RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	161130521	G	A	0.00454	RBMS1	-	FALSE
chr1	114940216	T	G	0.00674	TRIM33	-	FALSE	(T)n	SINE,Alu
chr9	70483778	A	T	0.00026	CBWD5	-	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr1	6730782	C	T	0.00807	DNAJC11	-	FALSE
chr4	7762848	G	A	4.98180E-08	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	31405694	G	A	0.00986	PUM1	-	FALSE
chr4	89181477	T	C	7.00483E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr2	8823941	G	A	0.00053	ID2	+	FALSE
chr1	37949806	G	A	2.03247E-05	ZC3H12A	+	FALSE
chr2	198368110	C	A	0.00053	HSPE1,HSPE1-MOB4	+	FALSE
chr12	133298428	A	G	7.41792E-11	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	12677549	T	A	1.84464E-05	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	19585207	G	A	0.00672	MRTO4	+	FALSE
chr1	33148623	A	G	0.00078	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	3609064	G	A	0.00194	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	114515717	G	A	0.00018	HIPK1	+	FALSE
chr1	15899549	T	C	0.00960	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr2	127826533	A	G	0.00942	BIN1	-	FALSE
chr3	188596752	A	G	0.00203	LPP	+	FALSE
chrX	123046892	A	G	0.00064	XIAP	+	TRUE	AluSx	SINE,Alu
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr1	19543465	T	C	0.00117	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	1594835	C	G	0.00195	CDK11B,SLC35E2B	-	FALSE
chr1	93617403	T	G	0.00053	TMED5	-	FALSE
chr1	46075663	A	G	0.00068	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	211921422	T	G	0.00686	LPGAT1	-	FALSE
chr20	18468351	T	C	0.00169	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr3	179117242	T	C	0.00011	GNB4	-	TRUE	AluSz	SINE,Alu
chr3	10192694	A	G	0.00277	VHL	+	TRUE	AluSx1	SINE,Alu
chr5	43575020	T	C	8.37337E-06	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr7	6501831	T	A	0.00110	KDELR2	-	FALSE
chr2	50147866	G	A	0.00130	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr4	57326236	A	G	0.00699	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	97543764	C	T	0.00901	DPYD	-	FALSE
chr13	110407598	A	G	0.00222	IRS2	-	FALSE
chr1	9328120	A	G	1.75282E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	178406762	G	T	0.00708	AGPS	+	FALSE
chr6	42856917	A	G	0.00280	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr2	46524711	C	T	0.00513	EPAS1	+	FALSE
chr1	33149414	A	G	0.00990	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr17	74561213	A	G	0.00241	SNHG16	+	FALSE
chr1	214529302	C	T	0.00331	PTPN14	-	FALSE	AluJb	SINE,Alu
chr4	187647832	C	G	0.00592		.	FALSE
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	58946773	C	T	0.00037	OMA1	-	FALSE
chr1	94930345	G	A	1.57139E-05	ABCD3	+	FALSE
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr6	34254585	G	T	0.00519		.	FALSE	AluSq2	SINE,Alu
chr5	134062606	T	G	0.00193	SEC24A	+	FALSE
chr1	19543349	T	C	2.12419E-08	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	172115589	G	T	0.00435	FNDC3B	+	FALSE
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr2	206987228	T	C	0.00052		.	FALSE	AluSx	SINE,Alu
chr1	230416399	G	T	5.37638E-05	GALNT2	+	FALSE
chr2	24225509	A	G	0.00132		.	FALSE	AluSq2	SINE,Alu
chr8	11701429	T	C	0.00496	CTSB	-	TRUE	AluSx1	SINE,Alu
chr1	179042590	A	G	0.00152	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr5	179048585	T	C	0.00150	HNRNPH1	-	FALSE
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr1	117644949	C	G	0.00862	TTF2	+	FALSE
chr1	110136683	A	C	0.00183	GNAI3	+	FALSE
chr9	108152702	G	A	2.83018E-05	SLC44A1	+	FALSE
chr4	39780672	C	A	0.00743	UBE2K	+	FALSE
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr1	28858860	C	T	0.00213	RCC1	+	FALSE
chr5	40832550	C	T	7.98859E-06	RPL37	-	FALSE
chr1	145512074	A	G	0.00084	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	34080819	A	C	0.00815	LINC01317	+	FALSE	MSTD	SINE,Alu
chr7	30634661	C	G	3.93145E-07	GARS	+	FALSE
chr6	44417136	A	G	0.00644	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	183642878	G	A	0.00373	DNAJC10	+	FALSE
chr1	145511962	A	G	0.00091	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	11810674	G	A	0.00279	AGTRAP	+	FALSE
chr5	125961447	A	G	0.00242	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	154554940	G	C	0.00032	ADAR	-	FALSE
chr1	91990450	A	T	0.00614	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	56703746	A	C	0.00017	FAM208A	-	FALSE
chr3	155660961	A	G	6.62819E-05		.	FALSE	AluSz	SINE,Alu
chr1	6283264	T	C	0.00095	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	26143726	G	T	0.00556	SEPN1	+	FALSE	AluSx	SINE,Alu
chr2	39009427	A	G	1.04745E-05		.	FALSE	AluSx3	SINE,Alu
chr1	228520973	C	G	0.00875	OBSCN	+	FALSE
chr1	10517290	T	C	0.00366		.	FALSE	AluJr	SINE,Alu
chr3	148748380	T	C	0.00240	HLTF	-	FALSE
chr2	99772827	A	G	4.47582E-05	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr13	46700519	C	A	0.00089	LCP1	-	FALSE
chr2	206983255	T	C	0.00246		.	FALSE	AluJb	SINE,Alu
chr1	36642328	C	T	0.00971	MAP7D1	+	FALSE	GA-rich	SINE,Alu
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr1	244571947	C	T	0.00775	ADSS	-	FALSE
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr1	227071525	C	T	0.00013	PSEN2	+	FALSE
chr1	110173775	G	T	0.00038	AMPD2	+	FALSE
chr1	46830430	G	A	0.00023	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	9160982	T	C	0.00304		.	FALSE	AluJb	SINE,Alu
chr2	70316226	A	C	0.00426	PCBP1	+	FALSE
chr1	200375846	G	T	0.00061	ZNF281	-	FALSE	(T)n	SINE,Alu
chr12	72096335	A	G	1.07858E-05	TMEM19	+	FALSE	AluSz6	SINE,Alu
chr1	148004475	C	G	7.81276E-06	NBPF8	-	FALSE
chr1	16901668	T	C	0.00421	NBPF1	-	FALSE
chr1	145500919	C	T	0.00029	NBPF20,NBPF10,LIX1L	+	FALSE
chr5	122359502	A	C	0.00707	PPIC	-	FALSE	(AC)n	SINE,Alu
chr5	178293266	G	A	0.00924	ZNF354B	+	FALSE
chr4	88061645	T	A	0.00049	AFF1	+	FALSE	(TATAT)n	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr1	168220363	A	G	0.00488		.	FALSE	AluSz6	SINE,Alu
chr11	110128567	A	T	0.00634	RDX	-	FALSE
chr1	118068699	C	G	0.00191		.	FALSE
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr5	110463616	G	T	0.00264	WDR36	+	FALSE	(T)n	SINE,Alu
chr5	149781426	A	G	0.00977	CD74	-	FALSE
chr2	198255334	A	T	0.00551		.	FALSE
chr1	32799435	A	T	0.00515	MARCKSL1	-	FALSE
chr9	131093336	T	C	0.00397	COQ4	+	FALSE	AluY	SINE,Alu
chr6	79649800	C	G	0.00864	PHIP	-	FALSE
chr1	10519982	T	C	6.11297E-05		.	FALSE	AluJr	SINE,Alu
chr3	197400501	C	G	0.00270	RUBCN	-	FALSE
chr3	15114293	T	C	2.60553E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr20	25427856	A	G	0.00094	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr3	10192608	A	G	0.00245	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	144481235	A	G	1.18230E-05	NBPF20	+	FALSE
chr3	47628808	A	T	0.00792	SMARCC1	-	FALSE
chr2	113334178	A	T	0.00654	POLR1B	+	FALSE	L1MA10	SINE,Alu
chr5	81571877	C	T	0.00033	RPS23	-	FALSE
chr2	86731290	T	C	0.00149	CHMP3,RNF103-CHMP3	-	FALSE	L1MC1	SINE,Alu
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr3	160154971	T	C	0.00820	TRIM59	-	FALSE	AluJb	SINE,Alu
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr8	128944719	A	T	0.00093	PVT1	+	FALSE
chr15	42861741	A	G	0.00200	HAUS2	+	TRUE	AluJb	SINE,Alu
chr1	16893813	A	G	0.00385	NBPF1	-	FALSE
chr1	1549354	G	A	0.00383		.	FALSE	HAL1	SINE,Alu
chr1	9162224	T	C	0.00124		.	FALSE	AluSx	SINE,Alu
chr5	134236287	A	G	0.00538	TXNDC15	+	TRUE	AluSq	SINE,Alu
chr1	145303971	A	G	0.00060	NBPF20,NBPF10	+	FALSE
chr3	73115126	A	T	0.00228	PPP4R2	+	FALSE
chr3	176739158	C	A	0.00612	TBL1XR1	-	FALSE
chr1	16893691	C	A	0.00566	NBPF1	-	FALSE
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr12	98942886	A	G	1.80851E-07	TMPO	+	TRUE	AluSc	SINE,Alu
chr6	29857113	C	A	0.00582		.	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr2	233446568	G	A	0.00900	EIF4E2	+	FALSE
chr1	145689611	C	A	0.00104	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr3	196769982	C	G	0.00131	DLG1	-	FALSE
chr15	42503335	T	C	0.00023	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr3	139086995	C	A	0.00743	COPB2	-	FALSE
chr1	94352553	C	T	0.00136	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	26161129	A	C	0.00607	AUNIP	-	FALSE
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr6	42045563	A	G	4.21139E-05	TAF8	+	TRUE	AluSz	SINE,Alu
chr10	75009579	T	C	3.24788E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr2	98272734	A	G	0.00996	ACTR1B	-	FALSE
chr10	75008847	T	C	0.00349	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	23240255	G	A	0.00873	EPHB2	+	FALSE
chr3	4403394	A	G	0.00388	SUMF1	-	FALSE
chr1	204520409	A	G	0.00504	MDM4	+	TRUE	AluJb	SINE,Alu
chr3	45636335	A	G	0.00262	LIMD1	+	FALSE	(AC)n	SINE,Alu
chr1	1252468	T	C	0.00182	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr2	61277384	A	G	0.00339	PEX13	+	TRUE	AluSx	SINE,Alu
chr5	81571876	A	T	0.00013	RPS23	-	FALSE
chr16	57505635	G	T	0.00974	POLR2C	+	FALSE
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr1	32681795	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr1	85278156	C	T	0.00663		.	FALSE	AluSz6	SINE,Alu
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr3	45960558	C	T	6.37727E-08	FYCO1	-	FALSE
chr1	10093371	C	T	0.00264	UBE4B	+	FALSE
chr3	197362030	C	T	0.00302		.	FALSE
chr1	16889642	T	C	0.00480	NBPF1	-	TRUE
chr19	59093999	A	G	0.00018	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	10517689	T	C	0.00504		.	FALSE	AluSx1	SINE,Alu
chr1	144917841	T	C	4.47769E-05	NBPF20,PDE4DIP	+,-	FALSE
chr10	15120275	T	C	0.00387	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr3	37366459	C	A	2.94197E-05	GOLGA4	+	FALSE
chr1	9160989	T	C	0.00495		.	FALSE	AluJb	SINE,Alu
chr2	86252198	T	C	0.00076	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	51873951	G	A	1.40484E-05	EPS15	-	FALSE
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr2	153512503	C	T	0.00082	PRPF40A	-	FALSE
chr3	107765249	T	C	0.00156	CD47	-	FALSE
chr3	183900836	G	A	2.54977E-05	AP2M1	+	FALSE
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chr1	146650289	C	T	0.00967	PDIA3P1	+	FALSE
chr1	206566195	C	T	0.00052	SRGAP2	+	FALSE
chr19	53155674	T	C	1.27993E-05	ZNF83	-	TRUE	AluSg	SINE,Alu
chr1	36068184	T	C	0.00177	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	16890598	T	A	0.00375	NBPF1	-	FALSE
chr1	206566195	C	T	0.00706	SRGAP2	+	FALSE
chr1	87328400	C	T	0.00755	SEP15	-	FALSE
chr2	85776648	T	C	0.00765	GGCX	-	TRUE	AluSz6	SINE,Alu
chr7	112579815	G	T	0.00997	BMT2	-	FALSE	(CGC)n	SINE,Alu
chr1	16133978	T	C	0.00625	UQCRHL	-	FALSE
chr1	67874859	T	C	0.00209	SERBP1	-	TRUE	AluSx	SINE,Alu
chr12	98942840	A	G	0.00031	TMPO	+	FALSE	AluSc	SINE,Alu
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr2	37230734	C	T	0.00025	HEATR5B	-	FALSE
chr1	74672474	G	A	0.00150	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	161753841	G	A	0.00039	ATF6	+	FALSE
chr1	169101307	C	T	0.00405	ATP1B1	+	FALSE
chr6	160526548	C	A	0.00086	IGF2R	+	FALSE
chr1	32158374	T	C	0.00134	COL16A1	-	FALSE
chr1	65898873	G	C	0.00530	LEPR,LEPROT	+	FALSE
chr1	235492546	T	G	0.00786	GGPS1	+	FALSE
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr1	149577127	G	C	0.00709	LINC00623,LINC00869,LOC103091866	+	FALSE
chr4	39551166	T	C	0.00309	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr2	232319578	C	A	0.00844	NCL	-	FALSE	A-rich	SINE,Alu
chr1	45279898	C	T	0.00271		.	FALSE	(TCTT)n	SINE,Alu
chr19	11256626	T	C	1.61091E-07	SPC24	-	TRUE	AluJr4	SINE,Alu
chr2	37479862	C	T	0.00603	PRKD3	-	FALSE
chr1	16958063	C	T	0.00246		.	FALSE
chr1	6283418	T	C	0.00464	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr1	158067059	A	C	0.00655	KIRREL	+	FALSE
chr1	21100753	T	C	0.00624	HP1BP3	-	TRUE	AluJr	SINE,Alu
chr2	91847987	C	G	0.00083		.	FALSE	TAR1	SINE,Alu
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr1	9645101	C	T	0.00726		.	FALSE	(ATATTC)n	SINE,Alu
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	29443675	T	C	0.00190	EPB41	+	FALSE

RBP	EIF4B
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR774BXV
Platform	HiSeq
Pubmed ID	32252787

EIF4B - Target Gene Network