Dataset Overview
RBP
ACO1
Knock-Method
shRNA
RBP Family
Aconitase
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR511SYK
Platform
HiSeq
Pubmed ID
32252787
ACO1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of ACO1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
6.19
-0.84271
1.01011E-11
3.33751E-11
A1CF
32.44
11.45
-1.35733
2.97051E-134
1.94431E-132
A2M
2405.22
1582.72
-0.45243
3.05529E-22
1.77318E-21
A4GALT
0.67
1.4
0.74054
0.00296
0.00475
AACS
11.23
16.74
0.40806
1.43305E-11
4.68194E-11
AAGAB
8.11
18.79
0.99685
2.50853E-47
3.48081E-46
AAK1
3.76
8.78
1.18382
7.38445E-45
9.54572E-44
AAMDC
12.7
19.41
0.48363
0.00061
0.00107
AAMP
92.31
100.12
0.38515
9.53357E-12
3.15777E-11
AARSD1
12.23
17.61
0.45917
1.16819E-05
2.44269E-05
Showing 1 to 10 of 9,904 entries
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Function Analysis of Target Genes of ACO1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101601723_101601850_101595847_101596047_101603555_101603657
0.00113
-0.041
DataSet_01_240
View details
ABCC2
101579193_101579299_101578845_101579026_101590063_101590190
0.00959
-0.034
DataSet_01_240
View details
ABCG5
44051703_44051898_44051357_44051571_44052027_44052157
0.00410
0.158
DataSet_01_240
View details
ACOT9
23752448_23752484_23751288_23751334_23754035_23754133
0.00272
0.248
DataSet_01_240
View details
ACOT9
23752457_23752484_23751288_23751334_23754035_23754133
0.00428
0.272
DataSet_01_240
View details
ACP1
272036_272150_271865_271939_275139_275201
0.00417
-0.03
DataSet_01_240
View details
ADNP
49535197_49535318_49520425_49520538_49545187_49545353
0.00012
0.144
DataSet_01_240
View details
ADRM1
60883423_60883526_60883038_60883234_60883710_60883918
0.00293
0.029
DataSet_01_240
View details
ADRM1
60879516_60879633_60878623_60878837_60881252_60881376
0.00382
-0.058
DataSet_01_240
View details
AFMID
76202026_76202131_76198783_76198832_76202991_76203782
0.00954
-0.08
DataSet_01_240
View details
Showing 1 to 10 of 240 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI1
27044583_27044670_27048014_27048164_27040526_27040712
0.00330
-0.134
DataSet_01_240
View details
ABLIM1
116207638_116207779_116211382_116211430_116205070_116205162
0.00004
-0.183
DataSet_01_240
View details
ACLY
40049285_40049427_40054001_40054092_40048531_40048700
0.00000
0.208
DataSet_01_240
View details
ACP1
272036_272150_275139_275201_271865_271939
0.00000
-0.142
DataSet_01_240
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00007
-0.116
DataSet_01_240
View details
ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00000
0.038
DataSet_01_240
View details
AFP
74310709_74310839_74313178_74313393_74309063_74309161
0.00008
-0.238
DataSet_01_240
View details
AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00013
-0.011
DataSet_01_240
View details
AHSG
186336358_186336426_186337645_186337702_186334975_186335139
0.00023
-0.094
DataSet_01_240
View details
AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00121
-0.007
DataSet_01_240
View details
Showing 1 to 10 of 112 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD11
132323821_132324007_132323941_132324007_132322072_132322171
0.00930
0.5
DataSet_01_240
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ADD1
2906490_2906835_2906490_2906742_2909469_2909571
0.00010
0.086
DataSet_01_240
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AFP
74308012_74308145_74308012_74308036_74309082_74309161
0.00036
0.051
DataSet_01_240
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BRD2
32945902_32946165_32945902_32946091_32947604_32947909
0.00373
0.029
DataSet_01_240
View details
COL27A1
116984502_116984716_116984502_116984547_116993358_116993412
0.00024
0.581
DataSet_01_240
View details
DAZAP1
1422346_1422584_1422346_1422395_1425876_1425920
0.00006
0.052
DataSet_01_240
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DHPS
12790963_12791139_12790974_12791139_12790614_12790736
0.00634
0.126
DataSet_01_240
View details
DHPS
12790963_12791139_12791009_12791139_12790614_12790736
0.00774
0.468
DataSet_01_240
View details
EIF4G2
10823207_10823756_10823595_10823756_10822496_10822634
0.00001
0.144
DataSet_01_240
View details
FBXO9
52957531_52957642_52957531_52957622_52958263_52958359
0.00420
0.125
DataSet_01_240
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Showing 1 to 10 of 29 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC002116.8
36501468_36501685_36501468_36501585_36501795_36501947
0.00596
-0.147
DataSet_01_240
View details
ANKRD13A
110449795_110449942_110449809_110449942_110437327_110437589
0.00274
0.21
DataSet_01_240
View details
APOB
21265232_21265410_21265232_21265348_21266384_21266423
0.00059
-0.009
DataSet_01_240
View details
ASPSCR1
79970031_79970159_79970106_79970159_79969418_79969481
0.00278
-0.025
DataSet_01_240
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ATG9A
220075102_220075311_220075102_220075197_220075432_220075545
0.00680
-0.036
DataSet_01_240
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ATXN2L
28842282_28842393_28842305_28842393_28841935_28842111
0.00163
-0.106
DataSet_01_240
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BAZ2A
57004192_57004323_57004192_57004301_57005356_57005417
0.00812
0.056
DataSet_01_240
View details
C17orf76-AS1
16342841_16343017_16342973_16343017_16342640_16342728
0.00721
-0.088
DataSet_01_240
View details
C1orf109
38148990_38149113_38148990_38149109_38151944_38152124
0.00322
0.328
DataSet_01_240
View details
C1orf109
38148990_38149148_38148990_38149109_38151944_38152124
0.00464
0.295
DataSet_01_240
View details
Showing 1 to 10 of 43 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7125985_7126556_7125985_7126184_7126451_7126556
0.00018
0.179
DataSet_01_240
View details
AHSA2
61412636_61413632_61412636_61412753_61413580_61413632
0.00896
-0.134
DataSet_01_240
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ANO9
431847_432048_431847_431906_431998_432048
0.00958
0.487
DataSet_01_240
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AP1G2
24035024_24035369_24035024_24035101_24035272_24035369
0.00152
0.175
DataSet_01_240
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APEX1
20923736_20924260_20923736_20923862_20924072_20924260
0.00203
0.048
DataSet_01_240
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ARAP1
72407593_72408240_72407593_72407699_72408027_72408240
0.00257
0.082
DataSet_01_240
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BAX
49458804_49459090_49458804_49458856_49458943_49459090
0.00345
0.065
DataSet_01_240
View details
C17orf76-AS1
16342894_16343567_16342894_16343017_16343498_16343567
0.00049
0.055
DataSet_01_240
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16342841_16343017
0.00409
0.024
DataSet_01_240
View details
CFB
31915721_31916289_31915721_31915858_31916150_31916289
0.00786
-0.036
DataSet_01_240
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
15993714
T
A
0.00066
.
FALSE
chr1
94335335
G
T
0.00425
DNTTIP2
-
FALSE
chr1
10520258
T
C
0.00746
.
FALSE
AluSx
SINE,Alu
chr1
53288897
A
G
0.00160
ZYG11B
+
TRUE
AluJo
SINE,Alu
chr1
32661615
A
T
0.00033
TXLNA
+
FALSE
chr1
156044213
G
T
7.72130E-05
MEX3A
-
FALSE
(T)n
SINE,Alu
chr1
15904318
C
T
9.04121E-06
AGMAT
-
FALSE
chr1
109818270
C
T
0.00996
CELSR2
+
FALSE
chr1
10517635
T
C
7.30839E-07
.
FALSE
AluSx1
SINE,Alu
chr1
144598755
G
A
0.00743
NBPF20
+
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression