RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr1	184675814	G	A	0.00730	EDEM3	-	FALSE
chr1	117530217	C	T	0.00048	PTGFRN	+	FALSE
chr2	191745652	A	T	1.16463E-05	GLS	+	FALSE
chr11	48189152	A	C	0.00050	PTPRJ	+	FALSE
chr1	10520819	T	C	0.00022	DFFA	-	TRUE	AluSc8	SINE,Alu
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr3	172117457	C	A	0.00037	FNDC3B	+	FALSE
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr1	214524566	T	C	0.00040	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	193054574	G	T	0.00511	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr1	101541172	A	G	6.48917E-05	LOC102606465	+	TRUE	MLT1K	SINE,Alu
chr5	179048449	T	G	0.00394	HNRNPH1	-	FALSE
chr4	39528976	C	T	8.52335E-05	UGDH	-	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chrX	152916230	A	C	1.62471E-05	DUSP9	+	FALSE
chr7	17384437	A	G	0.00192	AHR	+	TRUE	AluSx	SINE,Alu
chr10	24873171	G	T	0.00329	ARHGAP21	-	FALSE
chr1	36068369	T	C	5.31121E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	74493432	A	C	0.00611	CD109	+	FALSE
chr3	194789330	G	T	0.00150	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr1	78414285	T	A	0.00179	FUBP1	-	FALSE
chr8	23049112	T	C	0.00774	TNFRSF10A	-	TRUE
chr1	150621090	G	A	0.00212	GOLPH3L	-	FALSE
chr6	143382538	A	T	0.00145	AIG1	+	FALSE
chr2	37330172	T	G	0.00972		.	FALSE
chr16	66765441	G	T	4.44089E-16	DYNC1LI2	-	FALSE	L2c	SINE,Alu
chr1	144821900	C	G	6.24876E-05	NBPF20,NBPF9	+	FALSE
chr1	93297607	C	T	0.00016	RPL5	+	FALSE
chr17	57281021	A	G	1.37320E-05	PRR11	+	TRUE	AluSz	SINE,Alu
chr3	179117242	T	C	0.00011	GNB4	-	TRUE	AluSz	SINE,Alu
chr17	25640295	T	A	0.00154	WSB1	+	FALSE
chr1	45187511	T	C	7.71832E-06	C1orf228	+	FALSE	U5	SINE,Alu
chr1	1653046	T	A	0.00686	CDK11B,CDK11A	-	FALSE
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr7	44841646	A	C	0.00316	PPIA	+	FALSE	AluJr	SINE,Alu
chrX	135300092	T	C	0.00075	MAP7D3	-	TRUE	AluSz	SINE,Alu
chr1	63924020	C	T	0.00139	ITGB3BP	-	FALSE
chr5	37290504	T	C	0.00410		.	FALSE	AluSz	SINE,Alu
chr14	75202722	A	G	0.00022	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	200375418	C	T	0.00671	ZNF281	-	FALSE
chr2	238678002	C	G	0.00711	LRRFIP1	+	FALSE
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	99812978	A	G	0.00475	MRPL30	+	TRUE	AluJb	SINE,Alu
chr6	150046734	T	C	0.00248	NUP43	-	FALSE
chr1	90152146	C	T	1.61967E-05	LRRC8C	+	FALSE
chr1	6283264	T	C	0.00287	ICMT	-	TRUE	AluSx3	SINE,Alu
chr15	42860120	A	G	0.00045	HAUS2	+	TRUE	AluSg	SINE,Alu
chr2	112252464	G	A	2.95640E-06	MIR4435-2HG	-	FALSE
chr3	197611262	A	G	0.00208		.	FALSE	AluSx1	SINE,Alu
chr1	156262653	A	C	0.00128	GLMP	-	FALSE
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr1	6314171	G	A	0.00855	GPR153	-	FALSE
chr1	38423183	C	T	0.00210	SF3A3	-	FALSE	AluJo	SINE,Alu
chr3	195411991	C	A	0.00058	SDHAP2	+	FALSE
chr1	154128838	G	T	0.00062	TPM3	-	FALSE
chr1	32638906	C	T	4.63739E-10	KPNA6	+	FALSE
chr1	19585553	A	G	0.00558	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr2	38971642	G	C	0.00013	SRSF7	-	FALSE
chr1	100549600	G	T	0.00181	SASS6	-	FALSE
chr2	74333231	C	T	0.00073	TET3	+	FALSE
chr16	88891240	C	A	0.00826	GALNS	-	FALSE
chr12	98943149	A	G	0.00019	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	144828683	C	G	3.91144E-05	NBPF20,NBPF9	+	FALSE
chr1	233518885	T	C	0.00021	MLK4	+	FALSE	(TTTC)n	SINE,Alu
chr6	42048297	A	G	0.00307	TAF8	+	TRUE	AluSq2	SINE,Alu
chr1	16945504	C	T	0.00995	CROCCP2	-	FALSE
chr1	8045340	C	A	0.00217	PARK7	+	FALSE
chr16	81064543	A	G	0.00066	CENPN	+	TRUE	AluSg	SINE,Alu
chr5	122359494	G	C	0.00043	PPIC	-	FALSE
chr3	195415462	G	A	0.00140	LINC00969,SDHAP2	+	FALSE
chr19	24104040	A	G	0.00476	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr3	40578815	A	G	0.00041	ZNF621	+	FALSE	AluJr	SINE,Alu
chr1	86815303	T	C	0.00571	ODF2L	-	FALSE
chr8	145159712	A	G	0.00402	MAF1	+	FALSE
chr1	36068231	T	C	0.00022	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr1	229586611	T	C	0.00794	NUP133	-	TRUE	AluSz	SINE,Alu
chr3	167727417	C	T	2.31470E-08	GOLIM4	-	FALSE
chr4	187509420	G	A	0.00121	FAT1	-	FALSE
chr3	48787219	A	G	0.00024	PRKAR2A	-	FALSE
chr10	51612914	T	C	0.00063	TIMM23B,TIMM23	+,-	FALSE
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr5	25415881	T	C	0.00911		.	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr1	109476780	C	T	0.00990	GPSM2,CLCC1	+,-	FALSE
chr3	10168785	T	C	0.00198	BRK1	+	FALSE
chr1	10520045	T	C	0.00085		.	FALSE	AluSx	SINE,Alu
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr1	26755643	A	G	0.00728	LIN28A	+	FALSE	AluSc	SINE,Alu
chr1	26449327	A	G	0.00330	PDIK1L	+	FALSE
chr2	10586899	G	A	0.00312	ODC1,SNORA80B	-	FALSE
chr7	65844062	T	A	0.00733	LINC00174	-	FALSE
chr1	28566320	T	C	0.00309		.	FALSE	AluSx1	SINE,Alu
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr1	10318652	C	G	0.00047	KIF1B	+	FALSE
chr2	55516940	A	C	0.00389	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	33149363	A	G	0.00237	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	148003752	T	C	3.77288E-10	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	143399383	T	A	0.00198		.	FALSE	L1MC4	SINE,Alu
chr5	17276088	C	A	0.00171	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr1	146495576	G	C	0.00107	LOC728989	-	FALSE
chr9	136209400	A	G	0.00328	MED22	-	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr1	19585553	A	G	4.91829E-14	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr15	42550445	T	C	0.00360	TMEM87A	-	FALSE
chr1	64125439	A	C	3.63698E-07	PGM1	+	FALSE
chr5	65453894	T	A	0.00211	SREK1	+	FALSE
chr4	2940147	T	C	0.00061	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	52520864	A	T	0.00041	TXNDC12	-	FALSE
chr1	145368461	A	C	0.00542	NBPF20,NBPF10	+	FALSE
chr1	32096265	A	G	0.00208	PEF1	-	FALSE
chr1	22419434	T	G	0.00649	CDC42	+	FALSE
chr1	70904800	G	T	0.00020	CTH	+	FALSE
chr3	10192717	A	G	3.16601E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	42877749	T	C	0.00287	GJC1	-	TRUE	AluSg	SINE,Alu
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr1	36770601	G	T	0.00055	THRAP3	+	FALSE	(T)n	SINE,Alu
chr7	128142395	A	C	0.00300	METTL2B	+	FALSE
chr1	33149443	A	G	2.90388E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr19	11257644	T	C	0.00991	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	16918783	C	T	0.00252	NBPF1	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	16946336	G	A	0.00409	CROCCP2	-	FALSE
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr1	157044418	G	C	0.00707		.	FALSE
chr10	75534488	C	T	0.00025	FUT11	+	FALSE
chr1	51873951	G	A	0.00591	EPS15	-	FALSE
chr3	10192747	A	G	0.00893	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	100084203	C	G	0.00484	TOMM70	-	FALSE
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr1	28825331	A	G	0.00563	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	6583270	C	G	0.00026	NOL9	-	FALSE
chr7	6501829	T	A	0.00124	KDELR2	-	FALSE
chr1	9324451	C	T	0.00266	H6PD	+	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr2	61764916	A	C	0.00189	XPO1	-	FALSE	(AC)n	SINE,Alu
chr8	48890293	A	G	0.00125	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	3545199	G	C	0.00188	TPRG1L	+	FALSE
chr9	136209404	G	A	0.00361	MED22	-	FALSE	(CAGGG)n	SINE,Alu
chr2	73460316	G	T	0.00368	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr1	21102502	C	A	0.00021	HP1BP3	-	FALSE
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr7	135291501	T	C	0.00627	NUP205	+	FALSE
chr1	33148213	A	G	0.00958	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	179042482	A	G	1.77761E-07	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	109856378	C	A	0.00804	SORT1	-	FALSE
chr1	118166096	C	T	0.00861	FAM46C	+	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr11	64084160	C	T	0.00895	ESRRA,TRMT112	+,-	FALSE
chr1	120163247	T	C	0.00365	ZNF697	-	FALSE
chr19	9673113	T	C	0.00330		.	FALSE	AluSx3	SINE,Alu
chr15	102516512	G	A	0.00041	WASH3P	+	FALSE
chr4	88059194	C	T	0.00681	AFF1	+	FALSE
chr1	16926980	T	C	0.00062	NBPF1	-	FALSE
chr1	27107650	T	A	3.71504E-05	ARID1A	+	FALSE
chr2	37872508	G	A	5.12140E-05	CDC42EP3	-	FALSE
chr1	43629979	G	T	0.00470	EBNA1BP2	-	FALSE
chr1	36068210	T	C	0.00812	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	38174987	T	C	0.00032	CDCA8	+	FALSE
chr1	117531179	G	A	0.00116	PTGFRN	+	FALSE
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr14	70838369	T	C	0.00015	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr3	33430398	T	A	0.00025	UBP1	-	FALSE
chr9	108152702	G	A	2.83018E-05	SLC44A1	+	FALSE
chr1	179811337	C	A	0.00670	TOR1AIP2	-	FALSE	AluSp	SINE,Alu
chr3	155660873	A	G	0.00018		.	FALSE	AluSz	SINE,Alu
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr12	106460001	G	A	2.23324E-05	NUAK1	-	FALSE
chr1	28661576	A	G	0.00021	MED18	+	TRUE	AluSg	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr2	32447868	A	G	0.00663	SLC30A6	+	FALSE
chr6	44417136	A	G	0.00644	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	33086876	T	C	0.00672	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr1	16889414	T	C	0.00384	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr10	124815149	C	G	0.00993	ACADSB	+	FALSE	THE1A-int	SINE,Alu
chr2	87821033	C	A	0.00474		.	FALSE
chr10	3208557	A	G	0.00128	PITRM1	-	FALSE
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr1	109535128	G	A	0.00063	WDR47	-	FALSE
chr1	21810693	A	G	0.00370	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr3	101399945	A	G	0.00965	RPL24	-	FALSE
chr3	10193358	A	G	0.00317	VHL	+	TRUE	L1ME4a	SINE,Alu
chr1	145369556	A	G	0.00061	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	36770073	A	T	4.33965E-05	THRAP3	+	FALSE
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr7	129251289	C	T	0.00808		.	FALSE
chr1	59122056	G	C	1.57132E-06	MYSM1	-	FALSE
chr1	46075187	A	C	0.00024	NASP	+	FALSE	A-rich	SINE,Alu
chr1	1650832	A	G	0.00241	CDK11B,CDK11A	-	FALSE
chr2	37431604	A	G	0.00876	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr16	67715404	T	C	0.00102	GFOD2	-	TRUE	AluSz	SINE,Alu
chr17	1486543	G	C	0.00452	SLC43A2	-	FALSE
chr1	154128827	A	T	0.00724	TPM3	-	FALSE
chr3	10192826	A	G	0.00037	VHL	+	TRUE	AluSx1	SINE,Alu
chr17	65334726	T	C	7.47982E-07	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	144594170	C	T	0.00636	NBPF20	+	FALSE
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr2	11323108	T	A	0.00100	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr15	41591457	A	G	1.25234E-05	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr4	152020780	C	T	0.00925	RPS3A	+	FALSE
chr19	33470874	A	G	0.00119	RHPN2	-	FALSE
chr2	203741032	T	C	0.00282		.	FALSE	AluJr	SINE,Alu
chr2	28002599	T	A	0.00566	MRPL33	+	FALSE
chr3	195411239	A	C	5.03065E-05	SDHAP2	+	FALSE
chr1	10043043	A	G	0.00529	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	99164434	G	A	0.00309	SNX7	+	FALSE
chr1	19585207	G	A	0.00672	MRTO4	+	FALSE
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	48787052	T	C	0.00866	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	65696034	G	C	0.00803	AK4	+	FALSE
chr1	87328400	C	T	0.00755	SEP15	-	FALSE
chr1	23636452	A	G	0.00294	HNRNPR	-	FALSE
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr1	214529170	T	C	0.00670	PTPN14	-	TRUE
chr4	2940098	T	C	0.00034	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	16889639	T	C	0.00350	NBPF1	-	TRUE
chr1	10041432	A	G	0.00132	NMNAT1	+	TRUE	AluYj4	SINE,Alu
chr3	14526653	G	T	0.00936	SLC6A6	+	FALSE
chr1	28864435	A	G	0.00088	RCC1	+	FALSE

RBP	LMNB1
Knock-Method	siRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR656ZOI
Platform	HiSeq
Pubmed ID	32252787

LMNB1 - Target Gene Network