Dataset Overview
RBPPUM2
Knock-MethodshRNA
RBP FamilyPUF
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR210DML
PlatformHiSeq
Pubmed ID32252787

PUM2 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of PUM2
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of PUM2


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr178378932AG0.00372MYH10-FALSE
chr2025428384AG0.00195GINS1+TRUEAluSzSINE,Alu
chr1179077613TC0.00731ABL2-FALSE
chr110520378TC0.00743.FALSEAluSx1SINE,Alu
chr39833986CT2.34147E-05TADA3-FALSE
chr8146200325TC0.00599ZNF252P-TRUEAluScSINE,Alu
chr237334139TC0.00146EIF2AK2-TRUEAluSzSINE,Alu
chr363996227GT0.00114PSMD6-AS2,PSMD6+,-FALSE
chr2201774279TC9.55391E-05.FALSEAluSzSINE,Alu
chr162627128AG0.00087PATJ+TRUEAluSxSINE,Alu
chr738764395TC0.00139VPS41-TRUEAluSpSINE,Alu
chr1110136329GT0.00993GNAI3+FALSE
chr126143697GC0.00778SEPN1+FALSE
chr13416449CA0.00748MEGF6-FALSE
chr1117644949CG0.00862TTF2+FALSE
chr167451522AT0.00949MIER1+FALSE
chr2102508659AT0.00261MAP4K4+FALSE
chrX54587254AG0.00019GNL3L+TRUEAluSq2SINE,Alu
chr322424405TA0.00766.FALSE
chr1778091513GA0.00810GAA+FALSE
chr488059663GT0.00165AFF1+FALSE(GT)nSINE,Alu
chr1160967833TC0.00717F11R-TRUEAluSpSINE,Alu
chr1109192040TC6.39517E-05HENMT1-TRUEAluJrSINE,Alu
chr119543247TC5.35430E-06LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr237330431TC0.00231.FALSEAluSq2SINE,Alu
chr3120113403TG0.00364FSTL1-FALSE
chr310302056AG0.00018TATDN2+FALSE
chr1109818161CT0.00864CELSR2+FALSE
chr161922059CA0.00132NFIA+FALSE(A)nSINE,Alu
chr1145283986CT0.00814NBPF20,NOTCH2NL+FALSE
chr127108245TC0.00265ARID1A+FALSE
chr1145369476AG0.00332NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr1180943529CT0.00297STX6-FALSE
chr124798089GA0.00815NIPAL3+FALSE
chr138326774TC0.00664INPP5B-TRUEAluJrSINE,Alu
chr138174665GA0.00339CDCA8+FALSE
chr378646942TG0.00093ROBO1-FALSE
chr333186111TC0.00349CRTAP+FALSELTR16A1SINE,Alu
chr6114182982CA0.00308MARCKS+FALSE
chr144402565GA0.00010ARTN+FALSE
chr417803681TC3.85233E-06DCAF16-TRUEAluYSINE,Alu
chr13546128AG0.00213TPRG1L+FALSEAluSzSINE,Alu
chr4761850TC0.00026PCGF3+FALSE
chr1161928771GA0.00294ATF6+FALSE
chr11417974CT0.00677ATAD3B+FALSE
chr1117618067CT0.00118TTF2+FALSE
chr312940374TG0.00505IQSEC1-FALSE
chr1159946779GA0.00019LINC01133+FALSE(GAAA)nSINE,Alu
chr3152555188GT0.00016P2RY1+FALSE
chr1144868170CT0.00750NBPF20,PDE4DIP+,-FALSE
chr11647871TC7.46571E-06CDK11B,CDK11A-FALSE
chr1161753841GA0.00039ATF6+FALSE
chr19160900TC0.00893.FALSEAluJbSINE,Alu
chr1179989742GC9.63603E-05CEP350+FALSE
chr2222050366TC0.00449PPIL2+FALSEMER5ASINE,Alu
chr1143189042CT0.00087LOC102723769-FALSEL1MC4SINE,Alu
chr6111588769AG2.24603E-05MFSD4B+TRUEAluYm1SINE,Alu
chr19161179TC0.00570.FALSEAluSxSINE,Alu
chr194351064AT0.00620GCLM-FALSE
chr123636452AG0.00294HNRNPR-FALSE
chr720177613TC0.00913MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr417802955TC0.00071DCAF16-FALSEAluSzSINE,Alu
chr9136335345GA0.00490CACFD1+FALSE(TG)nSINE,Alu
chr8144684474TC0.00058.FALSE
chr146077268AG0.00311NASP+TRUEAluSc8SINE,Alu
chr1210025751GA4.42687E-05DIEXF+FALSETigger4aSINE,Alu
chr1075008955TC0.00058DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr2223765491CT0.00689ACSL3+FALSE
chr2128620436CT0.00342AMMECR1L-FALSE
chr127202959TC0.00094.FALSEAluSq2SINE,Alu
chr5125961455AG0.00029PHAX+TRUEAluSz6SINE,Alu
chr1201846630CA7.51318E-05IPO9+FALSE(CA)nSINE,Alu
chr136068210TC0.00025PSMB2-TRUEAluScSINE,Alu
chr1689627988GT5.83717E-06RPL13+FALSE
chr128826118AG0.00023PHACTR4+TRUEAluJbSINE,Alu
chr555235967AG0.00639IL6ST-FALSE(AT)nSINE,Alu
chr237330172TG0.00972.FALSE
chr1227845283CA0.00809ZNF678+FALSE
chr4159176109CA0.00042TMEM144+FALSEMIRSINE,Alu
chr1109475569AG0.00046GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr16582425TC0.00039NOL9-TRUEAluSx1SINE,Alu
chr153288894AG0.00066ZYG11B+TRUEAluJoSINE,Alu
chr16583036TC0.00296NOL9-TRUEAluSx4SINE,Alu
chr237330507TC9.86666E-05.FALSEAluSq2SINE,Alu
chr12106460001GA2.23324E-05NUAK1-FALSE
chr919376249GT5.55883E-05.FALSE
chr111347164AC0.00667UBIAD1+FALSE
chr225962253AT0.00784ASXL2-FALSE
chr153291420AG6.80791E-05ZYG11B+TRUEAluJrSINE,Alu
chr1145509570AG0.00028NBPF20,NBPF10,RBM8A+TRUEAluJrSINE,Alu
chr16283264TC0.00521ICMT-TRUEAluSx3SINE,Alu
chr744841791CT0.00182PPIA+FALSE
chr1184762524TC0.00778FAM129A-TRUEAluSzSINE,Alu
chr310192784AG1.73909E-05VHL+TRUEAluSx1SINE,Alu
chr1112170157CG0.00335RAP1A+FALSEL1ME4aSINE,Alu
chr1346530764TG0.00385.FALSE
chr439551167TC0.00361UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr4153701130CT2.11271E-05ARFIP1+FALSE
chr128835937AG0.00121SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr642856924AG2.08684E-05RPL7L1+TRUEAluSpSINE,Alu
chr1061548859AC0.00011CCDC6-FALSE
chr2239127060AG0.00647GTPBP1+FALSE
chr1900725TG0.00110KLHL17+FALSE(TTTA)nSINE,Alu
chr110520378TC0.00047.FALSEAluSx1SINE,Alu
chr4152020782CT0.00989RPS3A+FALSE
chr116861804GA0.00903LOC100132147-FALSEtRNA-Glu-GAASINE,Alu
chr593018884AC0.00538FAM172A-FALSE(TCA)nSINE,Alu
chr121780000GT0.00153NBPF3+FALSEERVL-E-intSINE,Alu
chr340578935AG0.00063ZNF621+TRUEAluJrSINE,Alu
chr8144940222AC0.00202EPPK1-FALSE
chr116889575TC0.00467NBPF1-TRUE
chr123519110GA0.00268HTR1D-FALSEAluScSINE,Alu
chr679649800CG0.00864PHIP-FALSE
chr2176792488GT0.00195LNPK-FALSE
chr9128001436CT0.00052HSPA5-FALSE
chr5149363273AG0.00587SLC26A2+TRUEAluJrSINE,Alu
chr2042933642TC0.00275FITM2-TRUEAluJoSINE,Alu
chr11684347CT0.00550NADK-FALSE
chr125169634AG0.00531CLIC4+FALSE
chr2127826533AG0.00942BIN1-FALSE
chr642857067AG0.00310RPL7L1+TRUEAluSpSINE,Alu
chr116133978TC0.00625UQCRHL-FALSE
chrX3526616GA0.00971PRKX-FALSE
chr47762675CT3.92312E-07AFAP1,AFAP1-AS1+,-FALSE
chr7131188652GC0.00684PODXL-FALSEMIR3SINE,Alu
chr373115390CT0.00462PPP4R2+FALSE(AT)nSINE,Alu
chr186046472GT0.00409CYR61+FALSE
chr135886030TC0.00606ZMYM4+FALSE
chr194351064AT0.00212GCLM-FALSE
chr110518921CT0.00398.FALSEAluSx3SINE,Alu
chr1205684067TC0.00499NUCKS1-FALSE
chr1101444071GA0.00963SLC30A7+FALSEMIR3SINE,Alu
chr1474388908TC0.00835ZNF410+FALSE
chr13114204255AG0.00134TMCO3+FALSE
chr140219065CT0.00232PPIE+FALSE
chr124798499TC0.00028NIPAL3+FALSE(T)nSINE,Alu
chr1249745500AG0.00265DNAJC22+TRUEAluSx3SINE,Alu
chr310193683TG0.00681VHL+FALSEAluJrSINE,Alu
chr1203821865CT0.00222ZC3H11A+FALSE
chr264863970CT9.52027E-09SERTAD2-FALSE
chr388191444AC0.00020CGGBP1,ZNF654+,-FALSE
chr310142949CT0.00721FANCD2,FANCD2OS+,-FALSE
chr2170488325AG0.00698PPIG+FALSE
chr131905889AG0.00483SERINC2+FALSE
chr1156878044GA9.48586E-05PEAR1+FALSE
chr1179044181AG0.00083FAM20B+TRUEAluSxSINE,Alu
chr286249961TC0.00173LOC90784-TRUEAluJrSINE,Alu
chr167874859TC0.00071SERBP1-TRUEAluSxSINE,Alu
chr1757279258AG0.00095PRR11+TRUEAluSq2SINE,Alu
chr182804129GA0.00157SMCHD1+FALSE
chr1145513051AG0.00269NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr118707394TA4.23595E-06RPL27A+FALSE
chr1150281017AG0.00057MRPS21+TRUEAluSzSINE,Alu
chr3122283289CA0.00072DTX3L,PARP9+,-FALSE
chr1155695998AG0.00574DAP3+TRUEAluSpSINE,Alu
chr996439041AT0.00751PHF2+FALSE
chr357549504AG0.00384PDE12+TRUEAluJbSINE,Alu
chr175288079AC0.00085RABEP1+FALSE
chr2131906031CT0.00439PLEKHB2+FALSE
chr579923430TC0.00817DHFR-TRUEAluJrSINE,Alu
chr9132266624AG5.52448E-06LINC00963+TRUEAluSxSINE,Alu
chr1114443606AG0.00014AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr1108742632CT0.00933SLC25A24-FALSE
chr2025428547AG7.92315E-05GINS1+TRUEAluJbSINE,Alu
chr12120898658AG0.00372GATC+TRUEAluYSINE,Alu
chr579923293TC0.00039DHFR-TRUEAluJrSINE,Alu
chr128661633AG0.00053MED18+TRUEAluSgSINE,Alu
chr1168220489AG0.00319.FALSEAluSz6SINE,Alu
chr16640640TG0.00982ZBTB48+FALSE
chr1743002237CA0.00141KIF18B-FALSE
chr146076462AG1.23194E-07NASP+TRUEAluSxSINE,Alu
chr178445292AG7.48186E-07DNAJB4+FALSE
chr632789807CT0.00281.FALSE
chr5139931633CA0.00014SRA1-FALSE
chr1453242859TC9.31997E-05GNPNAT1-TRUEAluJrSINE,Alu
chr1226172221TC0.00030SDE2-FALSEL1MEfSINE,Alu
chr136068052GT1.69686E-12PSMB2-FALSEL1ME4bSINE,Alu
chr3122293773AT0.00147DTX3L+FALSE
chr128835847AG5.60567E-05SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr1144828764GT0.00976NBPF20,NBPF9+FALSE
chr132373837GT0.00068PTP4A2-FALSE(T)nSINE,Alu
chr721941586AC0.00016CDCA7L-FALSE
chr4165998694TC0.00041TMEM192-TRUEAluSgSINE,Alu
chr579923998TC0.00753DHFR-TRUEAluSpSINE,Alu
chr108116464GA0.00695GATA3+FALSEA-richSINE,Alu
chr3185826740TG0.00041ETV5-FALSE
chr2200813126TC0.00713TYW5-FALSE
chr1201846617AC0.00380IPO9+FALSE(CA)nSINE,Alu
chr12123253741AG0.00134DENR+TRUE(AT)nSINE,Alu
chr1229652587TC0.00732ABCB10-FALSE
chr1565442476TC0.00084CLPX-TRUEAluSg4SINE,Alu
chr190478690AC0.00035ZNF326+FALSE
chr1116947126CA4.37114E-09ATP1A1,ATP1A1-AS1+,-FALSE
chr190049040AG0.00190LRRC8B+FALSE
chr128422194AC0.00018.FALSE
chr11595540TC0.00048CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr2176792357AG7.02808E-05LNPK-FALSE
chr1713710GC0.00448LOC100288069-FALSEFRAMSINE,Alu
chr413570943TG2.17672E-09BOD1L1-FALSE
chr136522615AG0.00658.FALSEAluScSINE,Alu
chr643738977CT0.00088VEGFA+FALSE
chr133066859AG0.00403ZBTB8A+TRUEAluSq4SINE,Alu
chr4152025793TA0.00675RPS3A+FALSE
chr1146650289CT0.00024PDIA3P1+FALSE
chr540832555AT5.95918E-06RPL37-FALSE
chr652365328TG0.00983TRAM2-FALSE(T)nSINE,Alu
chr2204294497CT0.00203ABI2+FALSE
chr152817504TC0.00934CC2D1B-TRUEAluSg4SINE,Alu
chr2206987597TC0.00085.FALSEAluJbSINE,Alu
chr116890428TA1.76753E-05NBPF1-FALSE
chr110517290TC0.00437.FALSEAluJrSINE,Alu
chr237331019TC0.00033.FALSEAluSx1SINE,Alu
chr2118854086GC0.00066INSIG2+FALSE
chr1225357680TC0.00861ETFRF1+FALSE
chr115755550AC0.00969EFHD2+FALSE
chr1118502087CT0.00585WDR3,SPAG17+,-FALSE
chr167875011GT0.00359SERBP1-FALSE
chr269548320CT7.68354E-05GFPT1-FALSE
chr133148691AG0.00547SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1658054472TC0.00530USB1+FALSE
chr5130729522TG0.00506CDC42SE2+FALSE(T)nSINE,Alu
chr11252468TC0.00096CPSF3L-TRUEAluJrSINE,Alu
chr5122165482CT0.00367SNX2+FALSE(AC)nSINE,Alu
chr7116147752AG0.00031CAV2+FALSE(AAAAGAAA)nSINE,Alu
chr187569223GC0.00436HS2ST1+FALSE
chr11656557TC0.00012SLC35E2-TRUEAluSzSINE,Alu
chr720177519TC0.00885MACC1,LOC101927668-TRUEAluSxSINE,Alu
chr11252221TC0.00728CPSF3L-TRUEAluSxSINE,Alu
chr1153963246GA6.32081E-05RPS27+FALSE
chr18045340CA0.00059PARK7+FALSE
chr11769459TC0.00082PDDC1-TRUEAluSq2SINE,Alu
chr11534826CT0.00382FNDC10-FALSE
chr830536152TC0.00015GSR-TRUEAluJrSINE,Alu
chr1142688506TC0.00337.FALSE
chr1204526648AG0.00302MDM4+TRUEAluSxSINE,Alu
chr146076533AG1.88265E-05NASP+TRUEAluSxSINE,Alu
chr177124772GA0.00175ACADVL+FALSE
chr1143915879AC0.00097.FALSE
chr3179115501AT1.86203E-06GNB4-FALSE
chr285548074TC0.00428TGOLN2-FALSE
chr1100731820GA0.00771RTCA+FALSE
chr152383255TC0.00708RAB3B-FALSEAluJrSINE,Alu
chr1120165040TC0.00107ZNF697-FALSE
chr1726955330AC0.00291KIAA0100-FALSE
chr19642828TA0.00148SLC25A33+FALSE
chr136921372AT0.00259MRPS15-FALSE
chr193602673CT0.00252MTF2+FALSE
chr473922981TC0.00491COX18-TRUEAluSzSINE,Alu
chr2128602913GA0.00230.FALSE
chr2132481470CT0.00594C2orf27A+FALSE
chr2204300093AC0.00105RAPH1-FALSEFLAM_CSINE,Alu
chr7128143932AG0.00332.FALSEAluSq2SINE,Alu
chr1115119377AT0.00157BCAS2-FALSE
chr123834008AC0.00374E2F2-FALSEAluSzSINE,Alu
chr1150446028GT0.00624RPRD2+FALSE
chr1145284883AG0.00062NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr124134721TC0.00448HMGCL-FALSE
chr150883798TC0.00156DMRTA2-FALSE
chr642856158AG0.00118RPL7L1+TRUEAluSzSINE,Alu
chr89639522AG0.00823TNKS+TRUEMER53SINE,Alu
chr2100019496AG0.00789REV1-FALSE
chr417628548AG0.00991.FALSEAluSzSINE,Alu
chr110519932TC0.00710.FALSEAluJrSINE,Alu
chr5139931630AT0.00052SRA1-FALSE
chr1955597GT3.81431E-06AGRN+FALSE
chr133149375AG0.00840SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr136186320TC0.00281.FALSEAluSgSINE,Alu
chr2202032107AG0.00401CFLAR+TRUEAluJoSINE,Alu
chr1765334766TC4.45484E-05PSMD12-TRUEAluSqSINE,Alu
chr116912099GC0.00450NBPF1-FALSE
chr366428450GA0.00355SLC25A26+FALSE
chr1533064148TC1.59288E-05FMN1-FALSE
chr314985983AT6.81677E-14FGD5-AS1-FALSE
chr553841241TA0.00179SNX18+FALSE
chr1184762627TC0.00519FAM129A-TRUEAluSzSINE,Alu
chr232532809AG0.00255.FALSEAluSx1SINE,Alu
chr1169101269TG0.00307ATP1B1+FALSE(T)nSINE,Alu
chr2191067764AT0.00165C2orf88+FALSE
chr189648329TC0.00093GBP4-TRUEAluYg6SINE,Alu
chr1204524400AG0.00029MDM4+TRUEAluYSINE,Alu
chr6158613393AT0.00108GTF2H5+FALSE
chr275882576TC0.00328MRPL19+FALSE
chr4843695AG0.00602GAK-FALSE
chr1144852203TG0.00518NBPF20,PDE4DIP+,-FALSE
chr629911284TC0.00019.FALSE
chr133148691AG2.12433E-06SYNC,RBBP4+,-FALSEAluScSINE,Alu

Differential Expression Gene Analysis