RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr16	74698531	T	C	0.00702	RFWD3	-	TRUE	AluSx3	SINE,Alu
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr1	19542410	T	C	0.00270	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	99813020	A	G	0.00015	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chrX	150573750	A	T	0.00887	VMA21	+	FALSE
chr5	7878179	C	T	0.00014	MTRR	+	FALSE
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr8	25272425	C	T	0.00605	DOCK5	+	FALSE
chr7	102016322	A	G	0.00223	LOC100289561,LOC100630923	+	FALSE
chr1	145689028	A	G	9.93195E-07	NBPF20,NBPF10	+	TRUE	AluSc8	SINE,Alu
chr1	120612163	C	A	0.00812	NOTCH2	-	FALSE
chr1	10518052	T	C	0.00179		.	FALSE	AluJr	SINE,Alu
chr1	114940227	T	C	0.00852	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	144053664	A	C	0.00050		.	FALSE
chr17	65334758	T	C	1.31160E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	45975740	C	G	0.00096	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr5	36143392	C	T	0.00151	LMBRD2	-	FALSE
chr1	44072018	C	T	0.00783	PTPRF	+	FALSE
chr1	36522603	A	G	0.00012		.	FALSE	AluSc	SINE,Alu
chr6	138413269	A	G	0.00743	PERP	-	FALSE
chr1	19545147	T	G	0.00510	LOC101927895,EMC1	+,-	FALSE
chr1	70717293	G	A	0.00716	SRSF11	+	FALSE
chr1	155582104	T	A	0.00099	MSTO1	+	FALSE
chr3	15113042	C	T	4.09809E-05	RBSN	-	FALSE
chr1	206566948	G	A	0.00879	SRGAP2	+	FALSE
chr1	45975266	A	G	0.00345	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	168220489	A	G	0.00126		.	FALSE	AluSz6	SINE,Alu
chr7	94297293	G	T	0.00573	PEG10	+	FALSE
chr1	109818162	T	C	0.00316	CELSR2	+	FALSE
chr2	183643905	A	T	0.00841	DNAJC10	+	FALSE
chr12	27848053	A	T	0.00090	PPFIBP1	+	FALSE
chr1	93307479	C	A	0.00019	FAM69A,RPL5	+,-	FALSE
chr1	1309464	C	T	1.11022E-16	AURKAIP1	-	FALSE
chr3	136573440	A	G	0.00038	NCK1-AS1,SLC35G2	+,-	FALSE
chr1	23631625	A	G	0.00536	HNRNPR	-	FALSE	UCON44	SINE,Alu
chr2	97494866	C	T	0.00069	CNNM3	+	FALSE
chr4	3076659	A	C	0.00401	HTT	+	FALSE	(CAG)n	SINE,Alu
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr6	74134075	T	C	0.00018		.	FALSE	AluY	SINE,Alu
chr1	108113839	T	C	0.00027	VAV3	-	FALSE
chr1	15993013	G	A	1.16652E-10		.	FALSE
chr1	33149256	A	G	0.00010	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr1	100654813	T	C	0.00352	DBT	-	TRUE	AluSz	SINE,Alu
chr6	42981526	C	G	0.00129	MEA1	-	FALSE
chr3	65341374	T	A	0.00029	MAGI1	-	FALSE
chr2	36706788	C	G	0.00481	CRIM1	+	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr1	40759231	A	G	0.00168	ZMPSTE24	+	FALSE
chr3	98515569	C	T	3.10862E-15	DCBLD2	-	FALSE
chr17	37006214	T	C	0.00706		.	FALSE	AluSx	SINE,Alu
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr1	9643195	A	G	0.00294		.	FALSE	AluSx	SINE,Alu
chr1	214638296	G	A	3.68085E-08	PTPN14	-	FALSE
chr1	19981865	A	G	0.00213	MINOS1-NBL1,NBL1	+	FALSE
chr1	143464946	T	C	0.00109		.	FALSE
chr19	4428790	A	T	0.00000	CHAF1A	+	FALSE
chr18	212601	C	A	0.00189	USP14	+	FALSE	AluSz	SINE,Alu
chr2	128064446	G	T	0.00652	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	54563156	A	G	3.59804E-06	TCEANC2	+	FALSE
chr17	57279167	A	G	6.96573E-05	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	16889866	G	A	0.00995	NBPF1	-	FALSE
chr9	131872857	C	G	0.00151	CRAT	-	FALSE
chr19	42375627	A	G	0.00058		.	FALSE	AluSx	SINE,Alu
chr1	19543361	A	T	0.00076	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	37230734	C	T	0.00025	HEATR5B	-	FALSE
chr1	40537937	A	C	0.00091	CAP1	+	FALSE	(A)n	SINE,Alu
chr17	57279281	A	G	0.00918	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	46612340	G	T	0.00094	EPAS1	+	FALSE
chr1	201438096	G	T	1.87636E-05	PHLDA3	-	FALSE
chr1	16112795	A	G	1.78234E-05	FBLIM1	+	FALSE
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr1	168218574	A	G	0.00898		.	FALSE	AluSz	SINE,Alu
chr1	149913727	T	C	0.00721	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	10521254	T	C	2.63330E-05	DFFA	-	TRUE	AluY	SINE,Alu
chr5	41917694	T	C	0.00784	C5orf51	+	FALSE
chr17	65335445	T	C	0.00084	PSMD12	-	TRUE	AluSx	SINE,Alu
chr14	50053315	G	A	0.00150		.	FALSE	7SLRNA	SINE,Alu
chr1	1597423	C	T	2.12697E-10	CDK11B,SLC35E2B	-	FALSE
chr1	16891365	G	A	0.00475	NBPF1	-	FALSE
chr1	109865630	C	T	0.00647	SORT1	-	FALSE
chr14	50792961	G	A	0.00547		.	FALSE	AluSx	SINE,Alu
chr1	118502087	C	T	0.00585	WDR3,SPAG17	+,-	FALSE
chrX	16782911	A	G	0.00051		.	FALSE	AluJb	SINE,Alu
chr1	61922437	G	T	0.00359	NFIA	+	FALSE
chr1	19953129	T	A	0.00934	MINOS1,MINOS1-NBL1	+	FALSE
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chrM	10307	A	C	0.00046		.	FALSE
chr2	113334178	A	T	0.00654	POLR1B	+	FALSE	L1MA10	SINE,Alu
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr16	23682631	C	T	0.00960	DCTN5	+	FALSE
chr1	205111761	A	C	0.00497	DSTYK	-	FALSE
chr1	145511796	T	G	0.00173	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr3	44791406	T	C	0.00598	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	16952481	A	G	0.00093	CROCCP2	-	FALSE
chr1	179042482	A	G	0.00079	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	86049363	C	T	0.00064	CYR61	+	FALSE
chr2	128602366	T	C	0.00236		.	FALSE	AluSq2	SINE,Alu
chr17	909317	G	A	0.00766	ABR	-	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr1	38326547	C	T	0.00212	INPP5B	-	FALSE	AluJr	SINE,Alu
chr22	18572728	A	G	0.00050	PEX26	+	TRUE	AluYf1	SINE,Alu
chr21	34728113	A	G	0.00531	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr3	169988286	C	T	0.00029	PRKCI	+	FALSE
chr1	183218868	T	G	0.00091	NMNAT2	-	FALSE
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr1	144053661	T	G	0.00232		.	FALSE
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr1	109465174	A	C	0.00234	GPSM2	+	FALSE
chr5	125961463	A	G	0.00323	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr4	170017406	A	T	0.00534	SH3RF1	-	FALSE
chr1	148556087	G	C	0.00106		.	FALSE
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	65330637	C	T	0.00047	JAK1	-	FALSE
chr1	10517313	T	C	0.00015		.	FALSE	AluJr	SINE,Alu
chr15	35272171	T	C	0.00183	ZNF770	-	FALSE
chr1	36067677	T	C	5.01583E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr12	27574427	A	G	7.32829E-06	ARNTL2,ARNTL2-AS1	+,-	FALSE	AluSz	SINE,Alu
chr3	150261002	C	T	0.00044	SERP1	-	FALSE
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr1	10520888	C	T	0.00960	DFFA	-	FALSE
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr4	17803568	T	C	0.00044	DCAF16	-	TRUE	AluY	SINE,Alu
chr15	40462780	G	A	0.00251	BUB1B	+	FALSE
chr1	93811476	G	C	0.00663		.	FALSE
chr5	87566384	A	T	0.00584	TMEM161B-AS1	+	FALSE
chr1	168215575	G	A	0.00688	ANKRD36BP1	-	FALSE
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr2	61369944	T	C	0.00024	LOC339803	-	TRUE	AluSx	SINE,Alu
chr18	61565062	C	G	0.00207	SERPINB2	+	FALSE
chr1	9161203	T	C	0.00235		.	FALSE	AluSx	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr19	39433140	G	T	0.00260	FBXO17	-	FALSE	AluJb	SINE,Alu
chr20	18468351	T	C	0.00169	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr12	54526562	A	T	0.00119	LOC400043	+	FALSE	L2a	SINE,Alu
chr6	52442880	G	T	5.05556E-08	TRAM2-AS1	+	FALSE
chr1	101444071	G	A	0.00963	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr1	10596341	C	T	0.00552	PEX14	+	FALSE
chr1	145323668	G	C	0.00241	NBPF20,NBPF10	+	FALSE
chr12	98942665	A	G	1.31028E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	75671215	C	T	0.00019	SLC44A5	-	FALSE
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	234542410	C	A	0.00832	TARBP1	-	FALSE
chr1	77759578	A	G	0.00492	AK5	+	FALSE
chr1	25655853	A	G	0.00147	RSRP1,RHD	+,-	FALSE	AluSz	SINE,Alu
chr1	44035352	C	T	0.00170	PTPRF	+	FALSE
chr1	179042482	A	G	1.77761E-07	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr17	78294253	A	G	0.00031	RNF213	+	TRUE	AluSp	SINE,Alu
chr17	3512398	T	C	0.00709	SHPK,TRPV1	-	TRUE	AluSx	SINE,Alu
chr19	13054924	A	C	0.00982	CALR	+	FALSE
chr1	143189476	A	G	0.00160	LOC102723769	-	FALSE
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr1	145688983	A	G	0.00101	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr3	52289298	G	T	0.00059	WDR82	-	FALSE
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr2	38522141	G	T	0.00109	ATL2	-	FALSE
chr1	89225976	T	C	0.00586	PKN2	+	FALSE
chr1	1498747	T	C	0.00847	SSU72	-	TRUE	AluSg7	SINE,Alu
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr1	153914500	G	A	3.11507E-05	DENND4B	-	FALSE
chr5	118175329	T	C	2.47285E-05	DTWD2	-	TRUE	AluJr	SINE,Alu
chr1	11084105	T	A	0.00116	TARDBP	+	FALSE
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr5	1574319	T	A	0.00158	SDHAP3	-	FALSE
chr8	30643547	T	A	0.00748	PPP2CB	-	FALSE
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr1	70718278	C	G	0.00663		.	FALSE
chr1	237065326	C	T	0.00376	MTR	+	FALSE
chr3	33907915	A	G	3.74419E-09	PDCD6IP	+	FALSE
chr1	220970028	A	G	0.00444	MARC1	+	FALSE
chr12	66516911	A	T	0.00067	LLPH	-	FALSE
chr10	71993094	T	G	0.00078	PPA1	-	FALSE
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr4	39550715	T	C	0.00995	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr17	79838088	T	C	6.81311E-05		.	FALSE	AluSx	SINE,Alu
chr7	105162562	G	C	0.00096	PUS7	-	FALSE
chr1	28825465	A	G	0.00756	PHACTR4	+	TRUE	AluSg	SINE,Alu
chrX	77083845	T	C	0.00102	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	10520764	T	C	0.00542	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	46075192	A	C	0.00045	NASP	+	FALSE	A-rich	SINE,Alu
chr5	44826677	G	T	0.00941		.	FALSE	(T)n	SINE,Alu
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr8	144662353	G	A	0.00951	EEF1D	-	FALSE
chr1	16841972	G	A	1.76809E-05		.	FALSE	MER41E	SINE,Alu
chr1	202993198	C	A	0.00754	TMEM183A	+	FALSE
chr6	114181220	A	G	0.00265	MARCKS	+	FALSE
chr1	6583701	T	C	0.00029	NOL9	-	FALSE
chr2	176792535	T	G	0.00211	LNPK	-	FALSE
chr5	64964627	T	C	0.00998	SGTB	-	TRUE	AluSx1	SINE,Alu
chr4	2516791	T	G	4.75740E-05	RNF4	+	FALSE
chr1	9427842	A	G	0.00923	SPSB1	+	FALSE
chr8	144940327	G	A	0.00989	EPPK1	-	FALSE
chr1	10520058	T	C	0.00907		.	FALSE	AluSx	SINE,Alu
chr16	29707549	A	G	0.00025	QPRT	+	TRUE	AluJr	SINE,Alu
chr1	151092839	A	G	0.00135	GABPB2	+	TRUE	AluSp	SINE,Alu
chr2	130807905	G	T	0.00634	FAR2P1	-	FALSE
chr17	19091395	C	T	0.00852		.	FALSE	U3	SINE,Alu
chr1	16932429	C	G	0.00076	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr19	16661541	T	C	0.00120	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr3	58308214	G	A	0.00113		.	FALSE	LTR49	SINE,Alu
chr1	46159823	T	A	0.00823	TMEM69	+	FALSE
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr1	145693060	A	G	2.60299E-05	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr1	31732599	T	G	0.00827	SNRNP40	-	FALSE
chr2	152334349	A	G	0.00171		.	FALSE	AluSq	SINE,Alu
chr3	115528809	T	G	0.00087	LSAMP	-	FALSE
chr8	98739208	A	G	0.00686	MTDH	+	TRUE	AluSg4	SINE,Alu
chr2	37327670	T	C	5.08697E-08		.	FALSE
chr16	10626624	T	C	0.00334	EMP2	-	FALSE	(T)n	SINE,Alu
chr1	1344893	A	G	7.94078E-08		.	FALSE	AluSg	SINE,Alu
chr2	38971641	T	A	0.00071	SRSF7	-	FALSE
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	100489992	A	G	0.00938	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	20978516	T	C	0.00774	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr1	46075189	C	A	0.00597	NASP	+	FALSE	A-rich	SINE,Alu
chr1	148556726	G	T	0.00023		.	FALSE
chr1	1595048	T	C	0.00399	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	27205632	T	C	0.00471		.	FALSE	FLAM_A	SINE,Alu
chr9	140709880	C	T	0.00178	EHMT1	+	FALSE
chr3	150262004	A	T	0.00167	SERP1	-	FALSE
chr3	57126615	T	C	0.00460	IL17RD	-	FALSE	AluY	SINE,Alu
chr1	1251631	T	C	0.00256	CPSF3L	-	TRUE	AluSz	SINE,Alu
chr1	17393889	A	G	0.00390	PADI2	-	FALSE
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	33148216	A	G	0.00321	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	179116220	T	C	0.00343	GNB4	-	TRUE	AluSz6	SINE,Alu
chr9	19376249	G	T	5.55883E-05		.	FALSE
chr1	33219771	G	C	0.00256	KIAA1522	+	FALSE
chr19	19793709	A	G	0.00700	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr20	25428588	A	G	0.00068	GINS1	+	TRUE	AluJb	SINE,Alu
chr2	37328082	T	C	1.18454E-08		.	FALSE
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr3	57199227	A	C	0.00638	IL17RD	-	FALSE

RBP	PHF6
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR681SMT
Platform	HiSeq
Pubmed ID	32252787

PHF6 - Target Gene Network