RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr12	98943033	A	G	0.00346	TMPO	+	TRUE	AluSz	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr4	119956116	G	T	0.00442	SYNPO2	+	FALSE
chr5	145506100	G	A	0.00586	LARS	-	FALSE
chr1	1245100	C	T	0.00656	PUSL1	+	FALSE
chr1	10518591	A	T	0.00545		.	FALSE
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr3	172365832	T	G	0.00011	NCEH1	-	FALSE
chr1	1417974	C	T	0.00677	ATAD3B	+	FALSE
chr2	37327670	T	C	5.08697E-08		.	FALSE
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr1	566933	A	G	3.50078E-05		.	FALSE
chr9	137330713	T	G	0.00021	RXRA	+	FALSE
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr2	216903544	T	C	0.00929	PECR	-	TRUE	AluSx3	SINE,Alu
chr11	119533724	C	G	0.00232	NECTIN1	-	FALSE
chr5	96110613	T	A	0.00993	ERAP1	-	FALSE
chr1	16932368	T	A	0.00336	NBPF1	-	FALSE	MLT1F-int	SINE,Alu
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr3	111732608	G	A	2.81327E-08	TAGLN3	+	FALSE
chr4	1205668	C	A	0.00132	CTBP1-AS,CTBP1	+,-	FALSE	(A)n	SINE,Alu
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	33149338	A	G	0.00367	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	9160989	T	C	0.00041		.	FALSE	AluJb	SINE,Alu
chr10	15120275	T	C	0.00387	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr8	11701429	T	C	0.00496	CTSB	-	TRUE	AluSx1	SINE,Alu
chr12	56510702	T	C	0.00052	RPL41	+	FALSE
chr12	72096330	A	G	0.00014	TMEM19	+	TRUE	AluSz6	SINE,Alu
chr1	168220535	A	G	0.00665		.	FALSE	AluSz6	SINE,Alu
chr8	145150065	G	C	0.00585	CYC1	+	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr4	39550967	T	C	2.19217E-06	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	201846627	A	T	0.00571	IPO9	+	FALSE	(CA)n	SINE,Alu
chr6	42060429	T	C	0.00017		.	FALSE	AluSz6	SINE,Alu
chr4	2516791	T	G	4.75740E-05	RNF4	+	FALSE
chr1	149913733	T	C	0.00143	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr5	140240514	A	G	0.00151	PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHA10	+	FALSE	AluY	SINE,Alu
chr2	24225509	A	G	0.00132		.	FALSE	AluSq2	SINE,Alu
chr1	35658260	C	G	0.00477	SFPQ	-	FALSE
chr17	7482018	C	A	9.29146E-05	SENP3-EIF4A1,EIF4A1	+	FALSE
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr16	88709698	C	T	0.00330	CYBA	-	FALSE
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr1	23409538	G	A	0.00292	KDM1A	+	FALSE
chr1	42884086	G	T	0.00040	RIMKLA	+	FALSE
chr1	145511796	T	G	0.00428	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr7	4810530	G	A	0.00236	FOXK1	+	FALSE	(GT)n	SINE,Alu
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr5	290324	T	A	0.00729	PDCD6	+	FALSE
chr2	217366570	A	G	0.00332		.	FALSE	AluSz	SINE,Alu
chr9	115447534	T	C	0.00203	INIP	-	TRUE	AluJb	SINE,Alu
chr3	194999352	A	T	0.00482	ACAP2	-	FALSE
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr2	55516938	A	T	0.00265	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr3	107773064	T	C	0.00421	CD47	-	TRUE	FLAM_A	SINE,Alu
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr5	170837892	C	A	0.00725		.	FALSE
chr8	26492397	C	T	0.00709	DPYSL2	+	FALSE
chr1	11847902	C	A	0.00364	C1orf167,MTHFR	+,-	FALSE
chr1	109476363	A	G	0.00172	GPSM2,CLCC1	+,-	FALSE
chr1	101442569	C	A	0.00567	SLC30A7	+	FALSE
chr1	46075188	C	A	0.00199	NASP	+	FALSE	A-rich	SINE,Alu
chr4	38945834	T	C	0.00287	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr1	85785552	T	C	0.00334	DDAH1	-	FALSE
chr5	145838680	A	G	0.00395	TCERG1	+	FALSE	(GCCCAG)n	SINE,Alu
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr2	176789423	C	A	0.00441	LNPK	-	FALSE	MSTB1	SINE,Alu
chr1	225974614	A	G	0.00209	SRP9	+	TRUE	AluJr	SINE,Alu
chr1	87170493	T	G	0.00345	SH3GLB1	+	FALSE
chr7	128143797	A	G	4.50405E-06		.	FALSE	AluSq2	SINE,Alu
chr3	57743171	C	T	1.04824E-07	SLMAP	+	FALSE
chr1	789187	C	G	5.07459E-05	LINC01128	+	FALSE
chr2	191745655	C	G	0.00163	GLS	+	FALSE
chr1	9161550	G	A	0.00196		.	FALSE
chr7	16823610	T	G	0.00765	TSPAN13	+	FALSE
chr1	173457017	C	T	0.00036	PRDX6	+	FALSE
chr3	40578935	A	G	0.00063	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	16935130	C	T	0.00155	NBPF1	-	FALSE
chr1	89477559	C	T	0.00044	GBP3	-	FALSE
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	31342611	A	C	0.00145	SDC3	-	FALSE
chr1	177977067	A	G	0.00030	LOC730102	-	FALSE
chr1	179042300	C	A	0.00491	FAM20B	+	FALSE
chr2	69688901	T	C	0.00503	AAK1	-	TRUE	AluSq2	SINE,Alu
chr2	101622889	T	A	0.00022	RPL31	+	FALSE
chr3	37366459	C	A	2.94197E-05	GOLGA4	+	FALSE
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr2	73460316	G	T	0.00368	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	10520669	T	C	0.00022	DFFA	-	FALSE	AluSc8	SINE,Alu
chr4	120978603	G	C	0.00042		.	FALSE
chr13	107196415	C	T	0.00285	ARGLU1	-	FALSE	(TTG)n	SINE,Alu
chr4	152025793	T	A	0.00675	RPS3A	+	FALSE
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr12	9848629	A	G	0.00027	CLEC2D	+	FALSE
chr11	124954212	C	A	0.00827	SLC37A2	+	FALSE
chr19	11256626	T	C	1.61091E-07	SPC24	-	TRUE	AluJr4	SINE,Alu
chr18	2804129	G	A	0.00157	SMCHD1	+	FALSE
chr1	6283260	T	C	0.00125	ICMT	-	TRUE	AluSx3	SINE,Alu
chr17	79004271	T	C	0.00200	BAIAP2-AS1	-	FALSE	AluSq2	SINE,Alu
chr17	28575454	A	C	0.00470	BLMH	-	FALSE
chr22	18571474	A	G	1.16198E-07	PEX26	+	TRUE	AluSz	SINE,Alu
chr11	69480680	T	C	0.00252	ORAOV1	-	FALSE	AluSx1	SINE,Alu
chr7	154796233	A	G	0.00545	PAXIP1-AS1	+	TRUE	AluSx3	SINE,Alu
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr2	91843429	G	A	0.00037	LOC654342	-	FALSE
chr5	150647736	G	T	0.00964	GM2A	+	FALSE	AluSc	SINE,Alu
chr2	155555207	A	C	0.00073	KCNJ3	+	FALSE
chr3	57551513	A	G	0.00037	PDE12	+	TRUE	AluSc	SINE,Alu
chr1	94335335	G	T	0.00425	DNTTIP2	-	FALSE
chr1	24288530	A	T	0.00031	PNRC2	+	FALSE
chr7	117825681	A	G	1.90524E-05	LSM8	+	FALSE
chr1	179044110	A	G	5.39593E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr19	46053172	T	C	0.00098	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	204095687	C	A	5.97770E-05	SOX13	+	FALSE
chr5	68788642	G	C	3.71778E-05	OCLN	+	FALSE
chr19	3540006	T	C	3.25622E-05	C19orf71	+	FALSE	AluJo	SINE,Alu
chr12	96661616	A	G	0.00057	ELK3	+	FALSE
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chrX	84532996	T	G	0.00801	POF1B	-	FALSE
chr4	36121337	T	A	0.00065	ARAP2	-	FALSE
chr1	16133987	T	C	0.00830	UQCRHL	-	FALSE
chr1	33149375	A	G	0.00840	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr1	206635245	T	C	0.00238	SRGAP2	+	FALSE
chr1	44035352	C	T	0.00170	PTPRF	+	FALSE
chr1	145293012	G	A	0.00250	NBPF20	+	FALSE
chr1	21904374	A	C	0.00198	ALPL	+	FALSE
chr1	1252687	T	C	0.00459	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr11	94801637	T	C	0.00726	SRSF8	+	FALSE
chr1	145100772	A	G	0.00945	NBPF20,SEC22B	+	TRUE	AluSg4	SINE,Alu
chr14	53242674	T	C	1.74446E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr17	5288078	A	G	0.00081	RABEP1	+	FALSE
chr1	9161218	T	C	0.00581		.	FALSE	AluSx	SINE,Alu
chr9	125609939	A	T	0.00693		.	FALSE
chr1	22854931	C	A	7.08508E-09	ZBTB40	+	FALSE	A-rich	SINE,Alu
chr1	10519064	T	C	0.00515		.	FALSE	AluSx3	SINE,Alu
chr1	21070971	G	A	0.00944	HP1BP3	-	FALSE
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chr1	37945905	A	T	0.00038	ZC3H12A	+	FALSE
chr1	21100779	T	C	0.00086	HP1BP3	-	TRUE	AluJr	SINE,Alu
chr1	10519888	T	C	0.00878		.	FALSE	AluJr	SINE,Alu
chr4	119952955	C	T	0.00278	SYNPO2	+	FALSE
chr2	201842323	T	C	0.00591	FAM126B	-	TRUE	AluJb	SINE,Alu
chr2	242122440	C	A	0.00354	PPP1R7	+	FALSE
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr1	54493197	T	C	0.00489	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr3	98518158	A	T	1.44910E-06	DCBLD2	-	FALSE
chr1	1661751	A	G	0.00037	SLC35E2	-	FALSE
chr16	48386442	A	G	0.00824	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	114443618	A	G	0.00910	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	10518831	T	C	0.00213		.	FALSE	AluSx1	SINE,Alu
chr8	95805071	A	G	1.12730E-06	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr2	37331525	T	C	0.00091		.	FALSE	AluJb	SINE,Alu
chr1	19543352	T	C	0.00098	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	53291425	A	G	0.00517	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	45960851	C	T	0.00299	FYCO1	-	FALSE
chr3	189675270	T	G	0.00039	P3H2	-	FALSE
chr1	40974799	T	C	0.00038	EXO5	+	FALSE
chr1	86852621	A	G	0.00930	ODF2L	-	FALSE
chr1	85786299	T	A	0.00502	DDAH1	-	FALSE
chr1	179042512	A	G	4.06106E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	148003749	T	C	0.00517	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	327407	A	G	0.00752		.	FALSE
chr2	17965390	T	C	0.00713	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	145376020	G	A	0.00067	NBPF20,NBPF10	+	FALSE
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr1	1252184	A	G	0.00778	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr1	3545189	T	G	0.00027	TPRG1L	+	FALSE
chr1	116609185	G	A	0.00187	SLC22A15	+	FALSE
chr1	9989022	A	G	0.00616	LZIC	-	FALSE	L1MB5	SINE,Alu
chr1	2160988	G	A	0.00137	SKI	+	FALSE
chr2	37328082	T	C	0.00243		.	FALSE
chr1	33148118	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr20	18469054	T	C	0.00522	RBBP9	-	TRUE	AluJr	SINE,Alu
chr1	169768080	C	A	0.00980	C1orf112	+	FALSE
chr2	217366499	A	G	0.00063		.	FALSE	AluSz	SINE,Alu
chr2	11426734	T	C	4.76290E-06	ROCK2	-	FALSE
chr3	25777072	C	T	4.38639E-06	NGLY1	-	FALSE	L1MEg	SINE,Alu
chr11	65267608	A	G	0.00038	MALAT1	+	FALSE
chr1	148556753	G	A	0.00272		.	FALSE
chr1	16889624	T	C	0.00614	NBPF1	-	TRUE
chr12	125512507	A	G	0.00276		.	FALSE	AluY	SINE,Alu
chr4	142945451	T	C	0.00585		.	FALSE
chr15	85185045	T	C	0.00210	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr2	85132779	T	G	1.13350E-06	TMSB10	+	FALSE
chr1	1595602	A	G	9.14189E-05	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	160967855	T	C	0.00548	F11R	-	TRUE	AluSp	SINE,Alu
chr6	41567394	T	A	0.00717	FOXP4	+	FALSE
chr1	111721354	G	T	0.00616	CEPT1	+	FALSE
chr3	10192798	A	G	0.00014	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	75883878	T	C	0.00838	MRPL19	+	FALSE	HAL1	SINE,Alu
chr1	180013235	T	G	0.00319	CEP350	+	FALSE
chr1	94351064	A	T	0.00212	GCLM	-	FALSE
chr1	207943188	A	G	0.00263	CD46	+	TRUE	AluSx1	SINE,Alu
chr2	37331546	T	C	0.00694		.	FALSE	AluJb	SINE,Alu
chr20	35520935	T	C	0.00120	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr1	229736656	G	C	0.00793	TAF5L	-	FALSE
chr1	214529740	T	C	0.00375	PTPN14	-	TRUE
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr1	19542250	T	C	0.00015	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	11347152	A	T	0.00401	UBIAD1	+	FALSE
chr1	65897981	G	A	0.00653	LEPR,LEPROT	+	FALSE
chr1	171509327	G	A	0.00110	PRRC2C	+	FALSE
chr18	47920424	A	G	0.00000	SKA1	+	FALSE	MER21C	SINE,Alu
chr2	74333235	C	T	0.00022	TET3	+	FALSE
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr14	61112736	T	G	0.00418	SIX1	-	FALSE	(T)n	SINE,Alu
chr4	17629933	A	G	0.00504		.	FALSE	MER90	SINE,Alu
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	10517300	T	C	0.00113		.	FALSE	AluJr	SINE,Alu
chr7	138740037	G	C	0.00598	ZC3HAV1	-	FALSE
chr2	24225006	A	G	0.00141		.	FALSE	AluSx	SINE,Alu
chr1	32661564	C	T	0.00058	TXLNA	+	FALSE	(T)n	SINE,Alu
chr3	56655865	A	G	0.00970	FAM208A	-	FALSE	(A)n	SINE,Alu
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr2	37330606	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr2	5837878	G	A	7.66453E-07	SOX11	+	FALSE
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr3	176739159	A	C	0.00304	TBL1XR1	-	FALSE
chr6	13788342	T	C	0.00048	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	36770601	G	T	0.00055	THRAP3	+	FALSE	(T)n	SINE,Alu
chr22	38881699	A	T	0.00802	DDX17	-	FALSE	(TA)n	SINE,Alu
chr1	19543456	T	C	0.00386	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr7	128829066	A	G	0.00816	SMO	+	FALSE
chr8	128944721	G	T	0.00074	PVT1	+	FALSE
chr3	197611048	A	G	0.00573		.	FALSE	AluSx1	SINE,Alu
chr3	56763328	T	C	0.00546	ARHGEF3	-	FALSE
chr19	1037986	A	T	0.00379	CNN2	+	FALSE
chr2	174090336	A	C	0.00331	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr10	75632760	C	T	0.00013	CAMK2G	-	FALSE
chr2	99812464	A	G	1.88485E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	160062340	G	A	0.00967	IGSF8	-	FALSE
chr1	36068231	T	C	0.00935	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	36770602	T	G	0.00441	THRAP3	+	FALSE	(T)n	SINE,Alu
chr2	37518045	G	C	0.00342	PRKD3	-	FALSE
chr5	70248476	T	G	0.00273	SMN1,SMN2	+	FALSE	L1MC5a	SINE,Alu
chr1	70728523	A	G	0.00051	ANKRD13C	-	FALSE
chr12	12618715	T	C	0.00714	BORCS5	+	FALSE

RBP	DNAJC2
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR577OVP
Platform	HiSeq
Pubmed ID	32252787

DNAJC2 - Target Gene Network