RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr6	43582795	A	G	0.00087	POLH	+	TRUE	AluSx1	SINE,Alu
chr11	118661811	T	G	0.00582	DDX6	-	FALSE
chr4	123816376	A	T	0.00445	FGF2,NUDT6	+,-	FALSE
chr1	145513114	A	G	6.80046E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	10520672	T	C	0.00584	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr2	47085954	C	T	0.00805	LINC01119	+	FALSE
chr8	104082307	C	T	0.00675	ATP6V1C1	+	FALSE	L1ME3G	SINE,Alu
chr3	5258236	G	C	3.37681E-06	EDEM1	+	FALSE
chr1	148932848	A	G	0.00715	LOC645166	+	FALSE
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr1	19234174	A	G	0.00046	IFFO2	-	FALSE
chr1	100490067	A	G	0.00267	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr17	46803538	C	T	0.00492	HOXB13	-	FALSE
chr1	182569291	A	T	0.00979	RGS16	-	FALSE
chr7	20177525	T	C	0.00052	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr8	38829416	A	G	0.00695	PLEKHA2	+	TRUE	AluYc	SINE,Alu
chr7	28860031	A	T	0.00017	CREB5	+	FALSE
chr2	174090636	T	A	0.00320	ZAK,MLK7-AS1	+,-	FALSE
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr1	145689491	A	G	0.00701	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr22	37962318	T	C	0.00884	CDC42EP1	+	FALSE
chr1	1595538	T	C	0.00718	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr2	37331119	T	C	0.00122		.	FALSE	AluSx1	SINE,Alu
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	209602381	G	A	0.00057	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr1	144828764	G	T	0.00976	NBPF20,NBPF9	+	FALSE
chr10	96090672	A	G	0.00018		.	FALSE
chr3	191114309	A	T	0.00209	CCDC50	+	FALSE
chr3	141667632	T	G	1.45044E-05	TFDP2	-	FALSE
chr2	25042625	C	G	0.00766	CENPO,ADCY3	+,-	FALSE
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr4	119956116	G	T	0.00442	SYNPO2	+	FALSE
chr1	149913731	T	C	0.00198	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	220231254	T	C	0.00974	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE
chr3	14986110	T	C	0.00691	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr2	178084651	A	G	1.09207E-09	HNRNPA3	+	FALSE
chr2	201774600	T	C	1.56082E-05		.	FALSE	AluJr4	SINE,Alu
chr12	72182168	G	C	0.00867	RAB21	+	FALSE
chr1	41326886	C	G	0.00085	CITED4	-	FALSE
chr1	21070406	C	A	0.00671	HP1BP3	-	FALSE	AluSx	SINE,Alu
chr1	11782984	A	G	0.00542		.	FALSE	AluSx	SINE,Alu
chr7	44918672	T	C	0.00150	PURB	-	TRUE	AluSg	SINE,Alu
chr5	171533782	T	C	0.00039	STK10	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	144822294	G	C	0.00371	NBPF20,NBPF9	+	FALSE
chr12	69237056	A	G	0.00372	MDM2	+	TRUE
chr6	74134869	T	C	0.00024	MB21D1	-	TRUE	AluSz	SINE,Alu
chr1	1252443	T	C	0.00392	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	176742501	G	A	0.00707	TBL1XR1	-	FALSE	(A)n	SINE,Alu
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	53250625	T	C	0.00178	ZYG11B	+	FALSE
chr1	120839680	A	C	0.00584	FAM72B	+	FALSE
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr2	74645427	A	G	0.00011	C2orf81	-	FALSE
chr2	203744240	T	C	0.00595		.	FALSE	AluSx	SINE,Alu
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr1	10517300	T	C	0.00011		.	FALSE	AluJr	SINE,Alu
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr16	80636805	T	G	0.00766	CDYL2	-	FALSE
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr7	5410425	G	C	0.00043	TNRC18	-	FALSE	(CACCGC)n	SINE,Alu
chr17	5336210	T	C	0.00868	RPAIN,C1QBP	+,-	FALSE
chr1	26143728	C	T	0.00800	SEPN1	+	FALSE	AluSx	SINE,Alu
chrX	24095066	G	T	0.00603	EIF2S3	+	FALSE
chr1	1325721	C	T	0.00471	CCNL2	-	FALSE
chr1	10517958	G	A	0.00149		.	FALSE
chr1	36534736	A	G	0.00016		.	FALSE	AluJo	SINE,Alu
chr1	212910930	G	A	2.01027E-05	NSL1	-	FALSE
chr1	31905886	C	A	0.00226	SERINC2	+	FALSE
chr1	16717888	G	A	0.00979	SZRD1	+	FALSE
chr2	85621889	C	T	0.00366	CAPG	-	FALSE
chr3	183861750	A	C	1.09807E-05	EIF2B5	+	FALSE
chr1	32385071	T	A	0.00436	PTP4A2	-	FALSE
chr3	148748257	C	G	0.00989	HLTF	-	FALSE
chr1	109818151	T	C	0.00855	CELSR2	+	FALSE
chr1	6283558	A	T	0.00624	ICMT	-	FALSE
chr12	53936878	G	T	0.00036	ATF7	-	FALSE
chr4	57796758	T	A	6.82460E-05	REST	+	FALSE
chr2	54896395	A	C	0.00051	SPTBN1	+	FALSE
chr2	28639641	C	G	0.00431		.	FALSE
chr3	88104159	A	C	0.00279	CGGBP1	-	FALSE
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chrX	102613351	A	G	0.00969	TCEAL9	+	FALSE	L1ME4a	SINE,Alu
chr11	8708789	A	G	0.00237	RPL27A	+	TRUE	AluSp	SINE,Alu
chr7	44839297	A	T	0.00777	PPIA	+	FALSE
chr1	153907287	G	C	0.00159	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr6	42856959	A	G	6.63353E-07	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr6	108363821	T	C	0.00769	OSTM1	-	TRUE	AluJb	SINE,Alu
chr3	148748198	G	A	3.62985E-05	HLTF	-	FALSE
chr1	54691922	T	A	0.00219	SSBP3	-	FALSE
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr1	145688973	A	G	8.24717E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	28662199	A	G	0.00011	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr10	79800436	T	G	0.00308	RPS24	+	FALSE
chr2	37331555	T	C	0.00171		.	FALSE	AluJb	SINE,Alu
chr8	41401497	A	G	0.00051	LOC102723729,GINS4	+,-	FALSE	AluSq2	SINE,Alu
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr4	187628394	G	A	0.00000	FAT1	-	FALSE
chr1	148751869	A	G	0.00011		.	FALSE
chr16	58054472	T	C	0.00530	USB1	+	FALSE
chr2	37328082	T	C	0.00243		.	FALSE
chr1	38327700	T	C	0.00132	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr17	65335477	T	C	2.02482E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	113672569	A	G	0.00674		.	FALSE	AluJb	SINE,Alu
chr5	139931626	T	G	0.00490	SRA1	-	FALSE
chr1	180247474	T	C	0.00022		.	FALSE
chr12	10311410	A	G	0.00909	OLR1	-	FALSE
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr6	24720271	T	G	0.00839		.	FALSE
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr2	178129412	G	T	0.00071	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr1	145281408	C	T	0.00220	NBPF20,NOTCH2NL	+	FALSE
chr1	25893932	T	C	0.00866	LDLRAP1	+	FALSE
chr1	145283718	G	A	0.00989	NBPF20,NOTCH2NL	+	FALSE
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr1	9663444	C	T	0.00140	TMEM201	+	FALSE
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr12	6572048	A	G	0.00410	VAMP1	-	FALSE
chr17	65334725	T	C	2.56338E-07	PSMD12	-	TRUE	AluSq	SINE,Alu
chr8	145159712	A	G	0.00402	MAF1	+	FALSE
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	42266349	C	T	0.00942	TRAK1	+	FALSE
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr1	118472402	T	G	0.00342	WDR3	+	FALSE
chr1	117645998	A	G	0.00434		.	FALSE
chr1	19542401	T	C	0.00052	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr6	29911970	G	A	0.00284		.	FALSE
chr6	24719404	C	A	0.00024		.	FALSE
chr1	46774813	C	G	0.00766	UQCRH	+	FALSE
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr1	55207985	G	A	0.00156	MROH7-TTC4,TTC4	+	FALSE
chr4	7761567	C	G	1.89283E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	145369709	A	G	0.00073	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr11	67782827	G	A	0.00163	ALDH3B1	+	FALSE
chr1	9642832	C	A	0.00082		.	FALSE
chr1	246714587	G	A	0.00023	TFB2M	-	FALSE
chr3	196670081	C	G	0.00500	NCBP2-AS2	+	FALSE
chr1	16889414	T	C	0.00012	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	22161275	G	A	0.00600	HSPG2	-	FALSE
chr16	66923393	A	G	0.00228	PDP2	+	TRUE	AluSz	SINE,Alu
chr9	19376249	G	T	5.55883E-05		.	FALSE
chr1	94703005	C	G	0.00180	ARHGAP29	-	FALSE
chr1	220231347	T	C	2.85871E-07	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	10517306	T	C	0.00022		.	FALSE	AluJr	SINE,Alu
chr1	91486839	T	C	0.00514	ZNF644	-	FALSE
chr3	196670099	A	C	6.06146E-06	NCBP2-AS2	+	FALSE
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr6	42855972	A	G	0.00182	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr7	6501831	T	A	0.00170	KDELR2	-	FALSE
chr1	203709034	A	G	0.00049	ATP2B4	+	FALSE
chr1	206579936	A	G	0.00747	SRGAP2	+	FALSE
chr16	10623688	T	C	0.00766	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	20976589	C	T	0.00407	PINK1,PINK1-AS	+,-	FALSE
chr1	43391826	G	T	0.00202	SLC2A1	-	FALSE
chr2	61764895	C	A	0.00862	XPO1	-	FALSE	(AC)n	SINE,Alu
chr2	132275396	T	C	0.00348	LOC150776	+	FALSE
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10517550	T	C	0.00457		.	FALSE	AluSx1	SINE,Alu
chr1	26755494	A	G	0.00874	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	16889820	C	T	0.00709	NBPF1	-	FALSE
chr3	195963500	C	T	0.00014		.	FALSE
chr1	144931330	C	T	0.00194	NBPF20,PDE4DIP	+,-	FALSE
chr3	17202334	A	C	0.00770	TBC1D5	-	FALSE
chr2	69689806	T	C	0.00175	AAK1	-	TRUE	AluSg	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr3	197611095	A	G	0.00694		.	FALSE	AluSx1	SINE,Alu
chr1	33066859	A	G	0.00403	ZBTB8A	+	TRUE	AluSq4	SINE,Alu
chr19	23542193	T	C	0.00099	ZNF91	-	TRUE	AluY	SINE,Alu
chr3	56655865	A	G	0.00970	FAM208A	-	FALSE	(A)n	SINE,Alu
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr5	137354051	C	T	0.00098	FAM13B	-	FALSE
chr12	120898998	A	G	0.00081	GATC	+	TRUE	AluJr	SINE,Alu
chr3	66024384	G	C	0.00096	MAGI1	-	FALSE
chr2	233446266	C	T	0.00177	EIF4E2	+	FALSE
chr7	100031498	T	C	0.00110	MEPCE	+	FALSE
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr1	36067838	T	C	0.00081	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	15780233	C	T	1.83528E-06	ANKRD28	-	FALSE	MER11B	SINE,Alu
chr12	52710715	G	A	0.00729	KRT83	-	FALSE
chr7	17384882	A	G	8.88136E-05	AHR	+	TRUE	AluSc	SINE,Alu
chr1	93803522	T	C	0.00163	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr1	16932495	A	C	0.00199	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr2	20818517	T	C	0.00748	HS1BP3	-	FALSE
chr1	144821888	C	G	0.00093	NBPF20,NBPF9	+	FALSE
chr3	98518156	T	A	7.17121E-05	DCBLD2	-	FALSE
chr5	49692280	T	C	9.73531E-05	EMB	-	FALSE	L2c	SINE,Alu
chr1	120695202	C	A	0.00033		.	FALSE
chr1	206516261	C	T	0.00228	SRGAP2	+	FALSE
chr2	135208354	A	T	0.00249	MGAT5	+	FALSE
chr1	33148635	A	G	5.17667E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr4	17804872	T	C	0.00096	DCAF16	-	TRUE	AluSx	SINE,Alu
chr4	3770069	G	C	0.00018	ADRA2C	+	FALSE
chr1	167759573	T	C	0.00895	MPZL1	+	FALSE
chr1	19586455	A	G	0.00245	MRTO4	+	TRUE	AluSz	SINE,Alu
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr6	17557412	C	T	0.00986	CAP2	+	FALSE
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr3	15113733	T	C	0.00228	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	92865902	A	G	0.00040		.	FALSE	AluJr	SINE,Alu
chr3	148748339	G	T	0.00666	HLTF	-	FALSE
chr2	206983093	T	C	0.00118		.	FALSE	AluJb	SINE,Alu
chr1	1594315	C	T	0.00347	CDK11B,SLC35E2B	-	FALSE
chr1	89447720	G	A	0.00521	KYAT3,RBMXL1	-	FALSE
chr1	201438097	G	C	2.75480E-05	PHLDA3	-	FALSE
chr1	27992825	G	A	0.00192	IFI6	-	FALSE

RBP	HMGB2
Knock-Method	CRISPRi
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR263IOO
Platform	HiSeq
Pubmed ID	32252787

HMGB2 - Target Gene Network