Dataset Overview
RBPDDX19B
Knock-MethodshRNA
RBP FamilyDEAD
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR312SFA
PlatformHiSeq
Pubmed ID32252787

DDX19B - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of DDX19B
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of DDX19B


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr730616247TC0.00887LOC401320-FALSETHE1BSINE,Alu
chr1118408218CA0.00857GDAP2-FALSE
chr2217366192TA0.00067.FALSE
chr119934930TC0.00026MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr19910357AT0.00056CTNNBIP1-FALSE
chrX77083116TC0.00658MAGT1-TRUEAluSgSINE,Alu
chr375475670AC0.00506FAM86DP-FALSE
chr127202901TC0.00224.FALSEAluSq2SINE,Alu
chrM5265CA0.00026.FALSE
chr720178434TC0.00178MACC1,LOC101927668-TRUEAluYSINE,Alu
chr1145512078AG0.00099NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr140213234AG0.00146PPIE+TRUEAluSx3SINE,Alu
chr764435677GA0.00366ZNF117-FALSE
chr1168218522AG0.00073.FALSEAluSzSINE,Alu
chr1160966301TC8.33949E-06F11R-TRUEAluSgSINE,Alu
chr110517306TC0.00176.FALSEAluJrSINE,Alu
chr129446554CA0.00682EPB41,TMEM200B+,-FALSE
chr1169101273TG0.00522ATP1B1+FALSE(T)nSINE,Alu
chr178029102GA0.00086ZZZ3-FALSE
chr110520888CT0.00960DFFA-FALSE
chr120976032TC9.95086E-05PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr29630248GT0.00764ADAM17-FALSE
chr1918476232AG0.00189PGPEP1+TRUEAluJbSINE,Alu
chr1590819655AG0.00174.FALSEAluSxSINE,Alu
chr5150578574AG0.00447CCDC69-FALSE
chr643738977CT0.00088VEGFA+FALSE
chr124288530AT0.00031PNRC2+FALSE
chr116576295GA0.00139FBXO42-FALSEA-richSINE,Alu
chr1119574587CT0.00901WARS2-FALSE
chr146830430GA0.00023NSUN4+FALSELTR108a_MamSINE,Alu
chr2227662565AC0.00028IRS1-FALSE
chr76500726AT0.00560KDELR2-FALSE
chr1778921108GA0.00065RPTOR+FALSE
chr136068231TC0.00935PSMB2-TRUEAluScSINE,Alu
chr1778226862AC0.00590SLC26A11+FALSE
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu
chr1146650091CA0.00361PDIA3P1+FALSE
chr286252049TC0.00271POLR1A-FALSEAluSq2SINE,Alu
chr2206983255TC0.00246.FALSEAluJbSINE,Alu
chr7137561077CA0.00995CREB3L2-FALSE
chr631657413TC0.00767.FALSE
chr634249357TA0.00373.FALSE
chr116893686GC0.00386NBPF1-FALSE
chr2179368982AC0.00530MIR548N,PLEKHA3+FALSE
chr357542173CT0.00020PDE12+FALSE
chr228639641CG0.00431.FALSE
chr286249961TC0.00368LOC90784-TRUEAluJrSINE,Alu
chr13416449CA0.00748MEGF6-FALSE
chr1145689491AG0.00701NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr2127826533AG0.00942BIN1-FALSE
chr1179042905AG0.00034FAM20B+TRUE
chr4144475125TG0.00133SMARCA5+FALSE
chr3150261569TG0.00173SERP1-FALSE
chr299812988AG0.00700MRPL30+TRUEAluJbSINE,Alu
chr47764501TA5.61153E-09AFAP1,AFAP1-AS1+,-FALSE
chr14102547384AT0.00403HSP90AA1-FALSE
chrX54587254AG0.00019GNL3L+TRUEAluSq2SINE,Alu
chr5133956668GA0.00419SAR1B-FALSE
chr1773885939TC0.00612TRIM65-TRUEAluJrSINE,Alu
chr1757279171AG0.00063PRR11+TRUEAluSq2SINE,Alu
chr136068294TC0.00321PSMB2-TRUEAluScSINE,Alu
chr1179042555AG0.00922FAM20B+TRUEAluSx1SINE,Alu
chr345722047AG0.00085LIMD1,LIMD1-AS1+,-FALSEAluJbSINE,Alu
chrX77083007TC0.00371MAGT1-TRUEAluSgSINE,Alu
chr128825418AG0.00046PHACTR4+TRUEAluSgSINE,Alu
chr1204521580AG0.00469MDM4+TRUEAluSgSINE,Alu
chr9136209404GA0.00361MED22-FALSE(CAGGG)nSINE,Alu
chr193827995CT0.00236DR1+FALSE
chr595222277CT0.00599ELL2-FALSE
chr19325676CT9.85088E-06H6PD+FALSE
chr1749041897TC4.67707E-06SPAG9-TRUEAluSxSINE,Alu
chr344791343TC0.00220KIAA1143-FALSEAluJrSINE,Alu
chr120224152GA0.00581OTUD3+FALSE
chr1145290818CG0.00931NBPF20+FALSE
chr166100450GA0.00528LEPR+FALSE
chr46677063GA0.00087LOC93622+FALSE
chr147141718TC0.00978EFCAB14-AS1,EFCAB14+,-FALSE
chr315113655TC0.00025RBSN-TRUEAluSz6SINE,Alu
chr138275432GT0.00057MTF1-FALSE
chr16651456AG0.00614KLHL21-FALSE
chr1942376702AG6.18708E-08.FALSEAluSpSINE,Alu
chr133148045AG0.00264SYNC,RBBP4+,-FALSEAluSxSINE,Alu
chr237331736TC0.00165.FALSEAluJbSINE,Alu
chr1154557184GA0.00558ADAR-FALSEA-richSINE,Alu
chr2217123958TC0.00012MARCH4-FALSE
chr217942775TA0.00367GEN1+FALSE
chr110517300TC0.00113.FALSEAluJrSINE,Alu
chr116889217GC0.00696NBPF1-FALSEL1MC4SINE,Alu
chr5118731273AC0.00843.FALSE
chr124933701AG0.00372NCMAP+TRUEAluJrSINE,Alu
chr81730500AG3.50527E-05CLN8+TRUEAluSx1SINE,Alu
chr133149376AG0.00519SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr634254565AT0.00617.FALSE(A)nSINE,Alu
chr119542433TC0.00076LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1145112414TC0.00079NBPF20,SEC22B+FALSE
chr1183105534TC0.00125LAMC1+FALSE
chr1949608GA0.00435ISG15+FALSE
chr116893813AG0.00255NBPF1-FALSE
chr116921146TC0.00835NBPF1-FALSE
chr11337733AC0.00017MRPL20-FALSE
chr6126661502GT0.00873CENPW+FALSE
chr199672312TC4.30163E-05.FALSEAluJrSINE,Alu
chr1120612194CG0.00091NOTCH2-FALSE(CCG)nSINE,Alu
chr1327407AG3.55459E-07.FALSE
chr897506373CG0.00579SDC2+FALSE(CCCCGAG)nSINE,Alu
chr1117530188AG0.00199PTGFRN+FALSE
chr1114227223GA0.00699MAGI3+FALSE
chr121101369TC0.00244HP1BP3-TRUEAluScSINE,Alu
chr1256215097AT0.00051DNAJC14-FALSE
chr128825805GA0.00115PHACTR4+FALSEAluSpSINE,Alu
chr1155230131CT0.00829SCAMP3-FALSE
chr2112252464GA2.95640E-06MIR4435-2HG-FALSE
chr110042988AG3.32241E-06NMNAT1+TRUEAluScSINE,Alu
chr110044367AG5.42058E-05NMNAT1+TRUEAluSx1SINE,Alu
chr123636274GT0.00032HNRNPR-FALSE
chr312882839CG0.00118RPL32-FALSE
chr1559428230GA0.00891MYO1E-FALSEMLT1BSINE,Alu
chr3196557357GT0.00615PAK2+FALSE
chr310192825AG0.00042VHL+TRUEAluSx1SINE,Alu
chr12522392GA0.00227FAM213B,MMEL1+,-FALSE
chr1165877666TC0.00327UCK2+FALSE(T)nSINE,Alu
chr7100957852TC1.09184E-06LOC101927746,IFT22+,-FALSEMADE1SINE,Alu
chr3100119819CT0.00850TOMM70-FALSE
chr1155853251AG0.00207SYT11+TRUEAluJbSINE,Alu
chr644417182AG0.00018CDC5L+TRUEFLAM_CSINE,Alu
chr1945406537TC0.00278TOMM40+FALSE
chr1610625406TC1.26372E-11EMP2-TRUEAluSxSINE,Alu
chr1100489571GA1.40531E-05SLC35A3+FALSEAluScSINE,Alu
chr1154323598TA0.00198ATP8B2+FALSE(TA)nSINE,Alu
chr1563445744AT0.00539RPS27L-FALSE
chr1565442602TC8.94083E-05CLPX-TRUEAluSg4SINE,Alu
chr16585331TC0.00779NOL9-TRUEFAMSINE,Alu
chr1184663581TC0.00265EDEM3-FALSE
chr133149373AG0.00239SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr1114455907GA0.00705DCLRE1B+FALSE
chr11125526125AG0.00374CHEK1+TRUEFRAMSINE,Alu
chr255516908AG0.00016CCDC88A-FALSE(GA)nSINE,Alu
chr13761479CT0.00226CEP104-FALSE
chr128661831AG9.37902E-09MED18+TRUEAluSgSINE,Alu
chr1109180686CT1.31584E-05FAM102B+FALSE
chr59549459AG0.00783SNHG18+FALSE
chr314175262TC3.06250E-10TMEM43+FALSE
chr16582498TC0.00403NOL9-TRUEAluSx1SINE,Alu
chr980333361CT0.00382GNAQ-FALSE
chr1144931392GA0.00683NBPF20,PDE4DIP+,-FALSE
chr72650926GA0.00306IQCE+FALSE
chr510655842CT0.00024ANKRD33B+FALSE
chr5134236206AG0.00065TXNDC15+TRUEAluSqSINE,Alu
chr1225683180GT0.00076ENAH-FALSE
chr1181057874TG0.00099IER5+FALSE
chr116935130CT0.00288NBPF1-FALSE
chr154493197TC0.00148TMEM59-TRUEAluSz6SINE,Alu
chr9137534059CA0.00626COL5A1+FALSE
chr2109401286GT0.00087RANBP2+FALSE
chrX123047168AG2.82326E-05XIAP+TRUEAluSxSINE,Alu
chr132697063TC0.00035EIF3I+FALSEAluSpSINE,Alu
chr333907945AG3.34896E-07PDCD6IP+FALSE
chr1167973198AG0.00061DCAF6+FALSE
chr2217366515AG0.00357.FALSEAluSzSINE,Alu
chr1220310158AC0.00159IARS2+FALSE
chr631321916AG0.00000.FALSE
chr128826128AG0.00060PHACTR4+TRUEAluJbSINE,Alu
chr136770621GT0.00424THRAP3+FALSE(T)nSINE,Alu
chr4152025793TA0.00675RPS3A+FALSE
chr1236744712CA0.00054HEATR1-FALSE
chr136535590AG0.00301.FALSEAluSx1SINE,Alu
chr1015120278TC0.00018ACBD7-TRUEL1PA7SINE,Alu
chr146117185CT0.00714GPBP1L1-FALSE
chr1921907988CT0.00295ZNF100-FALSE
chr1145512937AG1.47906E-06NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr825317824AT0.00017CDCA2+FALSE
chr1145369498AG0.00700NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr19324670AG0.00734H6PD+FALSE
chr115989141CG0.00091.FALSE
chr1674655596TG0.00028RFWD3-FALSEAluSxSINE,Alu
chr5139931633CA0.00014SRA1-FALSE
chr315115284GA0.00305RBSN-FALSE
chr110459165GA2.83145E-06PGD+FALSE
chr7129472357AG0.00287UBE2H-FALSE
chr203848225AG0.00075MAVS+TRUEAluJrSINE,Alu
chr1230416414TG0.00360GALNT2+FALSE
chr237328082TC1.18454E-08.FALSE
chr1182353198AT0.00985GLUL-FALSE
chr5177576460CT0.00635.FALSE
chr1919793875AG0.00198ZNF101+TRUEAluSc8SINE,Alu
chr1154323557CT0.00018ATP8B2+FALSE
chr12133635613TC0.00805.FALSE
chr116890484GC0.00704NBPF1-FALSE
chr11344749AG0.00307.FALSEAluSx1SINE,Alu
chr2202031506AG0.00508CFLAR+TRUESVA_ASINE,Alu
chr261278017AG8.96590E-05PEX13+TRUEAluYSINE,Alu
chr1109855150AC0.00062SORT1-FALSEA-richSINE,Alu
chr128825331AG0.00051PHACTR4+TRUEAluSgSINE,Alu
chr4140310370TC0.00335NAA15+FALSE(T)nSINE,Alu
chr1789187CG5.07459E-05LINC01128+FALSE
chr2233446265TC0.00177EIF4E2+FALSE
chr3197682724TA0.00556IQCG-FALSE
chr556177846GC0.00952MAP3K1+FALSE
chr342610515GA0.00099SEC22C-FALSE
chr1114306563TA0.00191RSBN1-FALSE
chr744842099AG1.82502E-05PPIA+TRUE
chr1204524866AG0.00369MDM4+TRUEAluSxSINE,Alu
chr170718273AT0.00256.FALSE
chr299812864AG0.00458MRPL30+TRUEAluJbSINE,Alu
chr1225974592TG2.09928E-05SRP9+FALSEAluJrSINE,Alu
chr2191799592AG2.07606E-11GLS+TRUE
chr11152309AT0.00035SDF4-FALSE
chrX77083846TC0.00668MAGT1-TRUEAluSzSINE,Alu
chr122419434TG0.00649CDC42+FALSE
chr989627063AG0.00614LOC440173-FALSE
chr116889639TC0.00524NBPF1-TRUE
chr151822219GA0.00018EPS15-FALSE
chr716823610TG0.00765TSPAN13+FALSE
chr1120612154CG0.00803NOTCH2-FALSE
chr3196659892TG0.00620SENP5+FALSEAluSzSINE,Alu
chr340503554AC0.00197RPL14+FALSE
chr121671943TG0.00471ECE1-FALSE(GCTCCCG)nSINE,Alu
chr167874697TC0.00642SERBP1-TRUEAluSx3SINE,Alu
chr131344628TA0.00085SDC3-FALSE
chr1113240711GA0.00454MOV10+FALSE
chr381698130TC2.93981E-08GBE1-FALSE
chr1200375005AT0.00202ZNF281-FALSE
chr76501819AT0.00037KDELR2-FALSE
chr417802956TC0.00249DCAF16-TRUEAluSzSINE,Alu
chr1156495520TA0.00048IQGAP3-FALSE
chr1423794557TA0.00983BCL2L2-PABPN1,PABPN1+FALSEA-richSINE,Alu
chr11345002AG0.00141.FALSEAluSgSINE,Alu
chr1154454628TC0.00099SHE-TRUEAluSq2SINE,Alu
chr861655619CT0.00475CHD7+FALSE
chr125644747TC0.00972RSRP1,RHD+,-FALSEAluSx1SINE,Alu
chr19328102AG7.16435E-05H6PD+TRUEAluJrSINE,Alu
chr3191116133CT0.00032CCDC50+FALSE
chr417802956TC0.00480DCAF16-TRUEAluSzSINE,Alu
chr439552174TC0.00026UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr388199298TC0.00112C3orf38+FALSE
chr2131906031CT0.00374PLEKHB2+FALSE
chr128824065CT0.00345PHACTR4+FALSE
chr1916663345TC0.00304SLC35E1-TRUEAluSgSINE,Alu
chr186986259GA5.32960E-05LAMA1-FALSE
chr116933623GA0.00789NBPF1-FALSEGA-richSINE,Alu
chr133148214AG0.00734SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1689623607AG0.00915SPG7+FALSE
chr534906547TC0.00051RAD1-TRUEAluJoSINE,Alu
chrX152916230AC1.62471E-05DUSP9+FALSE
chr146828700AG0.00095NSUN4+FALSE
chr312942851CG0.00013IQSEC1-FALSE
chr1148753279GT0.00358.FALSE
chr1160967856TC0.00116F11R-TRUEAluSpSINE,Alu
chr6150047376TC0.00612NUP43-TRUEAluScSINE,Alu
chr1144821900CG6.24876E-05NBPF20,NBPF9+FALSE
chr16283550AT0.00225ICMT-FALSE
chr320025677GT0.00116RAB5A,PP2D1+,-FALSE
chr138423235CA0.00040SF3A3-FALSEAluJoSINE,Alu
chr116890644CT0.00439NBPF1-FALSE
chr131905887AC0.00245SERINC2+FALSE
chr552397314CT0.00249MOCS2-FALSE
chr237328013TC0.00401.FALSE
chr185786299TA0.00502DDAH1-FALSE
chr231611143CT0.00117XDH-FALSE
chr1165065373AG0.00487POLA2+TRUEAluYSINE,Alu
chr1671681515AG0.00308PHLPP2-FALSE
chr146660295TC0.00871POMGNT1-FALSE
chr345722253AG0.00663LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr1749041692TC2.35976E-05SPAG9-TRUEAluSxSINE,Alu
chr1110566210TA0.00832AHCYL1+FALSE
chr136067752TC5.48772E-07PSMB2-TRUEAluSzSINE,Alu
chr227293350AT0.00314AGBL5,OST4+,-FALSE
chr138174665GA0.00475CDCA8+FALSE
chr119545145AT0.00510LOC101927895,EMC1+,-FALSE
chr642856917AG0.00280RPL7L1+TRUEAluSpSINE,Alu
chr116933628AG0.00430NBPF1-FALSEGA-richSINE,Alu
chr1256510559AG0.00137RPL41+FALSE
chr118707397TA0.00046RPL27A+FALSE
chr119545144GT0.00071LOC101927895,EMC1+,-FALSE
chr340578933AG0.00947ZNF621+TRUEAluJrSINE,Alu
chr116945409TA0.00290CROCCP2-FALSE
chr3179117128TC0.00239GNB4-TRUEAluSzSINE,Alu
chr5151041885GT0.00644SPARC-FALSE
chr1116235179GT0.00187VANGL1+FALSE
chr133961147TG0.00236ZSCAN20+FALSE
chr1224517842CT0.00014NVL-FALSE
chr1200521412GA0.00292KIF14-FALSE
chr388199298TC0.00048C3orf38+FALSE
chr1156567496CT0.00012GPATCH4-FALSEMIR3SINE,Alu
chr1075009921TC0.00639DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr116703162AT0.00726MRPL17-FALSE

Differential Expression Gene Analysis