RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	48632596	A	G	0.00666		.	FALSE
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr5	96110613	T	A	0.00993	ERAP1	-	FALSE
chr1	53289686	A	G	0.00029	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	162268108	G	A	0.00091	PSMD14	+	FALSE
chr10	104417853	T	A	0.00393	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr15	90820104	A	G	4.84304E-05		.	FALSE	AluY	SINE,Alu
chr1	145512073	A	G	0.00131	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	85775237	T	C	6.42894E-05	GGCX	-	TRUE	AluSx4	SINE,Alu
chr17	38974612	T	C	0.00963	KRT10	-	FALSE
chr1	28826128	A	G	0.00060	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr5	150827303	T	G	0.00718	SLC36A1	+	FALSE
chr10	117823568	T	A	0.00483	GFRA1	-	FALSE	(ATC)n	SINE,Alu
chr1	176176230	G	A	0.00091	RFWD2	-	FALSE
chr3	93780109	G	C	8.09346E-05	DHFR2	-	FALSE
chr17	4856580	T	C	0.00922	ENO3	+	FALSE
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr2	61277463	A	G	0.00826	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr12	98943162	A	G	5.01524E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr3	23958355	C	T	0.00997	NKIRAS1,RPL15	+,-	FALSE
chr3	179506482	A	G	0.00017	USP13	+	FALSE	MER33	SINE,Alu
chr2	200792307	G	A	0.00596	C2orf69	+	FALSE
chr1	900717	C	T	0.00661	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	53288924	A	G	0.00099	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr4	2940098	T	C	0.00034	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr5	125962169	A	G	0.00013	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	150190851	G	T	0.00339	ANP32E	-	FALSE
chr1	145512078	A	G	0.00907	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	9328213	A	G	0.00404	H6PD	+	TRUE	AluJr	SINE,Alu
chr6	166824706	A	T	0.00048	RPS6KA2	-	FALSE	(T)n	SINE,Alu
chr12	98942808	A	G	0.00019	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	8045340	C	A	0.00056	PARK7	+	FALSE
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr4	38016395	T	G	0.00537	TBC1D1	+	FALSE
chr3	47036756	C	G	0.00091	NBEAL2	+	FALSE
chr1	67874689	T	C	0.00146	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr4	9909923	G	A	0.00416	SLC2A9	-	FALSE
chr2	37327590	T	C	0.00681		.	FALSE
chr4	843695	A	G	0.00602	GAK	-	FALSE
chr1	40539208	A	T	2.90582E-07	PPT1	-	FALSE
chr1	35319605	A	C	0.00226	SMIM12	-	FALSE	AluSg	SINE,Alu
chr1	17394775	G	A	0.00103	PADI2	-	FALSE
chr1	101354038	T	C	0.00565	EXTL2	-	TRUE	L1MB2	SINE,Alu
chr1	53289686	A	G	0.00063	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	144932220	G	T	0.00449	NBPF20,PDE4DIP	+,-	FALSE
chr1	6583457	T	C	0.00233	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	10517313	T	C	0.00015		.	FALSE	AluJr	SINE,Alu
chr12	133298025	A	G	6.18330E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr4	57326315	A	G	0.00281	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	19542456	T	C	0.00135	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	16921146	T	C	0.00353	NBPF1	-	FALSE
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr2	73301687	G	A	0.00618	RAB11FIP5	-	FALSE
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr2	217123958	T	C	0.00012	MARCH4	-	FALSE
chr1	179044206	A	G	0.00458	FAM20B	+	TRUE	AluSx	SINE,Alu
chr2	37331745	T	C	0.00097		.	FALSE	AluJb	SINE,Alu
chr1	24289896	T	G	0.00051	PNRC2	+	FALSE
chr1	201846635	A	T	0.00293	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	6283305	T	C	0.00129	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr5	31553968	T	C	0.00555	C5orf22	+	FALSE
chrX	23721458	T	A	0.00413		.	FALSE	AluSc8	SINE,Alu
chr12	125269489	C	T	0.00817	SCARB1	-	FALSE
chr2	206984202	T	C	0.00849		.	FALSE	AluSx	SINE,Alu
chr2	96915238	T	C	2.48142E-05		.	FALSE	AluJr	SINE,Alu
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr3	63996262	C	T	0.00273	PSMD6-AS2,PSMD6	+,-	FALSE
chr2	220308581	A	C	0.00029	SPEG	+	FALSE
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr2	85776765	T	C	0.00426	GGCX	-	TRUE	AluSz6	SINE,Alu
chr1	16529004	A	C	3.00007E-07	ARHGEF19	-	FALSE
chr1	91486839	T	C	0.00329	ZNF644	-	FALSE
chr1	27876482	C	A	0.00687	AHDC1	-	FALSE
chr5	115165591	T	C	0.00407	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	38174366	G	T	0.00879	CDCA8	+	FALSE
chr1	35650162	C	A	0.00106	SFPQ	-	FALSE
chr2	206986314	T	C	0.00936		.	FALSE	AluSz	SINE,Alu
chr1	201438095	C	G	3.49736E-05	PHLDA3	-	FALSE
chr1	148595665	A	G	0.00378	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr5	35058804	A	T	0.00836	PRLR	-	FALSE
chr1	10520378	T	C	0.00145		.	FALSE	AluSx1	SINE,Alu
chr4	56291623	G	T	0.00490	TMEM165	+	FALSE
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr1	40361783	G	C	0.00023	MYCL	-	FALSE
chr2	10567337	G	C	0.00940	HPCAL1	+	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr8	41399823	A	G	0.00172	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr16	74655591	T	G	0.00652	RFWD3	-	FALSE	AluSx	SINE,Alu
chr1	33147947	A	G	0.00345	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	53679610	G	A	0.00217	CPT2	+	FALSE	AluSz	SINE,Alu
chr8	27661035	T	A	0.00314	ESCO2	+	FALSE	A-rich	SINE,Alu
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr19	19793729	A	G	0.00124	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr15	40954864	A	G	0.00636	KNL1	+	TRUE
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr1	3731959	C	T	0.00089	CEP104	-	FALSE
chr1	36386884	C	T	0.00024	AGO1	+	FALSE
chr1	19934679	G	A	0.00354	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr3	45721874	A	G	0.00314	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr16	81744038	T	C	6.34278E-05	CMIP	+	FALSE	(CCGC)n	SINE,Alu
chr1	114306372	A	G	0.00443	RSBN1	-	FALSE
chr1	10520684	T	C	0.00125	DFFA	-	TRUE	AluSc8	SINE,Alu
chr5	77655330	T	C	0.00050	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr5	118173627	T	C	0.00075	DTWD2	-	TRUE
chr2	132481526	C	A	0.00040	C2orf27A	+	FALSE
chr19	39433138	G	A	0.00276	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr1	9161011	T	C	0.00190		.	FALSE	AluJb	SINE,Alu
chr14	103372464	C	A	0.00577	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr2	37331207	T	C	0.00745		.	FALSE	AluSx1	SINE,Alu
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr16	8902411	A	G	0.00357	PMM2	+	FALSE
chr3	189713205	T	C	4.97145E-05	P3H2	-	FALSE
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	81571878	A	T	8.61300E-05	RPS23	-	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr1	32372360	C	T	0.00697	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr2	191067763	A	T	0.00038	C2orf88	+	FALSE
chr1	36068231	T	C	0.00508	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	79923361	T	C	0.00050	DHFR	-	TRUE	AluJr	SINE,Alu
chr19	1457883	C	G	2.74690E-05	APC2	+	FALSE
chr2	75887834	T	C	0.00024	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr1	11084345	C	T	0.00558	TARDBP	+	FALSE
chr1	16932783	G	C	0.00843	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	9161011	T	C	7.97270E-05		.	FALSE	AluJb	SINE,Alu
chr15	90375419	T	C	0.00521	C15orf38-AP3S2,AP3S2	-	TRUE	AluJr	SINE,Alu
chr1	220231254	T	C	0.00974	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	15899630	T	C	0.00082	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr1	203771852	G	T	0.00883	ZC3H11A	+	FALSE	(T)n	SINE,Alu
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr3	139086995	C	A	0.00743	COPB2	-	FALSE
chr17	73885274	T	C	0.00143	TRIM65	-	TRUE	AluSg	SINE,Alu
chr1	155032752	A	G	0.00347	LOC100505666,ADAM15	+,-	FALSE
chr4	169911112	C	A	0.00142	CBR4	-	FALSE
chr1	32508397	T	C	0.00166	KHDRBS1	+	FALSE
chr1	161088583	T	G	0.00822	NIT1	+	FALSE
chr12	53435276	T	G	4.45732E-05	EIF4B	+	FALSE
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr2	37331221	T	C	1.68149E-05		.	FALSE	AluSx1	SINE,Alu
chr1	120839683	G	A	0.00875	FAM72B	+	FALSE
chr7	107788257	C	T	0.00068	NRCAM	-	FALSE
chr3	191114309	A	T	1.88175E-05	CCDC50	+	FALSE
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr1	51820588	G	A	0.00807	EPS15	-	FALSE
chr12	100562932	G	T	0.00079	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr1	10520153	T	C	0.00398		.	FALSE	AluSx	SINE,Alu
chr1	10520117	T	C	0.00078		.	FALSE	AluSx	SINE,Alu
chr1	28261657	C	T	0.00327	SMPDL3B	+	FALSE
chr17	43248581	C	T	0.00012	LOC105371795	-	FALSE
chr2	17965699	C	T	0.00497	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	33149363	A	G	0.00237	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr1	94335333	G	T	0.00258	DNTTIP2	-	FALSE
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr6	116600810	G	A	0.00028	DSE,TSPYL1	+,-	FALSE
chr1	16890130	A	C	0.00728	NBPF1	-	FALSE
chr5	122165512	C	A	0.00276	SNX2	+	FALSE
chr1	33148211	A	G	9.09328E-07	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr5	40830050	T	C	0.00042		.	FALSE	AluSp	SINE,Alu
chr1	54691921	G	A	0.00909	SSBP3	-	FALSE
chr3	73115126	A	T	0.00228	PPP4R2	+	FALSE
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr1	45452227	G	C	0.00279	EIF2B3	-	FALSE
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr5	34906156	T	C	2.52494E-05	RAD1	-	TRUE	AluSx1	SINE,Alu
chr1	214524044	T	C	0.00242	PTPN14	-	TRUE	AluSx	SINE,Alu
chr3	15113885	T	C	0.00094	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	229795330	T	C	0.00334	URB2	+	FALSE
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr1	45975269	A	G	0.00827	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	63881552	C	T	0.00293	ALG6	+	FALSE
chr1	45975345	A	G	0.00614	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	89447715	T	G	0.00137	KYAT3,RBMXL1	-	FALSE
chr1	16200163	A	G	0.00078	SPEN	+	FALSE
chr1	327441	A	G	1.08612E-09		.	FALSE
chr1	2125114	C	T	1.71441E-12	FAAP20	-	FALSE
chr1	205719141	C	T	0.00021	NUCKS1	-	FALSE
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr4	103809241	A	T	0.00073	CISD2,SLC9B1	+,-	FALSE
chr2	25962254	A	T	0.00375	ASXL2	-	FALSE
chr1	27205359	T	C	0.00301		.	FALSE	AluSc	SINE,Alu
chr1	145284138	G	A	0.00382	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr1	209605640	A	C	0.00581	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr1	217688165	C	A	0.00343	GPATCH2	-	FALSE
chr7	100804140	C	T	0.00377	AP1S1	+	FALSE
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr17	49041866	T	C	0.00153	SPAG9	-	TRUE	AluSx	SINE,Alu
chr6	29912348	A	G	0.00429		.	FALSE
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr1	163309219	A	T	0.00023	NUF2	+	FALSE
chr11	65404866	T	G	0.00664	PCNX3	+	FALSE	(T)n	SINE,Alu

RBP	NONO
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR398HXV
Platform	HiSeq
Pubmed ID	32252787

NONO - Target Gene Network