Dataset Overview
RBPNOL12
Knock-MethodshRNA
RBP FamilyNop25
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR227AVS
PlatformHiSeq
Pubmed ID32252787

NOL12 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of NOL12
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of NOL12


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr12124146067AG1.77884E-06GTF2H3+TRUEAluSx4SINE,Alu
chr6109001947AG0.00359FOXO3+FALSE(A)nSINE,Alu
chr116892274AT0.00119NBPF1-FALSE
chr3100084203CG0.00484TOMM70-FALSE
chr11419130AG0.00685ATAD3B+FALSEAluSzSINE,Alu
chr9115447533TC0.00326INIP-TRUEAluJbSINE,Alu
chr1145512078AG0.00907NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1201355943CT0.00355LAD1-FALSE
chr194352570GT0.00097GCLM-FALSEAluSx1SINE,Alu
chr349053219AG1.70535E-05WDR6,DALRD3+,-FALSE
chr128661576AG0.00625MED18+TRUEAluSgSINE,Alu
chr1810752666CT1.68498E-05PIEZO2-FALSE
chr274442548CT0.00721.FALSE
chr182544702GA0.00522METTL4-FALSE
chr1142619386GA0.00637.FALSE
chr2176792535TG0.00211LNPK-FALSE
chr1109192051TC0.00124HENMT1-TRUEAluJrSINE,Alu
chr123519504TA3.21384E-05HTR1D-FALSE
chr1164820482TA0.00045PBX1+FALSE
chr1168218735AG0.00924.FALSEAluSzSINE,Alu
chr132631809CT2.91083E-08KPNA6+FALSE
chr128567501AG0.00887.FALSE
chr1244182706AG0.00788IRAK4+FALSEMSTB-intSINE,Alu
chr5175811094CT0.00700NOP16-FALSE
chr237429737AG0.00439CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr1674698531TC0.00702RFWD3-TRUEAluSx3SINE,Alu
chr237331560TC6.28398E-05.FALSEAluJbSINE,Alu
chr348485381TC0.00103TMA7+FALSE
chr1591044377TC0.00440IQGAP1+FALSE
chr128661692AG2.56757E-06MED18+TRUEAluSgSINE,Alu
chr12133298937AG0.00240PGAM5+TRUEAluSgSINE,Alu
chr3195963400TG0.00155.FALSE
chr1184762524TC0.00471FAM129A-TRUEAluSzSINE,Alu
chr2191829133GA0.00097GLS+FALSE
chr344791553TC1.10852E-07KIAA1143-TRUEAluJrSINE,Alu
chr239009427AG1.04745E-05.FALSEAluSx3SINE,Alu
chr1145512925AG0.00238NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr110519912TC5.10285E-06.FALSEAluJrSINE,Alu
chr133149496AG0.00308SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr7156763332AG0.00090NOM1+TRUEAluSxSINE,Alu
chr10120920588TC0.00304SFXN4-FALSE
chr1109746819AG0.00390KIAA1324+TRUEAluJbSINE,Alu
chr144818529TC0.00310ERI3-FALSE
chr1154323598TA0.00198ATP8B2+FALSE(TA)nSINE,Alu
chr120826786TA0.00030MUL1-FALSE
chr110517290TC0.00437.FALSEAluJrSINE,Alu
chr4763539GC0.00816PCGF3+FALSE
chr1118166877CT0.00980FAM46C+FALSE
chr1143186597GA0.00644LOC102723769-FALSE
chr11595034TC2.36116E-07CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr120978304TA0.00018PINK1-AS,DDOST-FALSEAluYSINE,Alu
chr5174956487TC0.00457SFXN1+FALSE
chr111298093CT1.54321E-14MTOR-FALSE
chr4155457601TC0.00423PLRG1-FALSE
chr1610625108TC7.88488E-10EMP2-TRUEAluSx3SINE,Alu
chr153291344AG0.00088ZYG11B+FALSE(A)nSINE,Alu
chr775677504CT0.00768MDH2+FALSE
chr11595500TC0.00845CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr119543456TC0.00011LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr489181478TC0.00656PPM1K-TRUEAluSx1SINE,Alu
chr12133635613TC0.00805.FALSE
chr121780000GT0.00153NBPF3+FALSEERVL-E-intSINE,Alu
chr19161011TC0.00190.FALSEAluJbSINE,Alu
chr1160967854TC0.00150F11R-TRUEAluSpSINE,Alu
chr299812447AG0.00501MRPL30+TRUEAluSxSINE,Alu
chr348787219AG0.00024PRKAR2A-FALSE
chr191990445AG5.21972E-05CDC7+FALSELFSINE_VertSINE,Alu
chr3179117241TC0.00133GNB4-TRUEAluSzSINE,Alu
chr111710798TG0.00328FBXO2-FALSE(CCT)nSINE,Alu
chr152520866CT0.00108TXNDC12-FALSE
chr5125961532AG0.00039PHAX+TRUEAluSz6SINE,Alu
chr1533064465CG0.00735FMN1-FALSE
chr110517635TC0.00523.FALSEAluSx1SINE,Alu
chr540852810GT0.00276CARD6+FALSE
chr119542415TC0.00204LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1117645998AG0.00057.FALSE
chr1114940211GT8.00129E-05TRIM33-FALSE(T)nSINE,Alu
chr11255402CG0.00333CPSF3L-FALSE(GCAGG)nSINE,Alu
chr985861561CT0.00287FRMD3-FALSE(TC)nSINE,Alu
chr146032311AG0.00043AKR1A1+FALSE
chr5109204057TA0.00614MAN2A1+FALSE
chr1149582019AG0.00082LINC00623,LINC00869,LOC103091866+FALSE
chr76048973CA8.39369E-05AIMP2+FALSE
chr1477581481CA0.00997CIPC+FALSE
chr1453242354TC3.85910E-06GNPNAT1-TRUEAluJoSINE,Alu
chr2206986314TC0.00936.FALSEAluSzSINE,Alu
chr2206981796TC0.00137.FALSEAluJbSINE,Alu
chr165897981GA0.00025LEPR,LEPROT+FALSE
chr453732381CT0.00433RASL11B+FALSE(TTTCTTT)nSINE,Alu
chr1954956254AC0.00417LENG8-AS1-FALSEMLT2B3SINE,Alu
chr34403260CT0.00603SUMF1-FALSE
chr152817504TC0.00934CC2D1B-TRUEAluSg4SINE,Alu
chr538478065TA0.00049LIFR-FALSE
chr120976589CT0.00125PINK1,PINK1-AS+,-FALSE
chr3100083427TA0.00456TOMM70-FALSEFAMSINE,Alu
chr144447004GA0.00768B4GALT2+FALSE(CAG)nSINE,Alu
chr2102508655GT0.00817MAP4K4+FALSE
chr136068364TC0.00195PSMB2-TRUEAluScSINE,Alu
chr128261662AG0.01000SMPDL3B+FALSE
chr3197024681TC0.00018DLG1-FALSE
chr345960578GA0.00632FYCO1-FALSE
chr116919961CT0.00133NBPF1-FALSE
chr417629926CT0.00319.FALSEMER90SINE,Alu
chr145976269CG0.00039MMACHC+FALSE
chr101086804TA0.00821IDI2-AS1,IDI1+,-FALSE
chr980333361CT0.00382GNAQ-FALSE
chr744917320TC0.00082PURB-TRUEAluSzSINE,Alu
chr2113287200CT0.00087TTL+FALSE(T)nSINE,Alu
chr3119543179CA0.00992GSK3B-FALSE(CA)nSINE,Alu
chr1148010973CT0.00045NBPF8-FALSE
chr344791293AT0.00031KIAA1143-FALSEAluJrSINE,Alu
chr2206981856TC0.00174.FALSEAluJbSINE,Alu
chr1745761109TG0.00018.FALSE
chr1257450118TA0.00669NEMP1-FALSE
chr128661767AG0.00242MED18+TRUEAluSgSINE,Alu
chr191990445AG0.00784CDC7+FALSELFSINE_VertSINE,Alu
chr133148213AG0.00080SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr11169973GA0.00783B3GALT6+FALSE
chr1142690928CA0.00022.FALSE
chr657034841GT0.00581ZNF451,LOC101927211+,-FALSE
chr315113681TC0.00048RBSN-TRUEAluSz6SINE,Alu
chr1719091395CT0.00852.FALSEU3SINE,Alu
chr127205359TC3.58613E-05.FALSEAluScSINE,Alu
chr72274209TC0.00578MRM2-FALSEAluJrSINE,Alu
chr136794250AG0.00324.FALSEAluJbSINE,Alu
chr111159823TC0.00186EXOSC10,LOC105376736+,-FALSE
chrX123043142AG0.00045XIAP+TRUEAluSzSINE,Alu
chr11419690AG0.00464ATAD3B+TRUEAluYk2SINE,Alu
chr1089623865AC0.00348PTEN+FALSE
chr116893686GC0.00296NBPF1-FALSE
chr116946437CT0.00257CROCCP2-FALSE
chr1165877575AC0.00839UCK2+FALSE
chr116945227GT0.00353CROCCP2-FALSE
chr12125512494AG0.00427.FALSEAluYSINE,Alu
chr730825575CA0.00101INMT-FAM188B,FAM188B+FALSE
chr268402360AG0.00309PNO1+FALSE
chr543575020TC8.37337E-06NNT-AS1-TRUEAluSq2SINE,Alu
chr393780109GC8.09346E-05DHFR2-FALSE
chr155619569CT0.00477USP24-FALSE
chr1619715543TC0.00879.FALSEAluSgSINE,Alu
chr133086876TC0.00672ZBTB8OS-TRUEAluYSINE,Alu
chr117199309GA0.00398LOC440570+FALSE
chr6150046484TC0.00953NUP43-TRUEAluSq2SINE,Alu
chr146075191CA0.00457NASP+FALSEA-richSINE,Alu
chr2217366674AG0.00889.FALSEAluSzSINE,Alu
chr237327651TC0.00395.FALSE
chr631656514CT0.00325.FALSE
chr132801745AG0.00357MARCKSL1-FALSE
chr116932144AC1.90883E-05NBPF1-FALSE
chr439550085TC3.55103E-05UGDH-AS1,SMIM14+,-FALSEFLAM_CSINE,Alu
chr729962666TA0.00077SCRN1-FALSE
chr136067784TC1.68158E-09PSMB2-TRUEAluSzSINE,Alu
chr189447720GA0.00030KYAT3,RBMXL1-FALSE
chr129644328CT0.00014PTPRU+FALSE
chr12133334739TC0.00388ANKLE2-TRUEAluSzSINE,Alu
chr1179041705AT0.00068FAM20B+FALSE
chr16283305TC0.00496ICMT-TRUEAluSx3SINE,Alu
chr3170021210CA0.00015PRKCI+FALSE
chr1145694022AG0.00708NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr163881552CT0.00293ALG6+FALSE
chr1753239140CT0.00954STXBP4+FALSEMIRSINE,Alu
chr2239127060AG0.00647GTPBP1+FALSE
chr4186081538TA0.00077CFAP97-FALSE
chr1204096630TC0.00471SOX13+FALSE
chr452888499GA0.00366SGCB-FALSE
chr131192650TG0.00727MATN1,MATN1-AS1+,-FALSE
chr128826118AG0.00948PHACTR4+TRUEAluJbSINE,Alu
chr246524711CT0.00513EPAS1+FALSE
chr1490509582TC0.00017TDP1+FALSE
chr1114443606AG0.00014AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr153289688AG0.00059ZYG11B+TRUEAluSzSINE,Alu
chr919063167CT0.00539HAUS6-FALSE
chr13545194CG0.00254TPRG1L+FALSE
chr1197476807GC0.00287DENND1B-FALSE
chr537290323TC0.00029.FALSEAluSzSINE,Alu
chr229023117AT0.00805PPP1CB+FALSE
chr116889566TC0.00436NBPF1-TRUE
chr1155217438AT0.00610FAM189B-FALSE
chr1073994158AG0.00110ANAPC16+TRUEAluJrSINE,Alu
chr413601337GA7.28365E-09BOD1L1-FALSE
chr248025764CT0.00722MSH6+FALSE
chr16684049GA5.41898E-05PHF13+FALSE
chr124796069AC0.00403NIPAL3+FALSE
chr848890114AG2.61683E-11MCM4+TRUEAluJbSINE,Alu
chr116889413TC1.64789E-05NBPF1-TRUEL1MC4SINE,Alu
chr136068369TC0.00252PSMB2-TRUEAluScSINE,Alu
chr16283264TC0.00287ICMT-TRUEAluSx3SINE,Alu
chr353220215GA2.78975E-05PRKCD+FALSE
chr237328034TC0.00380.FALSE
chr2206987636TC0.00093.FALSEAluJbSINE,Alu
chr811700737TC0.00126CTSB-TRUEAluSgSINE,Alu
chr110520505TC0.00011.FALSEAluSx1SINE,Alu
chr122854931CA0.00238ZBTB40+FALSEA-richSINE,Alu
chrX54587290AG0.00504GNL3L+TRUEAluSq2SINE,Alu
chr3196079691TC0.00507.FALSEAluScSINE,Alu
chr286249840TC0.00482LOC90784-TRUEAluJrSINE,Alu
chr348485452TA0.00363TMA7+FALSE
chr16282371TC0.00054ICMT-TRUEAluSzSINE,Alu
chr119542269TC0.00744LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr19788153GA0.00198PIK3CD+FALSEAluSxSINE,Alu
chr7100031497TG0.00119MEPCE+FALSE
chr1610625058TC2.66942E-12EMP2-TRUEAluSx3SINE,Alu
chr892075904TC0.00242OTUD6B-AS1-FALSELTR67BSINE,Alu
chr1145689537AG0.00341NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1110136321TA0.00721GNAI3+FALSE
chr1115248084CT0.00171NRAS-FALSE
chr1180063334GA2.71425E-05CEP350+FALSE
chr1201846627AT0.00571IPO9+FALSE(CA)nSINE,Alu
chr120826781CT0.00110MUL1-FALSE
chr1207942427AG0.00822CD46+TRUEAluSg4SINE,Alu
chr5179157298TG0.00816CANX+FALSE
chr4184238324GA0.00870WWC2+FALSE
chr577655378TC0.00555SCAMP1-AS1-TRUEAluSx4SINE,Alu
chr2110373919GA0.00669SOWAHC+FALSE
chr796318078AT0.00790.FALSE
chr1145329095CG0.00261NBPF20,NBPF10+FALSE
chr128825760AG0.00802PHACTR4+TRUEAluSpSINE,Alu
chr116889423GC0.00459NBPF1-FALSEL1MC4SINE,Alu
chr1179042300CA0.00491FAM20B+FALSE
chr1075009591TC8.39163E-08DNAJC9-AS1,MRPS16+,-FALSEAluScSINE,Alu
chr1144604425CT0.00299NBPF20+FALSE
chr247562582GA0.00484LOC101927043-FALSEBC200SINE,Alu
chr1990773CT0.00705AGRN+FALSE
chr989627066AG0.00588LOC440173-FALSE
chr116946336GA0.00409CROCCP2-FALSE
chr1160967890TC0.00871F11R-TRUEAluSpSINE,Alu
chr1179042905AG0.00034FAM20B+TRUE
chr9131872852GC0.00064CRAT-FALSE
chr133148196AG0.00054SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr2112252626AC0.00048MIR4435-2HG-FALSE
chr194930345GA1.57139E-05ABCD3+FALSE
chr128825466AG0.00701PHACTR4+TRUEAluSgSINE,Alu
chr1242719890AG0.00730ZCRB1-FALSE
chr18021778TC0.00495PARK7+FALSE
chr17416890CT0.00231VPS53-FALSE
chr3108298260CT0.00042KIAA1524-FALSE
chr247398328GA0.00434CALM2-FALSE
chr345721989AG0.00713LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chr77283569GA0.00032C1GALT1+FALSE(AT)nSINE,Alu
chr167874849TC7.36358E-05SERBP1-TRUEAluSxSINE,Alu
chr119542410TC0.00270LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr136642328CT0.00971MAP7D1+FALSEGA-richSINE,Alu
chr1117644949CG0.00862TTF2+FALSE
chr116909129TC0.00131NBPF1-FALSE
chr417804872TC0.00096DCAF16-TRUEAluSxSINE,Alu
chr3195963500CT0.00014.FALSE
chr579923360TC0.00727DHFR-TRUEAluJrSINE,Alu
chr2218696215AG0.00915TNS1-FALSE
chr110517352TC0.00311.FALSEAluJrSINE,Alu
chr1171943768GT1.87744E-06INPPL1+FALSE
chr1463841402AC0.00692PPP2R5E-FALSE
chr11593023GC2.84325E-05CDK11B,SLC35E2B-FALSE
chr1110049203GC0.00209.FALSE
chr568858545CG0.00034GTF2H2C,GTF2H2C_2+FALSEAluSzSINE,Alu
chr132742441GA2.50972E-10LCK+FALSE
chr1591044380GC0.00453IQGAP1+FALSE
chr1155144757TC0.00758KRTCAP2-FALSETigger19bSINE,Alu
chr145975628AG0.00465MMACHC+TRUEAluSx4SINE,Alu
chr237330540TC0.00854.FALSEAluSq2SINE,Alu
chr581571669CT0.00143RPS23-FALSE
chr1162497663GA0.00335UHMK1+FALSE
chr310192608AG0.00030VHL+TRUEAluSx1SINE,Alu
chr286252080TC0.00017POLR1A-TRUEAluSq2SINE,Alu
chr3179117128TC0.00239GNB4-TRUEAluSzSINE,Alu
chr1194801633AT0.00808SRSF8+FALSE
chr1145689566AG0.00331NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr3115528809TG0.00087LSAMP-FALSE
chr2153512503CT0.00082PRPF40A-FALSE
chr1157044418GC0.00707.FALSE
chr133240842CT0.00446YARS-FALSE
chr1100489992AG0.00297SLC35A3+TRUEAluSgSINE,Alu
chr349067308GA0.00278QRICH1-FALSE
chr147844403CA0.00511CMPK1+FALSE
chr128662199AG7.40709E-05MED18+TRUEAluSq2SINE,Alu
chr3107526033TA0.00056BBX+FALSE
chr1145512078AG0.00615NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1213071445GA0.00233FLVCR1+FALSEMIR3SINE,Alu
chr1118066459AG0.00788MAN1A2+FALSE
chr133149363AG0.00368SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr227293351CT0.00314AGBL5,OST4+,-FALSE
chr132638906CT4.63739E-10KPNA6+FALSE
chr153291434AG0.00108ZYG11B+TRUEAluJrSINE,Alu
chr16283306TC0.00047ICMT-TRUEAluSx3SINE,Alu
chr1563111739TC0.00914TLN2+FALSE
chr812286573GA0.00052FAM86B2-FALSE
chr2198572082TC0.00093MARS2+FALSE
chr2114352179GA1.68965E-05WASH2P+FALSE
chr2178084651AG1.09207E-09HNRNPA3+FALSE
chr2236677549CT0.00040MYH9-FALSE

Differential Expression Gene Analysis