu
chr2	37331065	T	C	0.00017		.	FALSE	AluSx1	SINE,Alu
chr1	89851328	A	G	0.00028	GBP6	+	FALSE	AluSz	SINE,Alu
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr3	122293773	A	T	0.00147	DTX3L	+	FALSE
chr2	132481508	C	G	0.00093	C2orf27A	+	FALSE
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr19	10795968	C	T	0.00700	ILF3	+	FALSE
chr1	32801745	A	G	0.00357	MARCKSL1	-	FALSE
chr2	191556849	A	T	0.00158	NAB1	+	FALSE
chr7	20177519	T	C	0.00885	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	149943157	G	A	0.00024	OTUD7B	-	FALSE
chr1	235715523	A	G	0.00660	GNG4	-	FALSE
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu

RBP	SUB1
Knock-Method	shRNA
RBP Family	PC4
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR997FOT
Platform	HiSeq
Pubmed ID	32252787

SUB1 - Target Gene Network