RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	4834606	T	C	0.00647	AJAP1	+	FALSE
chr1	145688663	T	G	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr14	65400786	T	G	0.00077	CHURC1-FNTB,CHURC1	+	FALSE	AluSx	SINE,Alu
chr1	148251875	T	C	0.00436	NBPF8,NBPF14,NBPF9	-	FALSE
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr7	22983890	T	C	0.00097	FAM126A	-	FALSE
chr12	26809316	G	A	0.00150	ITPR2	-	FALSE
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr20	29631604	G	A	0.00045	FRG1BP	+	FALSE
chr1	10519200	T	C	0.00059		.	FALSE	AluSx3	SINE,Alu
chr1	14604	A	G	0.00304	WASH7P	-	FALSE
chr2	198339559	G	T	0.00712	COQ10B	+	FALSE
chr1	68940566	A	C	0.00126	DEPDC1	-	FALSE
chr2	187544223	T	G	0.00254	ITGAV	+	FALSE
chr1	28661656	A	G	0.00012	MED18	+	TRUE	AluSg	SINE,Alu
chr4	9909923	G	A	0.00416	SLC2A9	-	FALSE
chr2	87777087	T	C	0.00737	LINC00152	+	FALSE
chr1	569782	T	C	0.00010		.	FALSE
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr1	19542621	T	C	1.78455E-05	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	146650289	C	T	0.00024	PDIA3P1	+	FALSE
chr2	86850798	A	G	0.00267	RNF103-CHMP3,RNF103	-	FALSE
chr3	100043289	C	T	0.00049	TBC1D23	+	FALSE
chr1	154323557	C	T	0.00018	ATP8B2	+	FALSE
chr3	183900836	G	A	0.00658	AP2M1	+	FALSE
chr1	179042550	A	G	0.00831	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	10520117	T	C	0.00188		.	FALSE	AluSx	SINE,Alu
chr10	13687171	T	C	0.00033	FRMD4A	-	FALSE
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr3	10192720	A	G	0.00110	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	32372387	A	C	0.00757	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	23833607	A	T	0.00831	E2F2	-	FALSE
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr7	75115154	C	T	0.00405	POM121C	-	FALSE
chr20	29631627	T	C	0.00040	FRG1BP	+	FALSE
chr1	145512073	A	G	0.00131	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr17	78091513	G	A	0.00810	GAA	+	FALSE
chr1	92862896	A	G	6.86172E-05		.	FALSE	AluJr	SINE,Alu
chr1	150594611	G	T	0.00329	ENSA	-	FALSE
chr1	59004766	G	T	0.00213	OMA1	-	FALSE
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	20238573	T	C	0.00204	OTUD3	+	FALSE
chr17	43002237	C	A	0.00141	KIF18B	-	FALSE
chr2	73957124	A	G	2.00679E-05	TPRKB	-	FALSE
chr12	98943103	A	G	0.00528	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	23833607	A	T	0.00890	E2F2	-	FALSE
chr7	2278515	T	C	0.00937	MRM2	-	TRUE	AluSx1	SINE,Alu
chr1	16889864	C	A	0.00094	NBPF1	-	FALSE
chr1	21793735	C	G	0.00099	NBPF3	+	FALSE
chr1	109780743	C	A	0.00643	SARS	+	FALSE
chr9	125887702	C	T	0.00019	STRBP	-	FALSE
chr3	56763316	G	A	0.00830	ARHGEF3	-	FALSE
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	159887904	A	T	8.82173E-05	TAGLN2	-	FALSE
chr1	3731959	C	T	0.00089	CEP104	-	FALSE
chr1	26608012	C	A	0.00564	SH3BGRL3	+	FALSE
chr2	9629293	T	G	0.00426	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	36068325	T	C	0.00065	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	113212976	C	T	0.00904	CAPZA1	+	FALSE
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr2	37329307	T	C	0.00201		.	FALSE	AluJr4	SINE,Alu
chr1	160966352	T	C	3.14235E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr5	149823791	G	T	0.00480		.	FALSE
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr1	120163248	G	A	0.00204	ZNF697	-	FALSE
chr1	113212976	C	T	0.00332	CAPZA1	+	FALSE
chr3	49067809	T	A	0.00022	QRICH1	-	FALSE
chr1	3546137	A	C	0.00778	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr3	49315592	T	C	0.00127	USP4	-	FALSE
chr1	168220341	A	G	0.00179		.	FALSE	AluSz6	SINE,Alu
chr1	6282401	T	C	0.00806	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr2	223765491	C	T	0.00689	ACSL3	+	FALSE
chr1	36067925	T	C	0.00397	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	196293764	G	C	0.00392	WDR53	-	FALSE
chr2	31557839	G	T	0.00145	XDH	-	FALSE	AluJr	SINE,Alu
chr1	148932848	A	G	0.00496	LOC645166	+	FALSE
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr1	22854702	C	T	4.66415E-11	ZBTB40	+	FALSE
chr14	75202669	A	G	1.13156E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr1	110912873	T	C	0.00116	SLC16A4	-	FALSE
chr2	71376999	G	A	0.00546	MPHOSPH10	+	FALSE
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr2	70506337	T	C	0.00313	PCYOX1	+	FALSE
chr5	139931634	T	G	6.28154E-05	SRA1	-	FALSE
chr1	65692499	C	T	0.00516	AK4	+	FALSE	(T)n	SINE,Alu
chr12	120898553	A	G	0.00233	GATC	+	TRUE	AluY	SINE,Alu
chr7	38764332	T	C	0.00209	VPS41	-	TRUE	AluSp	SINE,Alu
chr12	1086062	G	T	0.00847	RAD52	-	FALSE	L2	SINE,Alu
chr6	170887693	G	C	0.00045	PDCD2	-	FALSE
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr3	12942851	C	G	0.00013	IQSEC1	-	FALSE
chr1	220871123	A	G	0.00854	C1orf115	+	FALSE
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr4	42022464	C	A	0.00059	SLC30A9	+	FALSE
chr14	90865627	T	C	0.00162	CALM1	+	FALSE
chr1	85113229	A	G	0.00687	SSX2IP	-	FALSE
chr1	19586458	A	G	0.00333	MRTO4	+	TRUE	AluSz	SINE,Alu
chr5	118174735	T	C	0.00046	DTWD2	-	TRUE	AluY	SINE,Alu
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu
chr2	37331107	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr1	209602381	G	A	0.00057	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr1	16889014	C	A	0.00473	NBPF1	-	FALSE
chr2	120980896	T	G	0.00132	TMEM185B	-	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr2	11321778	G	T	0.00402	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr19	57818376	A	G	0.00031		.	FALSE	AluJr	SINE,Alu
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr1	15989141	C	G	0.00677		.	FALSE
chr1	19411087	C	T	0.00226	UBR4	-	FALSE
chr1	156692054	A	T	0.00471	ISG20L2	-	FALSE	AluY	SINE,Alu
chr1	1718810	G	A	5.85228E-05	GNB1	-	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr1	10518797	T	C	0.00421		.	FALSE	AluSx1	SINE,Alu
chr1	10502831	A	G	0.00193	APITD1,APITD1-CORT	+	FALSE
chr1	36522603	A	G	0.00012		.	FALSE	AluSc	SINE,Alu
chr6	114181220	A	G	0.00265	MARCKS	+	FALSE
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr4	189020293	G	A	0.00361	TRIML2	-	FALSE
chr6	107113955	A	G	0.00265	QRSL1	+	TRUE	AluSg	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr1	86049361	A	G	0.00036	CYR61	+	FALSE
chr1	33149443	A	G	0.00897	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	17522430	A	G	0.00684		.	FALSE
chr3	195635455	T	C	0.00158	TNK2	-	FALSE
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu
chr17	1946503	C	G	0.00154	DPH1,OVCA2	+	FALSE
chr1	117945049	G	A	0.00120	MAN1A2	+	FALSE
chr7	6501828	C	A	0.00110	KDELR2	-	FALSE
chr1	9163334	T	C	0.00074		.	FALSE	AluSp	SINE,Alu
chr1	225678910	T	C	2.51322E-05	ENAH	-	TRUE	AluSx1	SINE,Alu
chr3	99515750	A	G	2.61553E-11	MIR548G	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr1	10318652	C	G	0.00047	KIF1B	+	FALSE
chr4	77057501	A	G	0.00547	NUP54	-	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr14	90509587	G	T	0.00203	TDP1	+	FALSE
chr6	109785909	T	C	0.00556	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr1	204525669	A	G	0.00169	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	171751051	A	G	0.00522	METTL13	+	FALSE
chr2	206987229	T	C	0.00743		.	FALSE	AluSx	SINE,Alu
chr2	98264656	T	A	0.00993	COX5B	+	FALSE
chr3	69026314	G	A	0.00881	EOGT	-	FALSE	AluSz6	SINE,Alu
chr1	144931101	G	A	0.00012	NBPF20,PDE4DIP	+,-	FALSE
chr13	21547673	G	A	0.00974	LATS2	-	FALSE	(TG)n	SINE,Alu
chr1	179989742	G	C	0.00019	CEP350	+	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr10	60047611	G	A	0.00855	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr2	24522807	C	T	0.00079	ITSN2	-	FALSE
chr6	114182783	A	G	0.00442	MARCKS	+	FALSE
chr1	36067760	T	C	0.00203	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	144595943	A	G	0.00050	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	206579936	A	G	0.00747	SRGAP2	+	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr6	158505088	A	G	0.00083	SYNJ2	+	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr1	204524842	A	G	0.00044	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	161088583	T	G	0.00745	NIT1	+	FALSE
chr1	10517653	T	C	0.00776		.	FALSE	AluSx1	SINE,Alu
chr8	26435509	T	C	0.00121	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr1	53291435	A	G	0.00044	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr19	46052975	T	C	0.00652	OPA3	-	TRUE	AluSz6	SINE,Alu
chrX	77083548	T	C	0.00205	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	11979815	A	C	0.00274	KIAA2013	-	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr1	10517635	T	C	0.00523		.	FALSE	AluSx1	SINE,Alu
chr1	40537922	A	G	0.00686	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr6	17557416	G	T	0.00885	CAP2	+	FALSE
chr1	144815953	A	G	0.00348	NBPF20,NBPF9	+	FALSE
chr1	144053567	C	T	0.00037		.	FALSE
chr4	145031951	T	A	0.00377	GYPA	-	FALSE	(TG)n	SINE,Alu
chr9	103064530	G	A	0.00036	TEX10	-	FALSE
chr13	52952575	G	A	0.00030	THSD1	-	FALSE
chr1	79126336	C	G	1.94494E-06	IFI44	+	FALSE
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr1	75171751	T	C	0.00563	CRYZ	-	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr8	145159712	A	G	0.00402	MAF1	+	FALSE
chr20	25428646	A	G	9.98122E-05	GINS1	+	TRUE	AluJb	SINE,Alu
chr2	110842200	C	A	0.00131	MALL	-	FALSE
chr1	165877666	T	C	0.00327	UCK2	+	FALSE	(T)n	SINE,Alu
chr17	42876808	T	C	0.00147	GJC1	-	TRUE	AluSz6	SINE,Alu
chr1	46076543	A	G	0.00989	NASP	+	TRUE	AluSx	SINE,Alu
chr17	65334725	T	C	2.56338E-07	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	109884775	T	G	0.00026	SORT1	-	FALSE
chr2	224622277	T	C	0.00138	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr14	95572111	A	C	0.00409	DICER1	-	FALSE
chr2	174090320	T	A	0.00174	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr2	61315734	A	G	0.00396	KIAA1841	+	TRUE	AluSg	SINE,Alu
chr3	156259229	T	C	1.62025E-06	SSR3	-	TRUE	AluSq2	SINE,Alu
chr5	125961810	A	G	3.92353E-06	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr1	931939	G	A	0.00428		.	FALSE
chr1	146650289	C	T	0.00736	PDIA3P1	+	FALSE
chr14	75202705	A	G	0.00017	FCF1	+	TRUE	AluSc	SINE,Alu
chr2	202029998	T	A	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr5	40832552	G	T	1.14652E-07	RPL37	-	FALSE
chr14	50361170	C	T	0.00096	ARF6	+	FALSE	(T)n	SINE,Alu
chr1	10520532	T	C	0.00011		.	FALSE	AluSx1	SINE,Alu
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr1	143186597	G	A	0.00644	LOC102723769	-	FALSE
chr1	144053661	T	G	0.00232		.	FALSE
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr5	133956668	G	A	0.00419	SAR1B	-	FALSE
chr7	64023371	T	C	0.00824	ZNF680	-	FALSE
chr1	46165437	T	C	0.00090	IPP	-	TRUE	FRAM	SINE,Alu
chr1	19071752	T	C	0.00503	PAX7	+	FALSE
chr2	85548074	T	C	0.00428	TGOLN2	-	FALSE
chr6	114181223	A	G	0.00365	MARCKS	+	FALSE
chr2	37328034	T	C	0.00046		.	FALSE
chr1	89649522	T	C	0.00358	GBP4	-	TRUE	AluJb	SINE,Alu
chr2	37327670	T	C	5.08697E-08		.	FALSE
chr1	145369589	T	C	0.00128	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr3	170021210	C	A	0.00015	PRKCI	+	FALSE
chr2	1652354	G	A	0.00114	PXDN	-	FALSE
chr5	95130802	A	T	0.00123	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr1	46662492	G	A	9.93078E-05	POMGNT1	-	FALSE
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr3	49714225	T	C	0.00023	APEH	+	FALSE
chr14	75202372	A	G	8.84130E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr14	53243434	T	C	0.00421	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	6282237	T	C	0.00395	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	217366897	A	G	0.00440		.	FALSE	AluSz6	SINE,Alu
chr1	2336210	C	T	0.00206	RER1	+	FALSE
chr1	17735266	G	A	0.00471	RCC2	-	FALSE
chr12	133298349	A	G	0.00000	PGAM5	+	TRUE	AluSp	SINE,Alu
chr19	50410816	G	T	0.00050	IL4I1,NUP62	-	FALSE	AluSz	SINE,Alu
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	15993603	G	A	0.00103		.	FALSE	AluSx4	SINE,Alu
chr5	115428334	G	T	0.00265	COMMD10	+	FALSE
chr1	46828700	A	G	0.00805	NSUN4	+	FALSE
chr1	149581854	C	A	0.00175	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr5	171533782	T	C	0.00039	STK10	-	FALSE
chr3	65341374	T	A	0.00029	MAGI1	-	FALSE
chr12	32532505	G	A	0.00385		.	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	154987526	C	T	0.00043	ZBTB7B	+	FALSE
chr12	7074517	C	T	0.00369	PHB2	-	FALSE
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr7	17384354	A	G	0.00908	AHR	+	TRUE	AluSx	SINE,Alu
chr1	6257826	T	C	0.00560	RPL22	-	FALSE
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chrM	10307	A	C	0.00046		.	FALSE
chr1	160966353	T	C	0.00011	F11R	-	TRUE	AluSg	SINE,Alu
chr14	75202857	A	G	2.23354E-05	FCF1	+	TRUE	AluSx	SINE,Alu
chr2	178406764	C	T	0.00416	AGPS	+	FALSE
chr1	46075715	A	G	0.00842	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	1597356	G	C	0.00995	CDK11B,SLC35E2B	-	FALSE
chr1	36068369	T	C	5.31121E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr12	98943202	A	G	6.48893E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	120163007	G	A	0.00573	ZNF697	-	FALSE
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE
chr4	71683841	T	C	8.62096E-05	GRSF1	-	TRUE	AluSz	SINE,Alu
chr3	196079305	T	C	0.00161		.	FALSE	AluSx	SINE,Alu
chrX	2825114	T	C	0.00738	ARSD	-	TRUE	AluSx1	SINE,Alu

RBP	DDX3X
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR637JLM
Platform	HiSeq
Pubmed ID	32252787

DDX3X - Target Gene Network