Dataset Overview
RBP
G3BP1
Knock-Method
shRNA
RBP Family
NTF2
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR074UZM
Platform
HiSeq
Pubmed ID
32252787
G3BP1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of G3BP1
Show
10
25
50
100
entries
Search:
Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
40.38
33.09
-0.63166
1.48463E-13
7.63864E-13
A1CF
29.02
17.87
-0.84724
2.39643E-27
2.93704E-26
A2M
2827.98
2680.66
-0.37589
7.81385E-07
2.13934E-06
AACS
17.52
15.5
-0.51110
6.95082E-11
2.86038E-10
AADAT
2.45
4.64
0.40274
0.00807
0.01301
AAGAB
4.83
10.43
0.85233
3.97849E-12
1.82271E-11
AAK1
1.2
2.95
1.50334
3.02188E-24
3.12987E-23
AAMDC
27.35
21.55
-0.60414
1.71095E-06
4.49050E-06
AAMP
124.44
133.81
-0.17679
0.01905
0.02896
AAR2
22.2
23.76
-0.24228
0.00246
0.00432
Showing 1 to 10 of 9,607 entries
Previous
1
2
3
4
5
…
961
Next
Function Analysis of Target Genes of G3BP1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101556531_101556610_101554169_101554225_101556853_101557853
0.00210
0.102
DataSet_01_237
View details
ABCC6
16256849_16257032_16255294_16255421_16259479_16259635
0.00376
0.432
DataSet_01_237
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00066
0.167
DataSet_01_237
View details
AC022816.2
14280600_14280738_14277455_14277545_14285334_14285418
0.00363
-0.331
DataSet_01_237
View details
ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00030
0.124
DataSet_01_237
View details
ACSL4
108887273_108887415_108872578_108872808_108902582_108902740
0.00268
-0.535
DataSet_01_237
View details
ADD1
2928365_2928402_2927740_2927839_2929897_2931054
0.00264
0.053
DataSet_01_237
View details
ADD1
2928368_2928402_2927740_2927839_2929897_2931789
0.00278
0.058
DataSet_01_237
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00040
0.007
DataSet_01_237
View details
AFP
74320952_74321007_74319549_74319614_74321347_74321891
0.00336
0.005
DataSet_01_237
View details
Showing 1 to 10 of 212 entries
Previous
1
2
3
4
5
…
22
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00688
-0.037
DataSet_01_237
View details
AFP
74309063_74309161_74313178_74313393_74303890_74304023
0.00010
-0.011
DataSet_01_237
View details
AFP
74309063_74309161_74313178_74313393_74308012_74308145
0.00187
-0.075
DataSet_01_237
View details
AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00001
-0.011
DataSet_01_237
View details
AHSG
186336285_186336426_186337645_186337729_186334975_186335139
0.00005
-0.008
DataSet_01_237
View details
AHSG
186336300_186336426_186337645_186337729_186334975_186335139
0.00050
-0.006
DataSet_01_237
View details
AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00070
-0.006
DataSet_01_237
View details
AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00762
-0.005
DataSet_01_237
View details
ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00001
0.088
DataSet_01_237
View details
ALB
74274310_74274457_74275071_74275140_74272345_74272478
0.00813
-0.501
DataSet_01_237
View details
Showing 1 to 10 of 99 entries
Previous
1
2
3
4
5
…
10
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101576820_101576968_101576820_101576915_101577064_101577156
0.00486
-0.217
DataSet_01_237
View details
AKR1C2
5041391_5042858_5042741_5042858_5040816_5040939
0.00696
0.072
DataSet_01_237
View details
BCL2L2-PABPN1
23793346_23793537_23793346_23793498_23794455_23794578
0.00805
0.133
DataSet_01_237
View details
C11orf54
93474834_93475056_93474834_93474894_93480462_93480614
0.00639
0.17
DataSet_01_237
View details
EIF4G2
10823207_10823756_10823595_10823756_10822508_10822634
0.00007
0.099
DataSet_01_237
View details
ENO2
7025834_7026074_7025834_7025893_7026201_7026423
0.00001
-0.087
DataSet_01_237
View details
HNF4A
43056974_43057127_43056974_43057097_43058162_43058311
0.00011
-0.146
DataSet_01_237
View details
KIAA1109
123255498_123255700_123255498_123255595_123257346_123257508
0.00172
-0.128
DataSet_01_237
View details
METAP1D
172928447_172928674_172928447_172928588_172930331_172930480
0.00950
0.43
DataSet_01_237
View details
PHC2
33799690_33799893_33799785_33799893_33797875_33798005
0.00035
-0.19
DataSet_01_237
View details
Showing 1 to 10 of 22 entries
Previous
1
2
3
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTG1
79478928_79479168_79478928_79479141_79479257_79479386
0.00642
0.013
DataSet_01_237
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00000
0.013
DataSet_01_237
View details
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00001
0.025
DataSet_01_237
View details
APOA2
161192707_161192820_161192707_161192784_161193139_161193215
0.00999
0.048
DataSet_01_237
View details
ATP6V1G2-DDX39B
31508258_31508343_31508258_31508311_31509726_31509925
0.00000
-0.243
DataSet_01_237
View details
CCNL2
1326145_1328183_1326145_1326245_1328775_1328840
0.00235
0.03
DataSet_01_237
View details
CREB3L3
4156991_4157292_4156994_4157292_4154895_4155024
0.00131
0.378
DataSet_01_237
View details
DDX5
62496792_62497000_62496792_62496891_62498127_62498187
0.00022
0.077
DataSet_01_237
View details
FN1
216236831_216237047_216236831_216237023_216238044_216238134
0.00330
-0.081
DataSet_01_237
View details
FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00300
0.011
DataSet_01_237
View details
Showing 1 to 10 of 25 entries
Previous
1
2
3
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AHSA2
61412636_61413632_61412636_61412753_61413580_61413632
0.00373
0.124
DataSet_01_237
View details
ARHGEF40
21555159_21555622_21555159_21555264_21555478_21555622
0.00372
0.227
DataSet_01_237
View details
BCKDHA
41916541_41916914_41916541_41916721_41916827_41916914
0.00938
-0.027
DataSet_01_237
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16342841_16343017
0.00003
0.038
DataSet_01_237
View details
C17orf76-AS1
16342640_16343567_16342640_16342728_16343498_16343567
0.00226
0.017
DataSet_01_237
View details
C1orf63
25570040_25571792_25570040_25570124_25571640_25571792
0.00225
0.258
DataSet_01_237
View details
CAPN2
223957542_223958227_223957542_223957611_223958148_223958227
0.00563
0.248
DataSet_01_237
View details
CPSF7
61183137_61183991_61183137_61183256_61183576_61183991
0.00077
0.082
DataSet_01_237
View details
CYBA
88713162_88713583_88713162_88713246_88713508_88713583
0.00919
0.013
DataSet_01_237
View details
DCXR
79994734_79995423_79994734_79994889_79995325_79995423
0.00541
0.16
DataSet_01_237
View details
Showing 1 to 10 of 42 entries
Previous
1
2
3
4
5
Next
Differential Variants in RNA (DVRs)
Show
10
25
50
100
entries
Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
17320251
G
A
0.00367
ATP13A2
-
FALSE
chr1
78414285
T
A
0.00179
FUBP1
-
FALSE
chr1
154554940
G
C
0.00032
ADAR
-
FALSE
chr1
16912099
G
C
0.00450
NBPF1
-
FALSE
chr1
95363041
C
T
0.00105
CNN3
-
FALSE
chr1
10521254
T
C
0.00640
DFFA
-
TRUE
AluY
SINE,Alu
chr1
6283264
T
C
0.00561
ICMT
-
TRUE
AluSx3
SINE,Alu
chr1
19586437
A
G
0.00056
MRTO4
+
TRUE
AluSz
SINE,Alu
chr1
6282237
T
C
0.00455
ICMT
-
TRUE
AluSz
SINE,Alu
chr1
20978457
T
C
0.00036
PINK1-AS,DDOST
-
TRUE
AluY
SINE,Alu
Showing 1 to 10 of 295 entries
Previous
1
2
3
4
5
…
30
Next
Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression