Dataset Overview
RBPWRN
Knock-MethodshRNA
RBP FamilyDNA_pol_A_exo1
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR165BCF
PlatformHiSeq
Pubmed ID32252787

WRN - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of WRN
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of WRN


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1144955288AG0.00574NBPF20,PDE4DIP+,-FALSE
chr154691921GA0.00010SSBP3-FALSE
chr345267310CT0.00038TMEM158-FALSE
chr7193091CT1.15297E-06FAM20C+FALSE
chr1225974592TG2.09928E-05SRP9+FALSEAluJrSINE,Alu
chr1675479331TC0.00725TMEM170A-TRUEAluJbSINE,Alu
chr9131812176CT0.00220MIGA2+FALSE
chr1176176230GA0.00168RFWD2-FALSE
chr3156259314TC2.71784E-05SSR3-TRUEAluSq2SINE,Alu
chr3142776250AC0.00926U2SURP+FALSE
chr1145688665TA0.00015NBPF20,NBPF10,RNF115+FALSE
chr112677549TA1.84464E-05DHRS3-FALSE(A)nSINE,Alu
chr1100343254GA0.00725AGL+FALSE
chr2201774264TC0.00639.FALSEAluSzSINE,Alu
chr3191116133CT0.00032CCDC50+FALSE
chr1205583612CA0.00311ELK4-FALSE
chr3178978648GA0.00479KCNMB3-FALSE
chr195658342AT0.00123TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr5121400545AT0.00740LOX-FALSE
chr121101369TC0.00244HP1BP3-TRUEAluScSINE,Alu
chr337407769AT0.00406GOLGA4+FALSE
chr151434560GA6.87938E-05CDKN2C+FALSE
chr286979093GA0.00591RMND5A+FALSE
chr894744813CT5.22032E-05RBM12B-FALSE
chr1684778690CT0.00799USP10+FALSE
chr1648388382AG0.00301MIR5095+TRUEAluSzSINE,Alu
chr398518158AT0.00960DCBLD2-FALSE
chr193826819AT0.00086DR1+FALSE(GTTTT)nSINE,Alu
chr123240255GA0.00873EPHB2+FALSE
chr237330172TG0.00972.FALSE
chr2183622547TG0.00346DNAJC10+FALSE
chr7102277600TC0.00240POLR2J2,UPK3BL-TRUEAluScSINE,Alu
chr237478348TA0.00392PRKD3-FALSE
chr110517527TC8.32015E-05.FALSEAluSx1SINE,Alu
chr1144816555CT0.00530NBPF20,NBPF9+FALSE
chr147746678GC0.00374STIL-FALSE
chr574072638GA0.00431NSA2+FALSE
chr110520378TC0.00047.FALSEAluSx1SINE,Alu
chr358306686AG0.00970.FALSEAluSzSINE,Alu
chr1327538AG0.00010.FALSE
chr145975358AG0.00807MMACHC+TRUEAluSg7SINE,Alu
chr631947917CT0.00670.FALSE
chr12123346997GC0.00275HIP1R+FALSE
chr12123253741AG0.00134DENR+TRUE(AT)nSINE,Alu
chr42940486TC7.87098E-05NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr116932912TC0.00808NBPF1-FALSEL1MC2SINE,Alu
chr1204524400AG0.00029MDM4+TRUEAluYSINE,Alu
chr1154554947TG0.00511ADAR-FALSE
chr261413040TA0.00675AHSA2+FALSE(ATTTTAT)nSINE,Alu
chr340503561AT0.00012RPL14+FALSE
chr6132780768GA0.00668STX7-FALSE
chr352448770AG0.00498PHF7+TRUEAluJbSINE,Alu
chr119653870TC0.00477PQLC2+FALSE
chr5121362875AG0.00652SRFBP1+TRUEFRAMSINE,Alu
chr254014303AG0.00901GPR75-ASB3,ERLEC1+,-FALSE
chr1218617543GA0.00291TGFB2+FALSE
chr5151041877CA1.29615E-05SPARC-FALSE
chr186049363CT0.00064CYR61+FALSE
chr1173793106CT0.00772CENPL-FALSE
chr347554503TG0.00720ELP6-FALSEAluSxSINE,Alu
chr265496187GA0.00103ACTR2+FALSE
chr1075009921TC5.40286E-05DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr1212535032TG0.00028PPP2R5A+FALSE
chr1211533352AG0.00025TRAF5+FALSE
chr1212459257AG0.00068PPP2R5A+FALSE
chr122357435AC0.00454LINC00339+FALSE
chr1193055149AG0.00589TROVE2+FALSE
chr116892938TC0.00569NBPF1-FALSE
chr1113672634AG0.00967.FALSEAluJbSINE,Alu
chr119542269TC0.00744LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr123885230CG0.00075ID3-FALSE
chrX23721422AC0.00160.FALSE
chr2157440644GC0.00394GPD2+FALSE
chr153291435AG0.00790ZYG11B+TRUEAluJrSINE,Alu
chr237327590TC0.00063.FALSE
chr146076462AG0.00730NASP+TRUEAluSxSINE,Alu
chr1765335454TC9.75664E-07PSMD12-TRUEAluSxSINE,Alu
chr145975286AG0.00200MMACHC+TRUEAluSg7SINE,Alu
chr2102484490GT0.00635MAP4K4+FALSE
chr239009427AG0.00673.FALSEAluSx3SINE,Alu
chr1533064461CT0.00653FMN1-FALSE
chr1144823139GA0.00941NBPF20,NBPF9+FALSE
chr7138740037GC0.00598ZC3HAV1-FALSE
chr642857067AG0.00310RPL7L1+TRUEAluSpSINE,Alu
chr2153512503CT0.00082PRPF40A-FALSE
chr237328013TC0.00765.FALSE
chr123884661GA0.00205ID3-FALSE
chr2105881071CA0.00851TGFBRAP1-FALSE
chr6150045919TC0.00206NUP43-TRUEAluSqSINE,Alu
chr2190617700TC1.38394E-05OSGEPL1-FALSE
chr110521130TC1.15946E-05DFFA-TRUEAluYSINE,Alu
chr119447843CG0.00345UBR4-FALSE
chr116889566TC0.00436NBPF1-TRUE
chr1231557255CG0.00056EGLN1-FALSE(GCC)nSINE,Alu
chr2162849312GC0.00840DPP4-FALSE
chr5138618619AG0.00513SNHG4,MATR3+TRUEAluSxSINE,Alu
chr7158719116AG0.00824WDR60+FALSE
chr119810693GC0.00042CAPZB-FALSE
chr76501829TA0.00081KDELR2-FALSE
chr185278156CT0.00663.FALSEAluSz6SINE,Alu
chr5118175329TC2.47285E-05DTWD2-TRUEAluJrSINE,Alu
chr190496244CT0.00595ZNF326+FALSEAluJrSINE,Alu
chr110520145TC0.00424.FALSEAluSxSINE,Alu
chr190401562CA0.00057LRRC8D+FALSE
chr29629290TG0.00180ADAM17-FALSE(TGT)nSINE,Alu
chr1569492TC0.00743.FALSE
chr1419686757AG0.00565DUXAP10+FALSE
chr1941220529CT0.00175COQ8B-FALSE
chr1746024807CT0.00295PNPO+FALSE
chr1145512098AG0.00707NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chrM9988TC0.00011.FALSE
chr237328034TC6.77479E-07.FALSE
chr5131715011AG0.00761SLC22A5+FALSE
chr1163116048GT3.38683E-05RGS5-FALSE
chr1298942696AG3.06836E-07TMPO+TRUEAluScSINE,Alu
chr537291446TC6.87884E-05.FALSEAluSx3SINE,Alu
chr1121133779CG2.29819E-05SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr244459528GA0.00100PPM1B+FALSE
chr5149823795AT0.00261RPS14-FALSE
chr237431563AG0.00993CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr1145500919CT0.00029NBPF20,NBPF10,LIX1L+FALSE
chr119542305TC0.00085LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr119238562GA3.36880E-06IFFO2-FALSE
chr165693725CT0.00202AK4+FALSE
chr12120899702TA0.00967GATC,SRSF9+,-FALSE
chr145975266AG0.00188MMACHC+TRUEAluSg7SINE,Alu
chr126158908GC0.00181MTFR1L,AUNIP+,-FALSE
chr232533707AG0.00054.FALSEAluSpSINE,Alu
chr116889217GC0.00696NBPF1-FALSEL1MC4SINE,Alu
chr1224621934GC0.00245WDR26-FALSE(GGA)nSINE,Alu
chr1227574182GC0.00014ARNTL2,ARNTL2-AS1+,-FALSE
chr441673604TC0.00580LIMCH1+FALSE
chr9131094270AG0.00686COQ4+TRUEAluSxSINE,Alu
chr177759578AG0.00031AK5+FALSE
chr126143698TA0.00832SEPN1+FALSE
chr16283558AT0.00624ICMT-FALSE
chr1431916462TC0.00059LOC101927124,DTD2+,-FALSEFLAM_CSINE,Alu
chr1144595886GA0.00242NBPF20+FALSEAluJbSINE,Alu
chr197084638AG0.00508ZNF557+TRUEAluJbSINE,Alu
chr12117467580AG0.00064FBXW8+TRUEAluSzSINE,Alu
chr116890630TG0.00147NBPF1-FALSE
chr138280010CT0.00990MTF1-FALSE
chr439550967TC2.19217E-06UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr349396588TC0.00533RHOA-FALSE
chr126143726GT0.00560SEPN1+FALSEAluSxSINE,Alu
chr1945406537TC0.00278TOMM40+FALSE
chr1153920564AG0.00747CRTC2-FALSE
chr13730400TC0.00457CEP104-TRUEAluSx3SINE,Alu
chr7128829066AG0.00816SMO+FALSE
chr116890639CT0.00095NBPF1-FALSE
chr765618870AG0.00097CRCP+TRUEAluSx3SINE,Alu
chr1145293515AG4.09953E-06NBPF20,NBPF10+FALSE
chr1094414146AG0.00911KIF11+FALSE
chr194335333GT0.00258DNTTIP2-FALSE
chr170833400CT0.00224HHLA3+FALSELTR7SINE,Alu
chr1182358196CG0.00929GLUL-FALSE
chr314985983AT6.81677E-14FGD5-AS1-FALSE
chr11661751AG0.00037SLC35E2-FALSE
chr16259433GA0.00522RPL22-FALSEG-richSINE,Alu
chr1719091395CT0.00852.FALSEU3SINE,Alu
chr145976723TC0.00340MMACHC,PRDX1+,-FALSE
chr1476680377TA0.00143.FALSEL1M5SINE,Alu
chr345722396AG0.00231LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr1760522250AG0.00267METTL2A+FALSE
chr1100489571GA1.40531E-05SLC35A3+FALSEAluScSINE,Alu
chr1921366997AG0.00727ZNF431+TRUEAluScSINE,Alu
chr5180682608CA0.00144CTC-338M12.4+FALSE
chr1013234356AT3.19668E-07MCM10+FALSE
chr145280500AG0.00857.FALSEAluSxSINE,Alu
chr1075008797TC0.00824DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr9124094999GT0.00764GSN+FALSE(TG)nSINE,Alu
chr315112495TC0.00030RBSN-TRUEAluSq2SINE,Alu
chr1611931210GT0.00292RSL1D1-FALSE
chr119953130TA0.00595MINOS1,MINOS1-NBL1+FALSE
chr1171501831AG0.00037PRRC2C+FALSE
chr178414329GA0.00922FUBP1-FALSEA-richSINE,Alu
chr791742141TA0.00620CYP51A1-FALSEAluSx3SINE,Alu
chr575469427GA0.00155SV2C+FALSE
chr1765335459TC5.16289E-08PSMD12-TRUEAluSxSINE,Alu
chr2128950515AG0.00208UGGT1+TRUEAluScSINE,Alu
chr146075779AG0.00640NASP+TRUEAluSx4SINE,Alu
chr136067760TC0.00203PSMB2-TRUEAluSzSINE,Alu
chr652267967AC0.00424PAQR8+FALSE
chr16282224TC0.00785ICMT-TRUEAluSzSINE,Alu
chr46676407GC0.00178LOC93622+FALSE
chr3194999352AT0.00482ACAP2-FALSE
chr1423300642CA0.00266MRPL52+FALSEMIRbSINE,Alu
chr3156259348GA0.00899SSR3-FALSEAluSq2SINE,Alu
chr273480136TA0.00281CCT7+FALSE
chr119953131GA0.00486MINOS1,MINOS1-NBL1+FALSE
chr1148577409CA0.00897NBPF15+FALSE
chr116889624TC0.00614NBPF1-TRUE
chr5149363392AG0.00531SLC26A2+TRUEAluJrSINE,Alu
chr115993514CT0.00802.FALSEAluSx4SINE,Alu
chr19163383TC0.00383.FALSEAluSpSINE,Alu
chr4169299528TC0.00745DDX60L-FALSE
chr1075008815TC0.00309DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr1186641127AT0.00546PTGS2-FALSE
chr7131241049GA0.00145PODXL-FALSE(GGCGAC)nSINE,Alu
chr1070277096TC0.00229SLC25A16-FALSEL2cSINE,Alu
chr3113351702AG0.00042.FALSE7SLRNASINE,Alu
chr12303108TC5.78895E-05MORN1-FALSEAluSpSINE,Alu
chr165692499CT0.00930AK4+FALSE(T)nSINE,Alu
chr3128339057AT0.00535RPN1-FALSE(A)nSINE,Alu
chr553841241TA0.00372SNX18+FALSE
chr1205684067TC0.00499NUCKS1-FALSE
chr299812815AG0.00245MRPL30+TRUEAluJbSINE,Alu
chr11126147713CG0.00384FOXRED1+FALSE
chr1167389822CT0.00935POU2F1+FALSE
chr625600772AG0.00269CARMIL1+FALSE
chr127180861CT0.00721ZDHHC18+FALSE
chr1542859922AG0.00731HAUS2+TRUEAluSx1SINE,Alu
chr19160989TC0.00041.FALSEAluJbSINE,Alu
chr2029631557AG0.00159FRG1BP+FALSE
chr2018468339TC0.00062RBBP9-TRUEAluSz6SINE,Alu
chr16283264TC0.00561ICMT-TRUEAluSx3SINE,Alu
chr132373838TG0.00376PTP4A2-FALSE(T)nSINE,Alu
chr17421931TC0.00260VPS53-TRUEAluSxSINE,Alu
chr4165998019TC0.00849TMEM192-TRUEAluSxSINE,Alu
chr2220416942GC0.00100OBSL1-FALSE
chr19200571TC0.00079LINC01002-FALSE
chr2106510201CA0.00638NCK2+FALSE
chr1949472GA2.93477E-10ISG15+FALSE
chr128921019AG0.00030RAB42+TRUEAluSxSINE,Alu
chr1563616883AT0.00036CA12-FALSE
chr128823671TC0.00073PHACTR4+FALSE
chr168940887TG0.00293DEPDC1-FALSEMIRSINE,Alu
chr6138412313AG0.00092PERP-FALSE
chr1145513090AG0.00017NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr146076468AG0.00069NASP+TRUEAluSxSINE,Alu
chr629857589AG0.00280.FALSE
chr128825465AG0.00756PHACTR4+TRUEAluSgSINE,Alu
chr1089005496TG0.00138NUTM2A-AS1-FALSEMSTB1SINE,Alu
chr20309186AG0.00665SOX12+FALSEA-richSINE,Alu
chr1100489297GC0.00669SLC35A3+FALSEAluScSINE,Alu
chr132373854AT0.00096PTP4A2-FALSE
chr11650845GA0.00094CDK11B,CDK11A-FALSE
chr1146647196TC0.00241.FALSETHE1DSINE,Alu
chr1161088583TG0.00822NIT1+FALSE
chr154871874CT1.50809E-06SSBP3-FALSE
chr743679092GC1.19724E-06COA1-FALSE
chr1109818151TC0.00855CELSR2+FALSE
chr11662793TC0.00489SLC35E2-TRUEAluYSINE,Alu
chr1109818159GT0.00036CELSR2+FALSE
chr744841589AG0.00469PPIA+TRUEAluJrSINE,Alu
chr1154128827AT0.00724TPM3-FALSE
chr127107948GA0.00177ARID1A+FALSE
chr272405098CA0.00646EXOC6B-FALSE
chr572801323CA0.00119BTF3+FALSE
chr312625747GA0.00067RAF1-FALSE
chr127202963CT0.00106.FALSEAluSq2SINE,Alu
chr145975574AG0.00299MMACHC+TRUEAluSx4SINE,Alu
chr1213069783AG0.00600FLVCR1+FALSE
chr12124146095AG0.00431GTF2H3+TRUEAluSx4SINE,Alu
chr1110913120CT0.00627SLC16A4-FALSE
chr110520751TC0.00495DFFA-TRUEAluSc8SINE,Alu
chr1144828707GT0.00504NBPF20,NBPF9+FALSE
chr255462751TA0.00613RPS27A+FALSE
chr1773819348TC0.00213UNK+FALSE
chr1220231254TC0.00376RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr287755101CT0.00431LINC00152+FALSE
chr579923843TC0.00229DHFR-TRUEAluSpSINE,Alu
chr237429626AG0.00028CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr120980225GT0.00055DDOST-FALSE
chr128836975AG0.00782SNHG3,RCC1+TRUEAluScSINE,Alu
chr1205686523GT2.43057E-05NUCKS1-FALSE
chr1757279257AG0.00077PRR11+TRUEAluSq2SINE,Alu
chr1591044387TG0.00077IQGAP1+FALSE
chr456291623GT0.00490TMEM165+FALSE
chr19416568CT0.00061SPSB1+FALSE
chr1167396055TA0.00031POU2F1+FALSE
chr116890639CT5.60894E-05NBPF1-FALSE
chr1712915009GA0.00219ELAC2-FALSE
chr1453243411TC0.00028GNPNAT1-TRUEAluSx3SINE,Alu
chr3179117646GA0.00812GNB4-FALSE
chr1539887848GA0.00664THBS1+FALSE
chr116060892CT0.00946PLEKHM2+FALSE
chr1184762498TC0.00834FAM129A-TRUEAluSzSINE,Alu
chr1115275398TG0.00474CSDE1-FALSE
chr1227955296CT3.87648E-07KLHL42+FALSE
chr250147866GA0.00130NRXN1-FALSE(GT)nSINE,Alu
chr142925688TG0.00637PPCS+FALSE
chr21168781CA0.00650SNTG2+FALSE
chr572876776CA0.00875UTP15+FALSE
chr729963082GA0.00118SCRN1-FALSE
chr119545144GT0.00071LOC101927895,EMC1+,-FALSE
chr339453610CT0.00025RPSA+FALSE
chr1114940228CT0.00559TRIM33-FALSE(T)nSINE,Alu
chr1773773311TG0.00474H3F3B-FALSE
chr1942375564AG0.00117.FALSEAluSxSINE,Alu
chr1942375602AG0.00011.FALSEAluSxSINE,Alu
chr1269237020AG0.00150MDM2+TRUE
chr16160958AG0.00967KCNAB2+FALSE
chr1749042206TC0.00030SPAG9-TRUEAluJbSINE,Alu
chr153292875GT8.43181E-07ZYG11B+FALSE
chr152253793CT0.00966OSBPL9+FALSE
chr2178086785CA0.00808HNRNPA3+FALSE
chr1156564726TC0.00995GPATCH4-FALSE
chr185732582GA0.00371BCL10-FALSEAluSz6SINE,Alu
chr5145666114GT0.00766RBM27+FALSE
chr154493197TC0.00489TMEM59-TRUEAluSz6SINE,Alu
chr232535836AG0.00163.FALSEAluJbSINE,Alu
chr132158374TC0.00134COL16A1-FALSE
chr1229762054TA0.00535URB2+FALSE
chr3191111160AG4.43846E-07CCDC50+FALSE
chr323958355CT0.00997NKIRAS1,RPL15+,-FALSE

Differential Expression Gene Analysis