Dataset Overview
RBP
TFIP11
Knock-Method
shRNA
RBP Family
G-patch
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR573UBF
Platform
HiSeq
Pubmed ID
32252787
TFIP11 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of TFIP11
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
8.64
12.57
0.64046
1.72212E-05
7.89593E-05
A1CF
29.82
15.95
-0.65559
6.53553E-12
8.10897E-11
A2M
1827.0
2887.05
0.83719
9.67225E-21
2.79670E-19
AACS
14.57
9.96
-0.41401
0.00021
0.00076
AADAT
7.03
4.57
-0.48586
0.00217
0.00607
AAGAB
10.84
14.1
0.50230
2.32502E-05
0.00010
AAK1
3.2
4.42
0.43577
0.00612
0.01497
AAMP
132.44
144.2
0.21074
0.02071
0.04334
AAR2
20.83
23.1
0.23523
0.03414
0.06676
AARS
50.74
40.0
-0.32693
0.00393
0.01021
Showing 1 to 10 of 7,158 entries
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Function Analysis of Target Genes of TFIP11
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AASS
121722841_121722945_121721553_121721649_121726065_121726233
0.00105
0.401
DataSet_01_267
View details
ACSM2B
20586743_20586829_20575990_20576175_20587528_20587606
0.00463
-0.04
DataSet_01_267
View details
AFMID
76200736_76200822_76198783_76198832_76200908_76200981
0.00187
-0.215
DataSet_01_267
View details
AFP
74313330_74313393_74309063_74309161_74315051_74315184
0.00001
0.018
DataSet_01_267
View details
AFP
74320952_74321007_74319481_74319614_74321347_74321891
0.00222
-0.006
DataSet_01_267
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ALB
74270837_74270890_74270003_74270123_74272345_74272478
0.00004
-0.026
DataSet_01_267
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ALB
74270837_74271056_74270003_74270123_74272345_74272478
0.00217
-0.034
DataSet_01_267
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ALDOA
30077145_30077248_30075781_30075826_30078554_30078654
0.00000
0.164
DataSet_01_267
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ALDOA
30077196_30077248_30076059_30076105_30078554_30078687
0.00089
0.02
DataSet_01_267
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AMBRA1
46534276_46534363_46529740_46529920_46563494_46564948
0.00955
0.191
DataSet_01_267
View details
Showing 1 to 10 of 164 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ADD1
2877622_2877837_2883624_2883787_2845583_2845751
0.00695
0.124
DataSet_01_267
View details
AFP
74313178_74313308_74313330_74313393_74310709_74310839
0.00572
0.069
DataSet_01_267
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AGT
230841678_230841946_230845740_230846599_230839938_230840083
0.00004
0.246
DataSet_01_267
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AHSG
186336300_186336426_186337645_186337729_186334975_186335139
0.00222
-0.005
DataSet_01_267
View details
BFAR
14738130_14738466_14743660_14743830_14726671_14726875
0.00043
0.247
DataSet_01_267
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BIVM
103483914_103484047_103486815_103486902_103474414_103474509
0.00081
0.53
DataSet_01_267
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BPIFB2
31608133_31608169_31608347_31608393_31607385_31607556
0.00009
0.11
DataSet_01_267
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BPIFB2
31596353_31596489_31598829_31598923_31595405_31595566
0.00090
0.009
DataSet_01_267
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C1orf43
154184933_154185100_154186368_154186422_154179195_154180124
0.00184
0.179
DataSet_01_267
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C6orf62
24709004_24709139_24714545_24714668_24706151_24706490
0.00143
0.141
DataSet_01_267
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Showing 1 to 10 of 93 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
FKBP10
39974633_39974854_39974633_39974779_39975461_39975651
0.00346
0.07
DataSet_01_267
View details
MERTK
112779938_112780082_112779938_112779971_112785927_112786870
0.00032
0.071
DataSet_01_267
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NOP56
2636579_2636860_2636579_2636680_2637046_2637195
0.00000
-0.198
DataSet_01_267
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P4HA2
131533898_131534133_131534013_131534133_131531104_131531173
0.00019
-0.138
DataSet_01_267
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PPAN
10221620_10221760_10221620_10221698_10224308_10225414
0.00066
0.267
DataSet_01_267
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RREB1
7108212_7108297_7108212_7108293_7176887_7177006
0.00063
-0.203
DataSet_01_267
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TTC3
38445550_38445783_38445550_38445773_38459546_38459701
0.00196
0.122
DataSet_01_267
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Showing 1 to 7 of 7 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AP1G2
24034329_24034551_24034329_24034408_24034814_24034910
0.00091
-0.128
DataSet_01_267
View details
CCDC51
48475197_48475386_48475197_48475281_48476226_48476420
0.00023
0.267
DataSet_01_267
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CEP76
12700956_12701124_12700956_12701112_12702484_12702755
0.00319
0.237
DataSet_01_267
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COPA
160275222_160275388_160275222_160275361_160275477_160275563
0.00731
0.037
DataSet_01_267
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CYLD
50783459_50784113_50783486_50784113_50776672_50776752
0.00277
0.079
DataSet_01_267
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DDX42
61882403_61882535_61882430_61882535_61877827_61877977
0.00660
-0.037
DataSet_01_267
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FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00957
-0.014
DataSet_01_267
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FN1
216236631_216237098_216236631_216236738_216238044_216238134
0.00304
-0.005
DataSet_01_267
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HNRNPR
23644975_23645190_23644975_23645181_23648020_23648156
0.00778
0.067
DataSet_01_267
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MORF4L2
102933426_102933579_102933426_102933528_102939608_102939657
0.00180
-0.149
DataSet_01_267
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Showing 1 to 10 of 17 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTB
5567911_5569031_5567911_5568350_5568791_5569031
0.00000
0.016
DataSet_01_267
View details
ACTB
5567634_5568350_5567634_5567816_5567911_5568350
0.00002
0.011
DataSet_01_267
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BHLHE40
5021646_5022093_5021646_5021716_5021985_5022093
0.00651
0.021
DataSet_01_267
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DDX39A
14520114_14520457_14520114_14520259_14520347_14520457
0.00111
0.235
DataSet_01_267
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DDX39A
14523362_14524036_14523362_14523490_14523824_14524036
0.00518
0.161
DataSet_01_267
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DDX3Y
15026795_15027139_15026795_15026894_15026978_15027139
0.00599
-0.068
DataSet_01_267
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ENO2
7025834_7026271_7025834_7025893_7026201_7026271
0.00817
-0.076
DataSet_01_267
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FTH1
61734783_61735103_61734783_61734843_61734929_61735103
0.00002
0.054
DataSet_01_267
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MOV10
113240908_113242432_113240908_113241411_113242306_113242432
0.00945
-0.141
DataSet_01_267
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NISCH
52511589_52512298_52511589_52511658_52512112_52512298
0.00542
-0.037
DataSet_01_267
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Showing 1 to 10 of 14 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
144930940
T
C
0.00181
NBPF20,PDE4DIP
+,-
FALSE
chr1
47142538
G
A
0.00870
EFCAB14-AS1,EFCAB14
+,-
FALSE
chr1
156518379
G
A
0.00498
IQGAP3
-
FALSE
chr1
148251009
T
C
0.00065
NBPF8,NBPF14,NBPF9
-
TRUE
chr1
40537922
A
G
0.00686
CAP1
+
FALSE
(A)n
SINE,Alu
chr1
1663957
C
T
0.00345
SLC35E2
-
FALSE
chr1
19543349
T
C
0.00090
LOC101927895,EMC1
+,-
FALSE
AluJb
SINE,Alu
chr1
46828657
C
T
0.00378
NSUN4
+
FALSE
chr1
153587256
A
T
0.00013
S100A14
-
FALSE
chr1
144881463
C
T
0.00147
NBPF20,PDE4DIP
+,-
FALSE
Showing 1 to 10 of 371 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression