RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	69689806	T	C	0.00175	AAK1	-	TRUE	AluSg	SINE,Alu
chr2	30864980	A	G	7.96700E-05	LCLAT1	+	FALSE
chr5	150827303	T	G	0.00718	SLC36A1	+	FALSE
chr3	193334991	G	A	0.00473	OPA1	+	FALSE
chr1	89447854	G	T	0.00310	KYAT3,RBMXL1	-	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr1	160965379	T	C	0.00477	F11R	-	TRUE	AluSc	SINE,Alu
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr12	133297966	A	G	0.00000	PGAM5	+	FALSE	AluJo	SINE,Alu
chr11	72003767	C	A	0.00297	CLPB	-	FALSE
chr2	200813126	T	C	0.00713	TYW5	-	FALSE
chr7	75958147	T	A	0.00917	YWHAG	-	FALSE
chr3	127790249	A	G	0.00057	RUVBL1,SEC61A1	+,-	FALSE
chr1	67874697	T	C	0.00642	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr20	25428724	A	G	0.00033	GINS1	+	TRUE	AluJb	SINE,Alu
chr3	124732406	C	A	0.00975	HEG1	-	FALSE
chr7	129963777	T	G	0.00874	CPA4	+	FALSE	(TG)n	SINE,Alu
chr1	16945780	C	T	0.00034	CROCCP2	-	FALSE
chr1	10517550	T	C	0.00457		.	FALSE	AluSx1	SINE,Alu
chr1	9162247	T	C	0.00549		.	FALSE	AluSx	SINE,Alu
chr3	15114288	T	C	7.51597E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	9328120	A	G	0.00386	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	32697071	C	A	0.00134	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	67874849	T	C	0.00169	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	200827638	A	G	0.00665	CAMSAP2	+	FALSE
chr4	17802819	T	C	0.00409	DCAF16	-	TRUE	AluSz	SINE,Alu
chr7	55266417	T	C	0.00201	EGFR	+	FALSE
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr2	198416735	T	G	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr1	10520603	T	G	0.00838	DFFA	-	FALSE	AluSc8	SINE,Alu
chr15	65442647	T	C	2.02205E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr5	14510067	G	T	0.00130	TRIO	+	FALSE
chr2	198416734	A	T	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr5	134302899	A	G	0.00025		.	FALSE	AluSq2	SINE,Alu
chr5	148382005	C	A	8.42472E-06	SH3TC2	-	FALSE
chr19	39982631	A	G	0.00316	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	998582	G	C	0.00073		.	FALSE
chr5	40828062	A	G	0.00733	LOC100506548	-	FALSE
chr12	69237057	A	G	0.00259	MDM2	+	TRUE
chr1	11188109	C	A	0.00817	MTOR	-	FALSE
chr3	14986111	T	C	0.00999	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr7	16899197	C	T	0.00926	AGR3	-	FALSE
chr1	173834149	A	C	0.00265	GAS5	-	FALSE	AluSz	SINE,Alu
chr2	191184475	A	G	0.00895	HIBCH	-	FALSE
chr2	74442548	C	T	0.00035		.	FALSE
chr1	52306066	T	A	0.00154	NRDC	-	FALSE	(TCA)n	SINE,Alu
chrX	119572534	C	A	0.00387	LAMP2	-	FALSE
chr1	145512930	A	G	5.47366E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	32833539	T	C	1.95166E-05	BSDC1	-	TRUE
chr12	98942840	A	G	0.00031	TMPO	+	FALSE	AluSc	SINE,Alu
chr1	16958063	C	T	0.00246		.	FALSE
chr7	131241049	G	A	0.00145	PODXL	-	FALSE	(GGCGAC)n	SINE,Alu
chr1	6582761	T	C	0.00052	NOL9	-	FALSE	AluSg	SINE,Alu
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr1	1595538	T	C	0.00586	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr3	45748599	T	A	0.00470	SACM1L	+	FALSE
chr1	31905889	A	G	0.00483	SERINC2	+	FALSE
chr1	16892135	G	A	0.00221	NBPF1	-	FALSE
chr4	71682341	T	C	0.00584	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr1	205581853	C	T	0.00750	ELK4	-	FALSE
chr21	44331718	A	G	0.00410		.	FALSE	AluJb	SINE,Alu
chr7	43679092	G	C	1.19724E-06	COA1	-	FALSE
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	11159823	T	C	0.00186	EXOSC10,LOC105376736	+,-	FALSE
chr4	109551183	T	A	0.00270	RPL34	+	FALSE
chr20	25427801	A	G	0.00300	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	66430372	T	A	0.00300	LRIG1	-	FALSE
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr1	10520145	T	C	0.00424		.	FALSE	AluSx	SINE,Alu
chr1	145500933	C	T	0.00982	NBPF20,NBPF10,LIX1L	+	FALSE
chr5	74669972	C	T	0.00711	COL4A3BP	-	FALSE
chr17	43471481	G	A	0.00412		.	FALSE
chr7	116437206	A	G	0.00118	MET	+	FALSE
chr3	121154974	T	C	0.00183	POLQ	-	FALSE
chr3	124950419	C	A	0.00060	ZNF148	-	FALSE
chr1	226333556	C	A	0.00250	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	144815953	A	G	0.00348	NBPF20,NBPF9	+	FALSE
chr3	45721934	A	G	0.00639	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	145329094	G	C	0.00273	NBPF20,NBPF10	+	FALSE
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr3	113370193	C	T	4.09251E-05	USF3	-	FALSE	UCON34	SINE,Alu
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr19	18476206	A	G	0.00156	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr14	50053316	T	C	0.00115		.	FALSE	7SLRNA	SINE,Alu
chr1	145512151	C	A	0.00723	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1469787	C	T	0.00010	ATAD3A	+	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	9162394	T	C	0.00072		.	FALSE	AluSx	SINE,Alu
chr5	125962176	A	G	0.00020	PHAX	+	TRUE	AluSc	SINE,Alu
chr2	37327670	T	C	0.00021		.	FALSE
chr1	10042988	A	G	4.26240E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	10520099	T	C	0.00152		.	FALSE	AluSx	SINE,Alu
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr16	23682631	C	T	0.00960	DCTN5	+	FALSE
chr5	72801323	C	A	0.00119	BTF3	+	FALSE
chr1	114940216	T	G	0.00074	TRIM33	-	FALSE	(T)n	SINE,Alu
chr5	118175182	T	C	0.00205	DTWD2	-	TRUE	AluJr	SINE,Alu
chr8	91637754	A	T	0.00297	TMEM64	-	FALSE
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	11780004	G	T	0.00216	DRAXIN	+	FALSE
chr2	120022387	C	T	0.00728	STEAP3	+	FALSE
chr2	231683849	A	G	0.00786	CAB39	+	FALSE
chr16	88785189	T	C	0.00636	PIEZO1	-	TRUE	AluJr	SINE,Alu
chr1	36068281	T	C	0.00331	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	24223353	A	G	0.00083	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr2	64327544	G	T	0.00340	PELI1	-	FALSE
chr4	169910101	C	T	0.00026	CBR4	-	FALSE
chr1	228334277	C	T	0.00256	GUK1	+	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu
chr1	33149486	A	G	0.00874	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	217366673	A	G	0.00517		.	FALSE	AluSz	SINE,Alu
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr3	49395695	A	C	0.00159	GPX1	-	FALSE
chr1	10519064	T	C	0.00515		.	FALSE	AluSx3	SINE,Alu
chr17	40466890	G	T	0.00260	STAT3	-	FALSE	AluSc8	SINE,Alu
chr1	1252749	T	C	0.00875	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr4	25236017	T	C	2.76644E-09	PI4K2B	+	FALSE
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr3	14526625	T	G	0.00414	SLC6A6	+	FALSE
chr1	27204436	T	C	1.54117E-06		.	FALSE	AluSg7	SINE,Alu
chr14	50361164	C	T	0.00103	ARF6	+	FALSE	(T)n	SINE,Alu
chr3	10290507	G	C	0.00367	TATDN2	+	FALSE
chr1	11979814	G	A	0.00041	KIAA2013	-	FALSE
chr1	100490275	A	G	0.00748	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr2	55459820	C	T	0.00714	RPS27A	+	FALSE
chr1	28825418	A	G	0.00725	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr5	53840199	G	T	0.00857	SNX18	+	FALSE
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chrX	123046598	A	G	0.00371	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	19542250	T	C	0.00015	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	33071146	A	G	0.00899	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	32661594	C	T	0.00528	TXLNA	+	FALSE	(T)n	SINE,Alu
chr3	156258227	T	C	0.00094	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	33219771	G	C	0.00256	KIAA1522	+	FALSE
chr4	129796173	G	T	1.40481E-05	JADE1	+	FALSE
chr4	7765043	G	A	0.00071	AFAP1,AFAP1-AS1	+,-	FALSE
chr3	15113783	T	C	0.00127	RBSN	-	FALSE	AluSz6	SINE,Alu
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr1	89447839	C	G	0.00808	KYAT3,RBMXL1	-	FALSE
chr1	68624878	C	T	0.00465	GNG12-AS1,WLS	+,-	FALSE
chr4	2940026	T	C	3.38773E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	114443458	A	G	0.00320	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr2	70504926	A	G	0.00671	PCYOX1	+	FALSE	MER5A	SINE,Alu
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr2	128602967	T	G	0.00026		.	FALSE	AluSp	SINE,Alu
chr1	202821382	T	C	0.00983		.	FALSE	AluJr	SINE,Alu
chr1	3545198	T	C	0.00013	TPRG1L	+	FALSE
chr1	153920564	A	G	0.00323	CRTC2	-	FALSE
chr11	35017260	T	C	0.00224	PDHX	+	FALSE
chr2	101186088	C	T	0.00817	PDCL3	+	FALSE
chr4	6925237	C	G	0.00870	TBC1D14	+	FALSE
chr2	208620129	A	G	0.00061	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	28261662	A	G	0.00872	SMPDL3B	+	FALSE
chr1	145369589	T	C	0.00046	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	6283550	A	T	0.00225	ICMT	-	FALSE
chr5	122359502	A	C	0.00707	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	100654789	T	C	0.00014	DBT	-	TRUE	AluSz	SINE,Alu
chr1	36068227	T	C	0.00398	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	33148196	A	G	0.00756	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr17	41133090	A	T	0.00148	RUNDC1	+	FALSE
chr1	179042616	A	G	1.60543E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr2	75888160	A	C	0.00188	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr5	125961532	A	G	0.00039	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	100440553	A	G	9.79324E-05	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr6	109001952	A	G	0.00978	FOXO3	+	FALSE	(A)n	SINE,Alu
chr2	64687665	C	A	0.00976	LGALSL	+	FALSE
chr1	47717189	A	G	0.00384	STIL	-	FALSE
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr16	5134599	G	C	0.00355	ALG1,EEF2KMT	+,-	FALSE
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr19	59095456	A	G	0.00125	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr2	3502198	T	A	0.00764	ADI1	-	FALSE
chr1	6282315	T	C	5.02629E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr8	30536078	T	C	5.73232E-10	GSR	-	FALSE	AluJr	SINE,Alu
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr3	49142142	G	T	6.70614E-05	QARS	-	FALSE
chr5	49692280	T	C	9.73531E-05	EMB	-	FALSE	L2c	SINE,Alu
chr3	49396588	T	C	0.00533	RHOA	-	FALSE
chr1	33148211	A	G	9.09328E-07	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr2	32534897	A	G	0.00680		.	FALSE	AluSx1	SINE,Alu
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr1	36068276	T	C	0.00225	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	16932931	C	A	0.00191	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	160967856	T	C	0.00100	F11R	-	TRUE	AluSp	SINE,Alu
chr1	154554946	C	G	0.00488	ADAR	-	FALSE
chr19	19791650	A	G	1.64958E-05	ZNF101	+	TRUE	AluSc	SINE,Alu
chr8	42876058	A	G	0.00029	HOOK3	+	TRUE	AluSq2	SINE,Alu
chr12	98942690	A	G	3.03569E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	19543973	T	C	0.00236	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	881627	G	A	2.43828E-05	NOC2L	-	FALSE
chr1	45452227	G	C	0.00126	EIF2B3	-	FALSE
chr1	8072233	T	C	0.00647	ERRFI1	-	FALSE
chr3	188596752	A	G	0.00203	LPP	+	FALSE
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr12	121772025	T	C	0.00562	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr4	17804847	T	C	0.00306	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	65496187	G	A	0.00266	ACTR2	+	FALSE
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr1	86118417	T	G	0.00653	ZNHIT6	-	FALSE
chr2	128949342	A	G	0.00397	UGGT1	+	TRUE	AluSg	SINE,Alu
chr1	28566404	T	G	0.00963		.	FALSE	AluSx1	SINE,Alu
chr2	176789423	C	A	0.00441	LNPK	-	FALSE	MSTB1	SINE,Alu
chr1	10519932	T	C	0.00012		.	FALSE	AluJr	SINE,Alu
chr1	52824084	G	A	0.00207	CC2D1B	-	FALSE
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr1	114940227	T	C	0.00852	TRIM33	-	FALSE	(T)n	SINE,Alu
chr22	37962318	T	C	0.00884	CDC42EP1	+	FALSE
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	46076543	A	G	0.00156	NASP	+	TRUE	AluSx	SINE,Alu
chr10	70277096	T	C	0.00229	SLC25A16	-	FALSE	L2c	SINE,Alu
chr1	70718276	G	T	0.00836		.	FALSE
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr1	156692052	T	A	0.00369	ISG20L2	-	FALSE	AluY	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	120539691	G	T	0.00350	NOTCH2	-	FALSE
chr1	86117191	T	C	0.00987	ZNHIT6	-	TRUE	AluSg	SINE,Alu
chr3	197400501	C	G	0.00270	RUBCN	-	FALSE
chr1	154128827	A	T	0.00724	TPM3	-	FALSE
chr1	28835934	A	G	0.00193	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	174090321	C	A	0.00273	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr6	159395409	T	C	0.00136		.	FALSE
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr5	118174668	T	C	1.32199E-05	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	33960062	A	G	0.00437	ZSCAN20	+	FALSE
chr1	54493259	T	C	0.00203	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	36068295	T	C	0.00076	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	15456307	T	C	0.00939	METTL6	-	TRUE	AluJr	SINE,Alu
chr1	233086456	T	C	7.28865E-05	NTPCR	+	FALSE
chr1	35650022	C	A	0.00762	SFPQ	-	FALSE
chr1	207943385	A	G	0.00751	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	16892918	T	C	0.00158	NBPF1	-	FALSE
chr6	74134869	T	C	0.00024	MB21D1	-	TRUE	AluSz	SINE,Alu
chr1	205686520	A	G	0.00980	NUCKS1	-	FALSE
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr17	421034	T	C	0.00998	VPS53	-	TRUE	AluSx1	SINE,Alu
chr8	143352206	T	C	0.00500	TSNARE1	-	FALSE
chr1	179852074	T	C	0.00338	TOR1AIP1	+	FALSE
chr1	26138325	G	A	0.00027	SEPN1	+	FALSE
chr1	1668168	G	T	0.00344	SLC35E2	-	FALSE	AluSz	SINE,Alu
chr5	40829980	T	C	0.00752		.	FALSE	AluSp	SINE,Alu
chr3	127790249	A	G	0.00056	RUVBL1,SEC61A1	+,-	FALSE
chr1	179044180	A	G	0.00416	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	1231173	C	T	1.33148E-07	ACAP3	-	FALSE
chr3	45960557	C	T	1.72644E-06	FYCO1	-	FALSE
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr1	10043053	A	G	0.00318	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	32372358	C	T	0.00303	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	22854931	C	A	7.08508E-09	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	3806074	G	A	0.00354	C1orf174	-	FALSE	AluSp	SINE,Alu
chr5	56177845	A	T	0.00420	MAP3K1	+	FALSE
chr1	142804438	G	T	0.00618		.	FALSE
chr1	6282224	T	C	0.00785	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	74442550	A	T	0.00826		.	FALSE
chr1	33148706	A	G	0.00050	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr11	68523338	T	C	0.00817	CPT1A	-	TRUE	AluSq	SINE,Alu
chr4	120979130	T	C	0.00729		.	FALSE	AluSg4	SINE,Alu
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	7828190	A	C	0.00049	CAMTA1	+	FALSE	(A)n	SINE,Alu
chr1	19543465	T	C	0.00709	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	42643425	G	A	0.00482	NKTR	+	FALSE	L2a	SINE,Alu
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr1	28826085	A	G	0.00281	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	144902696	A	T	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr2	28639641	C	G	0.00431		.	FALSE
chr5	125961649	A	G	0.00302	PHAX	+	TRUE	AluSz6	SINE,Alu
chr15	59428230	G	A	0.00891	MYO1E	-	FALSE	MLT1B	SINE,Alu
chrX	77083548	T	C	0.00205	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr8	124027562	C	T	0.00674	DERL1	-	FALSE
chr8	12880246	A	G	0.00012	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr4	52888026	A	C	0.00677	SGCB	-	FALSE
chr12	133297974	A	G	6.19654E-10	PGAM5	+	TRUE	AluJo	SINE,Alu
chr3	10192744	A	G	3.36147E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	17488286	T	G	0.00027	QDPR	-	FALSE
chr2	37328097	T	C	0.00018		.	FALSE
chr8	8099397	T	C	0.00975	FAM86B3P	+	FALSE
chr13	38936619	G	T	0.00212	UFM1	+	FALSE
chr17	10578246	A	G	0.00093		.	FALSE
chr1	229439639	T	A	0.00276	RAB4A	+	FALSE
chr1	36770605	C	T	8.58098E-05	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	44072018	C	T	0.00160	PTPRF	+	FALSE
chr1	9161231	T	C	0.00481		.	FALSE	AluSx	SINE,Alu
chr3	172350135	A	T	9.93187E-07	NCEH1	-	FALSE
chr1	20976589	C	T	0.00125	PINK1,PINK1-AS	+,-	FALSE
chr1	114940228	C	T	0.00127	TRIM33	-	FALSE	(T)n	SINE,Alu
chr16	19715588	T	C	0.00063		.	FALSE	AluSg	SINE,Alu
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr3	5257975	A	T	9.78592E-05	EDEM1	+	FALSE
chr6	42855962	A	G	0.00045	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	931935	T	C	0.00913		.	FALSE
chr1	19543457	T	C	0.00059	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr15	45775144	T	C	0.00867	SLC30A4	-	TRUE	AluJr	SINE,Alu
chr1	154128836	A	T	0.00090	TPM3	-	FALSE
chr1	24999101	G	T	0.00100	SRRM1	+	FALSE
chr1	988503	A	T	0.00402	AGRN	+	FALSE
chr1	19543282	T	C	0.00228	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr19	21367098	A	G	0.00147	ZNF431	+	TRUE	AluSc	SINE,Alu
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr7	129251289	C	T	0.00808		.	FALSE
chr2	69688901	T	C	0.00503	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	148751869	A	G	0.00011		.	FALSE
chr16	11929653	C	T	0.00333	RSL1D1	-	FALSE	LTR14B	SINE,Alu
chr1	35817023	G	C	0.00030	ZMYM4	+	FALSE
chr2	37331019	T	C	0.00033		.	FALSE	AluSx1	SINE,Alu
chr3	14183410	T	C	1.62266E-06	TMEM43	+	FALSE
chr7	74169234	G	T	8.95897E-05	GTF2I	+	FALSE
chr2	202038657	A	G	0.00354		.	FALSE	AluSx1	SINE,Alu
chr3	15483019	G	T	0.00751	EAF1	+	FALSE
chr2	217366674	A	G	0.00889		.	FALSE	AluSz	SINE,Alu
chr1	36068325	T	C	0.00065	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	19543249	T	C	1.15194E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	68167935	A	G	0.00390	GNG12	-	FALSE
chr1	36770065	C	T	0.00131	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr1	145688671	A	T	0.00822	NBPF20,NBPF10,RNF115	+	FALSE
chr1	2333763	G	A	0.00867	RER1	+	FALSE
chr13	76378459	T	C	0.00239	LMO7	+	FALSE
chr1	145499276	C	T	0.00581	NBPF20,NBPF10,LIX1L	+	FALSE
chr7	127941334	C	T	0.00440	MGC27345	-	FALSE	MIR3	SINE,Alu
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr5	134062606	T	G	0.00193	SEC24A	+	FALSE
chr2	10711446	T	C	0.00014	NOL10	-	FALSE	MSTA	SINE,Alu
chr21	34728215	A	G	0.00153	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	10519936	T	C	0.00029		.	FALSE	AluJr	SINE,Alu
chr1	2113565	T	G	0.00429	PRKCZ	+	FALSE
chr1	35644502	A	T	0.00702	SFPQ	-	FALSE	(A)n	SINE,Alu
chr22	31744347	A	G	0.00113	LINC01521	+	TRUE	AluSp	SINE,Alu
chr1	24796069	A	C	0.00403	NIPAL3	+	FALSE
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr1	1152631	C	A	0.00439	SDF4	-	FALSE
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr7	75958149	A	C	0.00050	YWHAG	-	FALSE
chr14	75202705	A	G	0.00017	FCF1	+	TRUE	AluSc	SINE,Alu
chr15	41591451	A	G	1.78515E-09	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr6	31324705	A	C	0.00179		.	FALSE
chr4	6677063	G	A	0.00087	LOC93622	+	FALSE
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr17	57279257	A	G	0.00077	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	62627191	A	G	0.00146	PATJ	+	TRUE	AluSx	SINE,Alu
chr4	57326329	A	G	0.00077	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	109401283	C	T	0.00039	RANBP2	+	FALSE
chr1	148241604	G	T	0.00756	NBPF8	-	FALSE	U1	SINE,Alu
chr17	27586605	G	A	0.00053	NUFIP2	-	FALSE
chr1	231557255	C	G	0.00056	EGLN1	-	FALSE	(GCC)n	SINE,Alu
chr5	138705183	T	A	9.01084E-05	PAIP2,SLC23A1	+,-	FALSE
chr2	37327676	T	C	0.00462		.	FALSE
chr3	197612267	A	G	0.00341		.	FALSE	AluSp	SINE,Alu
chr1	9294903	C	G	0.00147	H6PD	+	FALSE
chr2	37331555	T	C	0.00171		.	FALSE	AluJb	SINE,Alu
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr12	125511958	A	G	0.00010	THRIL	-	FALSE	AluSx1	SINE,Alu
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr17	7482018	C	A	9.29146E-05	SENP3-EIF4A1,EIF4A1	+	FALSE
chr1	100488177	C	T	0.00080	SLC35A3	+	FALSE
chr18	7012123	A	G	0.00065	LAMA1	-	FALSE
chr1	150241230	G	T	7.51943E-05	APH1A	-	FALSE
chr14	74526976	T	C	1.13179E-06	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr19	58361328	G	C	0.00972	ZNF587	+	FALSE
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr16	87864349	C	A	0.00981	SLC7A5	-	FALSE
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr1	16890130	A	C	0.00412	NBPF1	-	FALSE
chr1	151288172	G	A	0.00312	PI4KB	-	FALSE
chr6	36894338	A	G	0.00607	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	33145959	T	G	0.00755	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr13	41635235	C	T	0.00400		.	FALSE
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	46612340	G	T	0.00094	EPAS1	+	FALSE
chr2	99812398	A	G	0.00019	MRPL30	+	TRUE	AluSx	SINE,Alu
chr4	38945689	C	T	1.01800E-05	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr1	10517314	T	C	0.00073		.	FALSE	AluJr	SINE,Alu
chr5	149013844	T	A	0.00366	ARHGEF37	+	FALSE
chr2	157440644	G	C	0.00394	GPD2	+	FALSE
chr1	205115428	C	T	4.25965E-05	DSTYK	-	FALSE
chr3	40577745	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	52306079	T	A	0.00033	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr6	74133914	T	C	0.00014		.	FALSE	AluY	SINE,Alu
chr1	31532379	A	G	0.00092	PUM1	-	FALSE
chr2	152976703	T	A	0.00126	STAM2	-	FALSE
chr2	201774185	T	C	6.12175E-05		.	FALSE	AluSz	SINE,Alu
chr1	145688682	A	C	0.00468	NBPF20,NBPF10,RNF115	+	FALSE
chr2	233446568	G	A	0.00900	EIF4E2	+	FALSE
chr1	54692331	T	C	0.00549	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	143231313	G	A	0.00137		.	FALSE
chrX	77083982	T	C	0.00086	MAGT1	-	TRUE	AluSz	SINE,Alu
chr19	12742509	A	G	0.00717		.	FALSE	AluSx	SINE,Alu
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr1	93297607	C	T	0.00016	RPL5	+	FALSE

RBP	PNPT1
Knock-Method	shRNA
RBP Family	RNase_PH
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR880DEH
Platform	HiSeq
Pubmed ID	32252787

PNPT1 - Target Gene Network