RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	156044222	G	T	0.00037	MEX3A	-	FALSE	(T)n	SINE,Alu
chr19	45406538	C	G	0.00119	TOMM40	+	FALSE
chr1	33149495	A	G	0.00652	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	93307479	C	A	0.00085	FAM69A,RPL5	+,-	FALSE
chr1	53289686	A	G	0.00460	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr3	101546847	G	A	0.00665	NXPE3,NFKBIZ	+	FALSE
chr4	17845943	C	G	0.00000	NCAPG,LCORL	+,-	FALSE
chr1	36642420	T	C	9.55653E-06	MAP7D1	+	FALSE
chr1	19542456	T	C	0.00135	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	120612037	T	G	0.00044	NOTCH2	-	FALSE	(CGC)n	SINE,Alu
chr19	39669597	T	C	0.00610	PAK4	+	FALSE	(TG)n	SINE,Alu
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr1	183105705	G	A	0.00074	LAMC1	+	FALSE
chr16	48386442	A	G	0.00964	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	24796069	A	C	0.00403	NIPAL3	+	FALSE
chr3	40577761	A	G	0.00701	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr1	10517623	T	C	0.00664		.	FALSE	AluSx1	SINE,Alu
chr1	46075187	A	C	0.00024	NASP	+	FALSE	A-rich	SINE,Alu
chr14	19686329	G	A	0.00117	DUXAP10	+	FALSE
chr1	36067811	T	C	0.00439	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	45722287	A	G	0.00197	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr5	126113463	A	C	0.00392	LMNB1	+	FALSE	(CGACGCG)n	SINE,Alu
chr1	118166877	C	T	0.00980	FAM46C	+	FALSE
chr3	142776250	A	C	0.00926	U2SURP	+	FALSE
chr2	201774185	T	C	6.12175E-05		.	FALSE	AluSz	SINE,Alu
chr3	124948049	T	C	0.00709	ZNF148	-	TRUE
chr17	62541203	G	A	0.00660	SMURF2	-	FALSE
chr4	152025793	T	A	0.00675	RPS3A	+	FALSE
chr1	205686520	A	G	0.00980	NUCKS1	-	FALSE
chr1	94995491	C	T	0.00036	F3	-	FALSE	AluSx	SINE,Alu
chr11	68523504	T	C	0.00029	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	145284138	G	A	0.00382	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr1	33149443	A	G	0.00013	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr6	26411987	T	C	0.00405	BTN3A1	+	FALSE
chr2	11426734	T	C	4.76290E-06	ROCK2	-	FALSE
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	145689537	A	G	0.00028	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr19	2426238	T	G	0.00129	TIMM13,TMPRSS9	+,-	FALSE
chr4	100869246	T	C	0.00444	H2AFZ	-	FALSE
chr1	19543282	T	C	0.00020	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	10143199	A	G	0.00496	FANCD2,FANCD2OS	+,-	FALSE	AluSc8	SINE,Alu
chr1	28835201	C	T	0.00371	SNHG3,RCC1,SNORA73B	+	FALSE	U17	SINE,Alu
chr2	37329369	T	C	0.00010		.	FALSE	AluJr4	SINE,Alu
chr1	9330740	G	C	0.00077	H6PD	+	FALSE
chr1	89447856	A	G	0.00218	KYAT3,RBMXL1	-	FALSE
chr1	17199309	G	A	0.00398	LOC440570	+	FALSE
chr1	36067760	T	C	0.00044	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr1	207942456	A	G	0.00322	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	10364612	A	C	0.00860	KIF1B	+	FALSE
chr5	40830050	T	C	0.00042		.	FALSE	AluSp	SINE,Alu
chr1	19542455	T	C	0.00506	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	38971643	T	A	0.00013	SRSF7	-	FALSE
chr1	16890071	G	A	0.00246	NBPF1	-	FALSE
chr1	9788153	G	A	0.00198	PIK3CD	+	FALSE	AluSx	SINE,Alu
chr1	27250642	A	G	0.00020	NUDC	+	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr4	13602231	G	A	0.00646	BOD1L1	-	FALSE
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	195411498	G	A	0.00722	SDHAP2	+	FALSE
chr15	41590943	A	G	0.00561	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr5	31554098	G	T	2.66454E-15	C5orf22	+	FALSE
chr1	33149376	A	G	0.00424	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	176728458	G	T	0.00901	RAB24	-	FALSE
chr1	10519946	T	C	0.00033		.	FALSE	AluJr	SINE,Alu
chr1	67874689	T	C	3.52759E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chrX	16781687	A	G	0.00298		.	FALSE	AluSx1	SINE,Alu
chr1	168220479	A	G	0.00113		.	FALSE	AluSz6	SINE,Alu
chr1	6259658	G	C	0.00012	RPL22	-	FALSE
chr1	53291420	A	G	0.00213	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr14	53243394	T	C	0.00957	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr1	2434523	T	C	9.26798E-05	PLCH2	+	FALSE
chr4	186081538	T	A	0.00077	CFAP97	-	FALSE
chr2	37331841	C	T	0.00179		.	FALSE	L1MC4	SINE,Alu
chr1	26774224	A	G	0.00100	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr5	178986987	C	T	0.00651	RUFY1	+	FALSE
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr9	139417333	G	A	0.00463	NOTCH1	-	FALSE
chr1	6582221	T	C	6.47537E-05	NOL9	-	TRUE	AluSq4	SINE,Alu
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr1	53289688	A	G	0.00069	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	36923643	G	C	0.00409	MRPS15	-	FALSE
chr2	206981835	T	C	0.00047		.	FALSE	AluJb	SINE,Alu
chr12	56510697	G	A	0.00055	RPL41	+	FALSE
chr4	2940098	T	C	0.00034	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	33148736	A	G	2.35913E-09	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr1	110201699	T	C	0.00513	GSTM4	+	FALSE
chr16	23478710	C	A	0.00335	GGA2	-	FALSE	(AC)n	SINE,Alu
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	89518173	T	A	0.00465	GBP1	-	FALSE
chr1	31732603	A	C	0.00164	SNRNP40	-	FALSE
chr6	3154871	A	C	7.50591E-06	TUBB2A	-	FALSE
chr1	74672926	T	A	0.00159	FPGT-TNNI3K,FPGT	+	FALSE	Kanga1d	SINE,Alu
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr2	174090331	A	C	0.00901	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	90048248	C	T	3.54659E-05	LRRC8B	+	FALSE
chr3	136667405	T	C	0.00190	NCK1	+	FALSE
chrX	24095325	A	G	7.48023E-10	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr4	2841802	A	G	0.00016	SH3BP2	+	TRUE	AluJb	SINE,Alu
chr19	58356540	A	G	0.00019	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr12	125514120	A	G	0.00232		.	FALSE	(TA)n	SINE,Alu
chr1	16841561	G	A	0.00025		.	FALSE
chr16	80636806	T	G	0.00926	CDYL2	-	FALSE
chr19	53999034	A	G	0.00282		.	FALSE	AluSq2	SINE,Alu
chr1	61921200	A	T	0.00177	NFIA	+	FALSE
chr3	112720117	G	T	0.00125	GTPBP8	+	FALSE
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr14	76671382	A	G	0.00777	GPATCH2L	+	TRUE	AluJr4	SINE,Alu
chr1	10520532	T	C	0.00150		.	FALSE	AluSx1	SINE,Alu
chr1	15993514	C	T	0.00802		.	FALSE	AluSx4	SINE,Alu
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr1	87379497	A	G	0.00067	SEP15	-	FALSE
chr3	120113403	T	G	0.00364	FSTL1	-	FALSE
chr1	28800380	C	A	0.00709	PHACTR4	+	FALSE
chr8	11172477	C	T	0.00805	MTMR9	+	FALSE
chr1	45476889	C	G	0.00969	HECTD3	-	FALSE
chr1	53289873	A	G	0.00013	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	45640374	C	A	0.00578	SRBD1	-	FALSE
chr1	53288862	A	G	0.00799	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	52498139	A	G	0.00193	TXNDC12,KTI12	-	FALSE
chr1	16933583	T	C	0.00050	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr2	37429737	A	G	0.00549	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr4	1066073	T	A	0.00387	RNF212	-	FALSE	L1MC1	SINE,Alu
chr2	224622242	T	C	0.00873	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr21	40195059	A	G	0.00817	ETS2	+	FALSE
chr1	10517314	T	C	0.00073		.	FALSE	AluJr	SINE,Alu
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr6	42855962	A	G	0.00045	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	220232138	T	C	0.00011	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr8	104343686	G	A	0.00031	FZD6	+	FALSE
chr2	99812465	A	G	0.00367	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	204082516	G	A	0.00094	NBEAL1	+	FALSE
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr2	61152521	G	A	0.00134	REL	+	FALSE
chr9	115936771	C	T	1.86133E-10	FKBP15	-	FALSE
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr1	326539	A	G	0.00719		.	FALSE
chr1	10521172	T	C	0.00244	DFFA	-	TRUE	AluY	SINE,Alu
chr2	85546320	G	T	0.00749	TGOLN2	-	FALSE	AluSc	SINE,Alu
chr13	52952680	G	A	7.53266E-06	THSD1	-	FALSE
chr1	145281656	A	T	0.00768	NBPF20,NOTCH2NL	+	FALSE
chr1	145293515	A	G	4.09953E-06	NBPF20,NBPF10	+	FALSE
chr1	19232211	G	A	0.00552	IFFO2	-	FALSE	(GT)n	SINE,Alu
chr1	160965379	T	C	0.00010	F11R	-	TRUE	AluSc	SINE,Alu
chr2	37328012	T	C	6.47624E-05		.	FALSE
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	118071289	A	G	0.00023		.	FALSE
chr1	145689568	A	G	8.25649E-05	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	179506721	G	C	0.00018	USP13	+	FALSE
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr2	20192696	G	A	0.00400	MATN3,LOC101928222	+,-	FALSE
chr9	21331486	T	G	0.00675	KLHL9	-	FALSE
chr6	42856959	A	G	6.63353E-07	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr11	769459	T	C	0.00082	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr3	196044973	C	T	0.00985	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr1	26158906	C	A	0.00362	MTFR1L,AUNIP	+,-	FALSE
chr1	158065762	C	T	0.00310	KIRREL	+	FALSE
chr4	120979673	T	C	0.00074		.	FALSE	AluSg	SINE,Alu
chr2	232319593	A	C	0.00348	NCL	-	FALSE	A-rich	SINE,Alu
chr7	6442892	C	A	0.00675	RAC1	+	FALSE
chr1	180247477	C	T	0.00060		.	FALSE
chr14	50361171	C	T	0.00017	ARF6	+	FALSE	(T)n	SINE,Alu
chr1	931935	T	C	0.00913		.	FALSE
chr1	53291408	A	G	0.00931	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr1	115313038	G	A	0.00144	SIKE1	-	FALSE
chr2	24223142	A	G	0.00524	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr4	2841551	A	G	0.00258	SH3BP2	+	TRUE	AluJr	SINE,Alu
chr1	145511962	A	G	0.00187	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	182637840	C	T	1.61172E-05	ATP11B	+	FALSE
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr1	40145850	G	C	0.00035	HPCAL4	-	FALSE
chr7	30634661	C	G	3.93145E-07	GARS	+	FALSE
chr1	1650657	C	G	0.00379	CDK11B,CDK11A	-	FALSE
chr2	99216531	A	G	0.00049	COA5	-	FALSE	MLT1K	SINE,Alu
chr20	18468351	T	C	0.00169	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr2	10198113	C	A	0.00893	CYS1	-	FALSE
chr5	290174	C	T	0.00083	PDCD6	+	FALSE
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr1	1650787	T	C	0.00590	CDK11B,CDK11A	-	FALSE
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr9	127711532	T	C	0.00018	SCAI	-	TRUE	AluSp	SINE,Alu
chr1	36068231	T	C	0.00121	PSMB2	-	TRUE	AluSc	SINE,Alu
chr8	144940792	G	C	9.20360E-05	EPPK1	-	FALSE
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr1	112266790	C	T	0.00892	FAM212B	-	FALSE
chr3	69038160	G	A	0.00557	EOGT	-	FALSE
chr7	129472333	C	T	0.00670	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr1	145500917	G	C	0.00930	NBPF20,NBPF10,LIX1L	+	FALSE
chr3	45125417	G	A	0.00024	CDCP1	-	FALSE	AluJb	SINE,Alu
chr2	101638888	A	G	0.00127	TBC1D8	-	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr1	144598726	A	C	0.00325	NBPF20	+	FALSE
chr13	50273970	C	T	1.77946E-05	KPNA3	-	FALSE
chr1	15818065	T	C	0.00372	CASP9	-	TRUE	AluJb	SINE,Alu
chr2	128620373	C	T	0.00553	AMMECR1L	-	FALSE
chr7	100958270	T	C	0.00087	LOC101927746,IFT22	+,-	FALSE
chr3	100083426	C	T	0.00908	TOMM70	-	FALSE	FAM	SINE,Alu
chr2	75120159	C	T	0.00180	HK2	+	FALSE
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr12	98943201	A	G	9.51066E-07	TMPO	+	TRUE	AluSz	SINE,Alu
chr2	74333231	C	T	0.00073	TET3	+	FALSE
chr1	138156	G	T	0.00140	LOC729737	-	FALSE
chr3	196078364	G	A	6.64958E-05		.	FALSE	GA-rich	SINE,Alu
chr6	42856131	A	G	0.00062	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr9	102977295	C	T	3.70755E-05	INVS	+	FALSE	HERVL40-int	SINE,Alu
chr7	98015394	G	C	0.00118	BAIAP2L1	-	FALSE
chr3	107773064	T	C	0.00421	CD47	-	TRUE	FLAM_A	SINE,Alu
chr3	15112612	T	C	0.00634	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	46662492	G	A	9.93078E-05	POMGNT1	-	FALSE
chr2	26616356	A	G	0.00030	EPT1	+	FALSE
chr2	74375276	A	C	0.00328	BOLA3-AS1	+	FALSE

RBP	PARN
Knock-Method	shRNA
RBP Family	CAF1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR306IOF
Platform	HiSeq
Pubmed ID	32252787

PARN - Target Gene Network