RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	201774775	T	C	0.00872		.	FALSE	AluJr4	SINE,Alu
chr1	12628188	T	C	6.05765E-06	DHRS3	-	FALSE
chr1	19585545	G	A	0.00696	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr1	16895634	T	G	0.00472	NBPF1	-	FALSE
chr2	55516902	G	A	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr4	17633798	A	G	0.00053	FAM184B	-	FALSE	AluSz	SINE,Alu
chr1	28836974	A	G	9.88453E-07	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr17	43364288	A	G	0.00345	MAP3K14	-	FALSE
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr1	9160963	T	C	0.00098		.	FALSE	AluJb	SINE,Alu
chr1	20976023	T	C	1.28334E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr1	144595935	G	A	0.00860	NBPF20	+	FALSE	AluJb	SINE,Alu
chr6	36894341	G	A	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	45280500	A	G	0.00857		.	FALSE	AluSx	SINE,Alu
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr1	160967899	T	C	0.00661	F11R	-	TRUE	AluSp	SINE,Alu
chr4	52888499	G	A	0.00366	SGCB	-	FALSE
chr1	9642828	T	A	0.00148	SLC25A33	+	FALSE
chr4	53463566	C	T	5.12751E-05	USP46	-	FALSE
chr1	94352553	C	T	0.00136	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr10	75632760	C	T	0.00013	CAMK2G	-	FALSE
chr5	35064460	G	C	0.00920	PRLR	-	FALSE
chr1	1252349	A	G	0.00798	CPSF3L	-	FALSE	AluJr	SINE,Alu
chr1	900720	A	T	0.00711	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	9165685	G	A	7.66901E-05	GPR157	-	FALSE
chr11	65179819	T	C	0.00038	FRMD8	+	FALSE
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr7	91630345	G	A	0.00473	AKAP9	+	FALSE
chr1	150771703	T	C	0.00500	CTSK	-	FALSE
chr4	124237124	A	G	0.00119	SPATA5	+	TRUE	AluJr	SINE,Alu
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr2	68402794	T	G	0.00630	PNO1	+	FALSE
chr5	177576460	C	T	0.00635		.	FALSE
chr14	75202722	A	G	0.00022	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	3371368	C	G	0.00689	ARHGEF16	+	FALSE
chr2	103333654	A	T	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	179326925	C	T	0.00284	SOAT1	+	FALSE	AluJo	SINE,Alu
chr3	172115590	A	G	0.00355	FNDC3B	+	FALSE
chr7	115898442	G	C	2.36867E-05	TES	+	FALSE	AluSx	SINE,Alu
chr2	37330476	T	C	2.74271E-05		.	FALSE	AluSq2	SINE,Alu
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr1	45244432	T	A	0.00154		.	FALSE
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr6	3022544	T	C	7.02821E-06	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu
chr16	87440117	C	T	1.93168E-06	ZCCHC14	-	FALSE
chr1	10520331	C	T	0.00527		.	FALSE	AluSx1	SINE,Alu
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr11	6703162	A	T	0.00726	MRPL17	-	FALSE
chr3	128339057	A	T	0.00535	RPN1	-	FALSE	(A)n	SINE,Alu
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr2	26477130	T	C	0.00501	HADHB	+	FALSE
chr3	182614493	T	C	0.00036	ATP11B	+	FALSE
chr1	148556087	G	C	0.00486		.	FALSE
chr1	114940246	C	A	0.00628	TRIM33	-	FALSE
chr1	21795388	A	G	0.00732	NBPF3	+	FALSE
chr8	30536152	T	C	0.00015	GSR	-	TRUE	AluJr	SINE,Alu
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	201845903	A	G	0.00041	IPO9	+	FALSE
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr14	53242425	T	C	0.00473	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr10	13320111	G	T	0.00571	PHYH	-	FALSE
chr7	128294489	G	T	0.00354	LINC01000	+	FALSE
chr15	49454018	C	T	0.00053	GALK2	+	FALSE	AluSx1	SINE,Alu
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	160966434	T	C	0.00175	F11R	-	TRUE	AluSg	SINE,Alu
chr2	37431521	A	G	0.00783	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr2	99812429	A	G	0.00504	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	9160900	T	C	0.00628		.	FALSE	AluJb	SINE,Alu
chr1	63924020	C	T	0.00139	ITGB3BP	-	FALSE
chr1	36067760	T	C	0.00052	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	118175182	T	C	0.00205	DTWD2	-	TRUE	AluJr	SINE,Alu
chr1	206566948	G	A	0.00568	SRGAP2	+	FALSE
chr13	100638107	A	T	0.00841	ZIC2	+	FALSE
chr1	32508397	T	C	0.00166	KHDRBS1	+	FALSE
chr7	91742141	T	C	0.00100	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr21	34728113	A	G	0.00531	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	53288894	A	G	8.27269E-06	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr3	14986080	T	C	4.44089E-16	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	14150032	C	T	0.00163	PRDM2	+	FALSE
chr1	10518921	C	T	0.00398		.	FALSE	AluSx3	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr8	56985608	A	T	0.00077	RPS20	-	FALSE
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr3	45722287	A	G	0.00197	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr2	118854088	C	T	0.00543	INSIG2	+	FALSE
chr7	5410425	G	C	0.00043	TNRC18	-	FALSE	(CACCGC)n	SINE,Alu
chr5	141690819	G	A	0.00062	SPRY4	-	FALSE
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr17	42880118	T	C	0.00140	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	212515613	C	T	0.00286	PPP2R5A	+	FALSE
chr2	61705067	A	T	0.00084		.	FALSE
chr3	40503557	T	C	0.00746	RPL14	+	FALSE
chr19	58356524	A	G	0.00026	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr1	114443474	A	G	9.14620E-06	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr8	11701458	T	C	1.82355E-06	CTSB	-	TRUE	AluSx1	SINE,Alu
chr2	216300795	C	G	0.00641		.	FALSE
chr1	171561859	A	T	0.00439	PRRC2C	+	FALSE
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr3	44791062	T	C	0.00035	KIAA1143	-	FALSE
chr1	93603196	G	A	0.00627	MTF2	+	FALSE
chr1	10517672	T	C	0.00070		.	FALSE	AluSx1	SINE,Alu
chr1	15905501	G	A	0.00359	AGMAT	-	FALSE
chr1	110466466	T	C	0.00377	CSF1	+	FALSE
chr6	41888827	C	G	0.00936	MED20	-	FALSE
chr1	145512951	A	G	0.00180	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr1	184661942	T	G	0.00343	EDEM3	-	FALSE
chr7	100031496	T	A	0.00119	MEPCE	+	FALSE
chr1	26226610	C	T	0.00955	STMN1	-	FALSE
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr12	101295434	A	G	0.00695	ANO4	+	FALSE
chr9	21863618	T	C	0.00148	MTAP	+	FALSE	AluY	SINE,Alu
chr1	931935	T	C	0.00913		.	FALSE
chr1	89447720	G	A	0.00521	KYAT3,RBMXL1	-	FALSE
chr1	86049362	C	A	0.00140	CYR61	+	FALSE
chr2	75883878	T	C	0.00838	MRPL19	+	FALSE	HAL1	SINE,Alu
chr1	28864731	A	G	0.00477	RCC1	+	FALSE
chr1	53716416	G	A	0.00967	LRP8	-	FALSE
chr9	131094270	A	G	0.00686	COQ4	+	TRUE	AluSx	SINE,Alu
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr3	122283294	G	C	0.00066	DTX3L,PARP9	+,-	FALSE
chr1	10517623	T	C	8.06723E-05		.	FALSE	AluSx1	SINE,Alu
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr3	10192704	A	G	0.00091	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	99812446	A	G	0.00461	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	73460310	G	C	0.00091	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr3	10192747	A	G	0.00893	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr4	2516790	G	T	0.00141	RNF4	+	FALSE
chr3	44692564	C	G	0.00182	ZNF35	+	FALSE
chr1	145512123	A	G	3.10159E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr17	41144250	G	T	0.00025	RUNDC1	+	FALSE
chr6	150047430	T	C	0.00568	NUP43	-	TRUE	AluSc	SINE,Alu
chr3	193854148	T	A	0.00106	HES1	+	FALSE
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr1	206566904	T	C	0.00322	SRGAP2	+	FALSE
chr1	144595886	G	A	0.00205	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	20826781	C	T	0.00110	MUL1	-	FALSE
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	16889413	T	C	8.21040E-06	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	156565056	C	T	0.00498	GPATCH4	-	FALSE
chr1	16944953	T	G	0.00158	CROCCP2	-	FALSE
chrX	123047295	A	G	9.23037E-05	XIAP	+	FALSE	AluSx	SINE,Alu
chr1	143186597	G	A	0.00644	LOC102723769	-	FALSE
chr1	46093161	C	T	0.00628	GPBP1L1	-	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	224621934	G	C	0.00245	WDR26	-	FALSE	(GGA)n	SINE,Alu
chr1	9331227	A	G	0.00181	H6PD	+	TRUE	AluSx	SINE,Alu
chr2	136542427	T	A	0.00075	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr3	185646406	A	T	0.00023	TRA2B	-	FALSE
chr1	20977907	A	G	3.34679E-05	PINK1,PINK1-AS	+,-	FALSE
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr1	16932931	C	A	0.00191	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr7	33060946	A	G	0.00542	NT5C3A	-	FALSE
chr8	145159713	G	C	0.00137	MAF1	+	FALSE
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr1	65898263	A	G	0.00767	LEPR,LEPROT	+	FALSE	MIRc	SINE,Alu
chr1	31405694	G	A	0.00986	PUM1	-	FALSE
chr1	16932783	G	C	0.00843	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	37330534	T	C	6.35640E-05		.	FALSE	AluSq2	SINE,Alu
chr12	52710721	G	C	0.00519	KRT83	-	FALSE
chr1	93308168	T	A	0.00314	FAM69A	-	FALSE
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr7	44918672	T	C	0.00150	PURB	-	TRUE	AluSg	SINE,Alu
chr1	205501469	A	G	0.00113	CDK18	+	FALSE
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr6	150045852	T	C	0.00204	NUP43	-	TRUE	AluSq	SINE,Alu
chr2	28636644	A	G	0.00918	FOSL2	+	FALSE
chr5	140482871	T	G	0.00650	PCDHB3	+	FALSE
chr1	120539742	G	A	0.00469	NOTCH2	-	FALSE
chr2	37330146	C	G	2.68632E-05		.	FALSE
chr9	9442082	T	G	0.00052	PTPRD	-	FALSE	7SLRNA	SINE,Alu
chr9	116022893	C	A	0.00060	SLC31A1	+	FALSE
chr11	94801632	C	A	0.00194	SRSF8	+	FALSE
chr19	45406538	C	G	0.00119	TOMM40	+	FALSE
chr1	114306369	A	T	0.00834	RSBN1	-	FALSE
chr1	94982784	T	A	0.00179	ABCD3	+	FALSE
chr2	10194192	T	C	0.00715	KLF11	+	FALSE
chr1	10517613	T	C	0.00499		.	FALSE	AluSx1	SINE,Alu
chr2	85132775	C	G	7.25564E-06	TMSB10	+	FALSE
chr1	120839682	A	G	0.00073	FAM72B	+	FALSE
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr17	57281060	A	G	0.00026	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	70718278	C	G	0.00663		.	FALSE
chr4	160280309	G	T	0.00770	RAPGEF2	+	FALSE	(T)n	SINE,Alu
chr1	55316322	A	G	0.00266	DHCR24	-	FALSE
chr4	88061645	T	A	0.00049	AFF1	+	FALSE	(TATAT)n	SINE,Alu
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr4	6675519	A	C	0.00064	LOC105374366	-	FALSE
chr1	148004525	C	T	0.00541	NBPF8	-	FALSE
chr1	40537924	G	A	0.00476	CAP1	+	FALSE	(A)n	SINE,Alu
chr2	24225006	A	G	0.00141		.	FALSE	AluSx	SINE,Alu
chr1	33148361	G	C	0.00428	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr5	125961447	A	G	0.00242	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	153617980	A	G	0.00272	CHTOP	+	FALSE
chr12	56215097	A	T	0.00051	DNAJC14	-	FALSE
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr4	57326291	A	G	0.00424	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	61405795	G	T	0.00061	AHSA2	+	FALSE
chr1	6582558	T	C	0.00030	NOL9	-	TRUE	AluSx1	SINE,Alu
chr3	195963395	A	G	0.00028		.	FALSE
chr1	26755643	A	G	0.00955	LIN28A	+	FALSE	AluSc	SINE,Alu
chr2	39009427	A	G	1.04745E-05		.	FALSE	AluSx3	SINE,Alu
chr6	24719384	A	C	0.00215	C6orf62	-	FALSE	(A)n	SINE,Alu
chr4	17802890	T	C	0.00303	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	28662157	A	G	0.00159	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	145689533	A	G	0.00618	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr1	16892135	G	A	0.00221	NBPF1	-	FALSE
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chr1	35650022	C	A	0.00762	SFPQ	-	FALSE
chr1	45279900	T	C	0.00073		.	FALSE	(TCTT)n	SINE,Alu
chr1	145441838	C	G	0.00790	NBPF20,NBPF10,TXNIP	+	FALSE
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr1	220231946	T	C	0.00439	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr1	207247477	T	C	2.68116E-05	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr2	206986949	T	C	0.00693		.	FALSE	AluJr	SINE,Alu
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr3	52084040	C	T	4.81509E-06	DUSP7	-	FALSE
chr4	17804785	T	C	0.00083	DCAF16	-	TRUE	AluSx	SINE,Alu
chr3	122293773	A	T	0.00852	DTX3L	+	FALSE
chr1	2335348	C	T	0.00018	RER1	+	FALSE
chrX	3526615	G	T	0.00820	PRKX	-	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr1	16574382	A	C	0.00704	FBXO42	-	FALSE
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr2	219146868	T	C	0.00764	PNKD,TMBIM1	+,-	FALSE
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	12628188	T	C	3.43513E-08	DHRS3	-	FALSE

RBP	SAFB2
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR770LYW
Platform	HiSeq
Pubmed ID	32252787

SAFB2 - Target Gene Network