RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	191097966	T	C	1.34670E-13	CCDC50	+	FALSE
chr16	74698531	T	C	0.00702	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr1	120612168	C	T	0.00607	NOTCH2	-	FALSE
chr6	42856917	A	G	0.00148	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr12	125514120	A	G	0.00232		.	FALSE	(TA)n	SINE,Alu
chr2	87777087	T	C	0.00737	LINC00152	+	FALSE
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr7	6202056	G	A	0.00019	CYTH3	-	FALSE
chr1	9643106	A	G	0.00088		.	FALSE	AluSx	SINE,Alu
chr3	47386059	T	C	9.15846E-06	KLHL18	+	FALSE
chr2	207146629	A	G	0.00434	ZDBF2	+	FALSE
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr1	109475427	T	C	0.00185	GPSM2,CLCC1	+,-	FALSE
chrX	3526615	G	T	0.00820	PRKX	-	FALSE
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr4	170678993	T	C	3.15742E-05	HPF1	-	FALSE
chr2	20401856	T	G	0.00263	SDC1	-	FALSE
chrX	23721422	A	C	0.00160		.	FALSE
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr1	10521130	T	C	0.00860	DFFA	-	TRUE	AluY	SINE,Alu
chr1	145689491	A	G	0.00701	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	145511797	T	G	0.00894	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr1	36282608	G	T	0.00886	AGO4	+	FALSE
chr3	53263333	G	A	0.00329	TKT	-	FALSE
chr1	12071680	A	G	5.54475E-07	MFN2	+	FALSE
chr12	98942885	A	G	1.31269E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr4	89181478	T	C	0.00656	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	65298791	A	T	0.00242	RAVER2	+	FALSE
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	16892907	G	A	0.00244	NBPF1	-	FALSE
chr1	142449	G	A	0.00073		.	FALSE	MIRb	SINE,Alu
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr2	232319613	C	T	0.00022	NCL	-	FALSE
chr1	20977380	T	C	0.00429	PINK1,PINK1-AS	+,-	FALSE
chr14	100762690	T	C	0.00461	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr17	65335454	T	C	9.75664E-07	PSMD12	-	TRUE	AluSx	SINE,Alu
chr8	17089564	T	C	0.00165	CNOT7	-	FALSE
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu
chr4	49591495	G	C	0.00893		.	FALSE
chr4	36121336	T	G	0.00183	ARAP2	-	FALSE
chr8	37717121	C	A	0.00087	RAB11FIP1	-	FALSE
chr12	133298254	A	G	0.00849	PGAM5	+	TRUE	AluSp	SINE,Alu
chr10	77807027	T	C	0.00089	C10orf11	+	FALSE
chr9	125609943	A	G	0.00247		.	FALSE
chr1	9328213	A	G	5.00055E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr3	44790636	T	C	0.00083	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr19	21367088	A	G	0.00018	ZNF431	+	TRUE	AluSc	SINE,Alu
chr7	79848334	G	T	0.00158	GNAI1	+	FALSE
chr1	111721354	G	T	0.00616	CEPT1	+	FALSE
chr2	233199107	C	T	0.00675	DIS3L2	+	FALSE
chr4	109542624	G	A	0.00048	RPL34	+	FALSE	MIRb	SINE,Alu
chr11	75526481	C	A	0.00995	UVRAG	+	FALSE
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	15755248	C	T	0.00405	EFHD2	+	FALSE
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr10	75009921	T	C	5.40286E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr4	17803681	T	C	3.85233E-06	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	144922523	C	T	0.00566	NBPF20,PDE4DIP	+,-	FALSE
chr4	129796173	G	T	1.40481E-05	JADE1	+	FALSE
chr2	37331107	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr1	247353355	G	A	0.00628		.	FALSE
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr1	116609833	G	A	0.00773	SLC22A15	+	FALSE
chr2	183643241	C	A	0.00108	DNAJC10	+	FALSE
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr1	1653046	T	A	0.00217	CDK11B,CDK11A	-	FALSE
chr1	10518616	G	A	0.00379		.	FALSE	AluSx1	SINE,Alu
chr1	45976928	G	A	0.00715	PRDX1	-	FALSE
chr21	33032035	T	A	1.90109E-05	SOD1	+	FALSE
chr2	1652354	G	A	0.00114	PXDN	-	FALSE
chr21	40195059	A	G	0.00817	ETS2	+	FALSE
chr1	110466466	T	C	0.00377	CSF1	+	FALSE
chr1	1255412	C	A	0.00751	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	16893691	C	A	0.00141	NBPF1	-	FALSE
chr1	168220427	A	G	0.00670		.	FALSE	AluSz6	SINE,Alu
chr6	109785887	T	C	7.14632E-06	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr12	56215099	T	A	0.00227	DNAJC14	-	FALSE
chr1	121115958	T	C	0.00860	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr3	10285030	G	A	0.00384	IRAK2	+	FALSE
chr3	10168785	T	C	0.00198	BRK1	+	FALSE
chr12	27955296	C	T	3.87648E-07	KLHL42	+	FALSE
chr1	112170151	A	G	0.00137	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr1	28662186	A	G	0.00774	MED18	+	TRUE	AluSq2	SINE,Alu
chr3	45721827	C	A	0.00142	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr14	75202704	A	G	2.33511E-06	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	86049362	C	A	0.00140	CYR61	+	FALSE
chr2	203922075	A	G	0.00561	NBEAL1	+	FALSE
chr2	191067764	A	T	0.00165	C2orf88	+	FALSE
chr6	13788200	T	C	0.00879	MCUR1	-	TRUE	AluSx	SINE,Alu
chr2	202029999	T	G	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr1	143399181	T	G	0.00832		.	FALSE
chr1	62628606	A	G	0.00027	PATJ	+	TRUE	AluSg4	SINE,Alu
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr3	44791398	T	C	0.00081	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	10518734	T	C	0.00249		.	FALSE	AluSx1	SINE,Alu
chr1	144931392	G	A	0.00286	NBPF20,PDE4DIP	+,-	FALSE
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr5	151041874	A	C	0.00060	SPARC	-	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr12	125511311	A	G	0.00299	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	36032230	C	A	0.00297	NCDN	+	FALSE
chr2	85772407	T	A	0.00232	GGCX	-	FALSE
chr1	153920564	A	G	0.00747	CRTC2	-	FALSE
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr1	145369476	A	G	0.00332	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	16889502	T	C	0.00468	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	114306563	T	A	0.00191	RSBN1	-	FALSE
chr3	14986110	T	C	0.00691	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	109242607	G	A	0.00652	PRPF38B	+	FALSE
chr2	217366570	A	G	0.00332		.	FALSE	AluSz	SINE,Alu
chr7	29962282	G	C	0.00023	SCRN1	-	FALSE
chr3	119212015	G	A	0.00024	POGLUT1	+	FALSE
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr1	36789546	A	G	0.00562	EVA1B	-	FALSE	MIRb	SINE,Alu
chr8	11701343	T	C	0.00280	CTSB	-	TRUE	AluSx1	SINE,Alu
chr2	113287424	T	A	0.00616	TTL	+	FALSE
chr2	128604232	A	T	0.00652	POLR2D	-	FALSE
chr1	89648082	G	A	0.00074	GBP4	-	FALSE	LTR2B	SINE,Alu
chr2	24224000	A	G	0.00464		.	FALSE	AluSp	SINE,Alu
chr5	34906547	T	C	0.00051	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr2	50147866	G	A	0.00130	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	145322843	C	T	0.00271	NBPF20,NBPF10	+	FALSE
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	9629305	A	T	0.00079	ADAM17	-	FALSE
chr1	28564195	T	C	0.00113	ATPIF1	+	FALSE
chr1	179042697	A	G	0.00092	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr4	76568676	T	A	0.00051	G3BP2	-	FALSE
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	1431165	C	T	0.00392	ATAD3B	+	FALSE
chr1	11979814	G	A	0.00041	KIAA2013	-	FALSE
chr1	32799434	C	T	0.00227	MARCKSL1	-	FALSE
chr1	95363042	C	G	0.00110	CNN3	-	FALSE
chr1	19542679	T	C	1.36514E-06	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	179506482	A	G	0.00017	USP13	+	FALSE	MER33	SINE,Alu
chr4	110635486	A	G	0.00021	PLA2G12A	-	FALSE
chr1	145281543	C	T	0.00031	NBPF20,NOTCH2NL	+	FALSE
chr8	11700373	T	C	0.00212	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	142688597	C	T	0.00605		.	FALSE
chr1	10519947	T	C	0.00328		.	FALSE	AluJr	SINE,Alu
chr2	187544222	A	G	0.00411	ITGAV	+	FALSE
chr1	180991777	T	C	0.00629	STX6	-	FALSE
chr4	17802783	T	C	6.83941E-07	DCAF16	-	TRUE	AluSz	SINE,Alu
chr14	19686683	G	A	0.00021	DUXAP10	+	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr1	16534255	C	G	0.00980	ARHGEF19	-	FALSE
chr1	10517688	T	C	0.00630		.	FALSE	AluSx1	SINE,Alu
chr1	33071096	A	G	0.00692	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	36068243	T	C	0.00217	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	6694922	G	C	0.00996	ZNF316	+	FALSE
chr1	569782	T	C	0.00010		.	FALSE
chr2	63272724	T	C	0.00210	EHBP1,LOC100132215	+,-	FALSE
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	17393260	T	C	0.00094	PADI2	-	FALSE
chr1	15990912	T	C	0.00133		.	FALSE	AluSx3	SINE,Alu
chr14	53243545	T	C	3.01634E-08	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr11	75116734	C	A	0.00453	RPS3	+	FALSE
chr1	53291434	A	G	0.00545	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	33148362	A	T	0.00870	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	16717888	G	A	0.00206	SZRD1	+	FALSE
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chr10	77157784	C	T	0.00027	ZNF503	-	FALSE	(T)n	SINE,Alu
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr2	48605828	T	A	0.00650	FOXN2	+	FALSE	(T)n	SINE,Alu
chr1	145509570	A	G	0.00037	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr15	59428230	G	A	0.00891	MYO1E	-	FALSE	MLT1B	SINE,Alu
chr12	102517753	T	C	0.00022	PARPBP	+	FALSE
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	128952006	A	G	0.00076	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr2	206987635	T	C	0.00930		.	FALSE	AluJb	SINE,Alu
chr1	45504720	G	C	0.00759	ZSWIM5	-	FALSE
chr1	59122056	G	C	1.57132E-06	MYSM1	-	FALSE
chr1	197093361	G	A	8.55632E-06	ASPM	-	FALSE
chr1	36067752	T	C	9.44020E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	144614842	C	G	0.00015	NBPF20	+	FALSE
chr3	52800284	T	C	6.08396E-05	NEK4	-	FALSE
chr1	16203172	A	G	8.98827E-07	SPEN	+	FALSE
chr3	44790781	T	C	0.00060	KIAA1143	-	TRUE	AluY	SINE,Alu
chr12	15035081	T	C	0.00951	MGP	-	FALSE
chr1	79109337	G	T	0.00790	IFI44L	+	FALSE	LTR26	SINE,Alu
chr1	209605643	A	C	0.00590	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr5	149829072	G	T	0.00816	RPS14	-	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr6	42855972	A	G	0.00182	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr7	100958270	T	C	0.00087	LOC101927746,IFT22	+,-	FALSE
chr1	16787985	A	G	0.00053		.	FALSE	AluSz	SINE,Alu
chr1	32373854	A	T	0.00096	PTP4A2	-	FALSE
chr3	72425248	T	A	0.00281	RYBP	-	FALSE
chr2	174086940	C	A	0.00047	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr1	1550392	C	T	0.00617		.	FALSE	AluSg	SINE,Alu
chr1	145513031	A	G	0.00705	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr15	93568295	G	A	0.00225	CHD2	+	FALSE
chr1	230415244	T	C	0.00360	GALNT2	+	FALSE
chr19	9673107	T	C	1.71894E-07		.	FALSE	AluSx3	SINE,Alu
chr3	101369192	C	T	0.00014	ZBTB11	-	FALSE
chr1	762109	C	T	0.00026	LINC00115	-	FALSE
chr1	120163248	G	A	0.00711	ZNF697	-	FALSE
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr1	150704486	T	C	0.00947	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	156011444	T	C	0.00483	UBQLN4	-	FALSE

RBP	TIAL1
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR927TSP
Platform	HiSeq
Pubmed ID	32252787

TIAL1 - Target Gene Network