RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr2	128605225	G	A	0.00401	POLR2D	-	FALSE
chr1	157092835	G	A	0.00595		.	FALSE
chrX	118672561	T	C	2.49155E-08	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	150548887	C	T	0.00014	MCL1	-	FALSE
chr3	197024681	T	C	0.00018	DLG1	-	FALSE
chr2	37431604	A	G	0.00876	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	112266787	G	T	0.00873	FAM212B	-	FALSE
chr1	78029905	T	A	0.00256	ZZZ3	-	FALSE
chr1	76252687	T	C	0.00021	RABGGTB	+	FALSE
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr1	327407	A	G	3.55459E-07		.	FALSE
chr3	156259348	G	A	0.00899	SSR3	-	FALSE	AluSq2	SINE,Alu
chr1	46076468	A	G	0.00069	NASP	+	TRUE	AluSx	SINE,Alu
chr7	100958270	T	C	0.00087	LOC101927746,IFT22	+,-	FALSE
chr12	52710715	G	A	0.00729	KRT83	-	FALSE
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr4	142945451	T	C	0.00585		.	FALSE
chr2	87755101	C	T	0.00431	LINC00152	+	FALSE
chr16	90037828	G	A	0.00029	CENPBD1	-	FALSE	Tigger12	SINE,Alu
chr5	79923990	T	C	0.00812	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	145513112	A	G	0.00080	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	788795	T	G	0.00333	LINC01128	+	FALSE	Charlie19a	SINE,Alu
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr1	11734730	C	T	7.77156E-16	MAD2L2	-	FALSE
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr1	100489571	G	A	1.40531E-05	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr5	37288767	T	C	0.00928		.	FALSE	FLAM_C	SINE,Alu
chr1	28662253	A	G	0.00117	MED18	+	TRUE	AluSq2	SINE,Alu
chr4	109542624	G	A	0.00048	RPL34	+	FALSE	MIRb	SINE,Alu
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr1	236702210	A	G	0.00153	LGALS8	+	FALSE
chr7	143003517	T	A	0.00251	CASP2	+	FALSE	AluY	SINE,Alu
chr5	290324	T	A	0.00729	PDCD6	+	FALSE
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr6	74133914	T	C	0.00014		.	FALSE	AluY	SINE,Alu
chr3	196670095	C	A	1.97381E-07	NCBP2-AS2	+	FALSE
chr20	18468512	T	C	0.00072	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr1	115592820	T	C	0.00107	TSPAN2	-	FALSE
chr1	36068243	T	C	0.00217	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	16812082	A	G	0.00545	CROCCP3	-	FALSE
chr2	172179003	T	C	0.00192	METTL8	-	TRUE	AluY	SINE,Alu
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr10	16554732	T	A	0.00706	PTER	+	FALSE
chr2	37331107	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr15	41591021	A	G	0.00427	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr15	41597437	T	A	0.00217		.	FALSE	AluSz6	SINE,Alu
chr5	126171974	C	T	0.00867	LMNB1	+	FALSE
chr1	179829401	T	C	0.00118	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	113511408	A	G	0.00738		.	FALSE	AluY	SINE,Alu
chr1	1309464	C	T	3.88389E-12	AURKAIP1	-	FALSE
chr3	196670099	A	C	6.06146E-06	NCBP2-AS2	+	FALSE
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr6	13790964	T	C	5.10728E-05	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr2	136541072	T	C	0.00496	UBXN4	+	FALSE
chr5	96350710	G	A	0.00302	LNPEP	+	FALSE
chr5	140240514	A	G	0.00151	PCDHA1,PCDHA2,PCDHA3,PCDHA4,PCDHA5,PCDHA6,PCDHA7,PCDHA8,PCDHA9,PCDHA10	+	FALSE	AluY	SINE,Alu
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr1	25570566	C	G	0.00326	RSRP1	-	FALSE	Alu	SINE,Alu
chr12	72096318	A	G	0.00547	TMEM19	+	TRUE	AluSz6	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr1	116609833	G	A	0.00773	SLC22A15	+	FALSE
chr16	603884	C	G	0.00118	CAPN15	+	FALSE
chr1	789187	C	G	5.07459E-05	LINC01128	+	FALSE
chr19	42375564	A	G	0.00117		.	FALSE	AluSx	SINE,Alu
chr9	46687845	G	C	0.00389	FGF7P6,LOC554249,LOC102724238	+,-	FALSE
chr17	4928416	A	G	0.00941	KIF1C	+	TRUE	AluSz	SINE,Alu
chr2	223807817	A	C	0.00991	ACSL3	+	FALSE	(A)n	SINE,Alu
chr2	28635740	T	C	0.00358	FOSL2	+	FALSE
chr15	91044383	G	T	0.00440	IQGAP1	+	FALSE
chr5	110463621	G	T	0.00786	WDR36	+	FALSE	(T)n	SINE,Alu
chr2	206987738	T	C	0.00859		.	FALSE	AluJb	SINE,Alu
chr1	15736656	A	G	0.00958	EFHD2	+	FALSE
chr1	19542250	T	C	9.94571E-09	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	42266360	T	C	0.00279	TRAK1	+	FALSE
chr17	18111804	T	G	0.00487	ALKBH5	+	FALSE	(TTTTGTT)n	SINE,Alu
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr2	73460316	G	T	0.00368	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr1	150937961	A	C	0.00060	CERS2	-	FALSE	G-rich	SINE,Alu
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	36386884	C	T	0.00024	AGO1	+	FALSE
chr1	245008386	G	C	0.00041		.	FALSE	MER2	SINE,Alu
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr1	26608019	T	A	3.63623E-05		.	FALSE
chr2	37331116	T	C	0.00481		.	FALSE	AluSx1	SINE,Alu
chr4	57801150	A	T	0.00462	REST	+	FALSE
chr3	72426059	T	A	0.00417	RYBP	-	FALSE
chr1	6161107	A	T	0.00218	KCNAB2	+	FALSE
chr2	75118856	T	C	1.43220E-05	HK2	+	FALSE	(ATTTTA)n	SINE,Alu
chr7	100031496	T	A	0.00119	MEPCE	+	FALSE
chr17	41144251	T	G	0.00014	RUNDC1	+	FALSE
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr11	63394020	A	T	0.00175	ATL3	-	FALSE
chr9	115447528	T	C	0.00112	INIP	-	TRUE	AluJb	SINE,Alu
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr1	15015	G	C	0.00809	WASH7P	-	FALSE
chr3	101369192	C	T	0.00761	ZBTB11	-	FALSE
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	77556766	T	A	0.00576	PIGK	-	FALSE
chr1	121133998	T	A	0.00171	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	117645998	A	G	0.00057		.	FALSE
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr1	200521412	G	A	0.00292	KIF14	-	FALSE
chr1	9416568	C	T	0.00061	SPSB1	+	FALSE
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr3	172117459	C	A	0.00791	FNDC3B	+	FALSE
chr2	217366191	T	A	0.00306		.	FALSE
chr1	9328120	A	G	1.75282E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	86364710	T	C	0.00056	PTCD3	+	FALSE
chr5	130537154	A	G	0.00951	LYRM7	+	TRUE	AluSp	SINE,Alu
chr1	113239382	G	A	0.00519	MOV10	+	FALSE
chr4	1193026	A	G	0.00471	SPON2,LOC100130872	-	FALSE	AluSp	SINE,Alu
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr12	9464178	G	A	0.00081	LOC642846	+	FALSE
chr7	65992665	T	C	2.17687E-05		.	FALSE	AluJr	SINE,Alu
chr12	53807911	A	T	0.00355	SP1	+	FALSE
chr3	195964298	A	G	0.00263		.	FALSE
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr7	117825681	A	G	1.90524E-05	LSM8	+	FALSE
chr8	145159705	G	A	0.00383	MAF1	+	FALSE
chr1	36614708	C	T	0.00201	TRAPPC3	-	FALSE
chr1	154323557	C	T	0.00018	ATP8B2	+	FALSE
chr5	52388459	A	T	0.00052	ITGA2	+	FALSE
chr17	73819348	T	C	0.00213	UNK	+	FALSE
chr5	70503890	A	T	0.00188		.	FALSE
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chr1	880052	C	T	0.00231	NOC2L	-	FALSE
chr1	6314743	C	T	6.72719E-05	GPR153	-	FALSE
chr17	1946503	C	G	0.00154	DPH1,OVCA2	+	FALSE
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	19543783	T	C	0.00822	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	94930345	G	A	0.00223	ABCD3	+	FALSE
chr7	137561077	C	A	0.00995	CREB3L2	-	FALSE
chr1	144917546	A	G	0.00614	NBPF20,PDE4DIP	+,-	FALSE
chr17	67539228	G	C	0.00200		.	FALSE
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr1	19542679	T	C	1.36514E-06	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	87200770	C	T	0.00623	SH3GLB1	+	FALSE
chr1	36534086	A	G	0.00157		.	FALSE	FLAM_A	SINE,Alu
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr15	93198678	T	C	0.00064	FAM174B	-	FALSE	(GCCGCT)n	SINE,Alu
chr1	109475629	A	G	0.00305	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	24134721	T	C	0.00113	HMGCL	-	FALSE
chr1	150190851	G	T	0.00339	ANP32E	-	FALSE
chr1	10520764	T	C	0.00542	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	153533813	A	T	0.00451	S100A2	-	FALSE
chr2	118583874	C	G	0.00569	DDX18	+	FALSE
chr1	26449882	A	G	0.00783	PDIK1L	+	FALSE
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr1	145500919	C	T	0.00029	NBPF20,NBPF10,LIX1L	+	FALSE
chr2	37327677	T	C	0.00019		.	FALSE
chr3	49396751	T	C	0.00000	RHOA	-	FALSE
chr11	18552273	C	T	0.00243		.	FALSE
chr3	15112501	T	C	2.98131E-05	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	11783295	G	A	0.00977		.	FALSE	MER58B	SINE,Alu
chr6	32789807	C	T	0.00281		.	FALSE
chr1	19238556	G	A	6.03260E-07	IFFO2	-	FALSE
chr1	150548883	A	C	0.00255	MCL1	-	FALSE
chr3	52084404	A	T	0.00032	DUSP7	-	FALSE	(A)n	SINE,Alu
chr1	119427687	G	C	0.00823	TBX15	-	FALSE
chr2	37331077	T	C	0.00937		.	FALSE	AluSx1	SINE,Alu
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr1	111969752	A	G	0.00531	OVGP1	-	FALSE
chr15	63363388	G	T	0.00096	TPM1	+	FALSE
chr5	134670071	A	T	0.00405	C5orf66,H2AFY	+,-	FALSE
chrX	9863112	A	G	0.00498	SHROOM2	+	FALSE
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	36067760	T	C	0.00258	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	179973026	T	C	0.00210	SESTD1	-	FALSE
chr3	15114421	T	C	0.00353	RBSN	-	TRUE	AluY	SINE,Alu
chr2	201842492	T	C	0.00107	FAM126B	-	TRUE	AluJb	SINE,Alu
chr2	37328034	T	C	0.00047		.	FALSE
chr1	211921702	T	C	0.00014	LPGAT1	-	FALSE
chr1	78483452	C	T	0.00094	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr7	99917927	T	C	0.00320	SPDYE3	+	FALSE	AluJb	SINE,Alu
chr1	246829616	T	C	0.00029	CNST	+	FALSE
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr10	89004545	T	C	0.00192	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr1	156044222	G	T	0.00758	MEX3A	-	FALSE	(T)n	SINE,Alu
chr1	206516261	C	T	0.00179	SRGAP2	+	FALSE
chr1	120163831	A	G	0.00706	ZNF697	-	FALSE
chr1	23519504	T	A	3.21384E-05	HTR1D	-	FALSE
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr1	200827638	A	G	0.00665	CAMSAP2	+	FALSE
chr1	33149373	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	24019977	A	C	0.00281	NR1D2	+	FALSE
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr1	45474230	G	A	0.00012	HECTD3	-	FALSE
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr4	76568479	T	A	0.00825	G3BP2	-	FALSE
chr5	130536847	A	G	0.00917	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr1	220231963	T	C	0.00343	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr5	40832550	C	T	7.98859E-06	RPL37	-	FALSE
chr1	38326704	T	C	0.00328	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	10221287	A	G	0.00961	UBE4B	+	FALSE
chr1	67874697	T	C	0.00022	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	86049392	C	A	0.00322	CYR61	+	FALSE
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr2	128620436	C	T	0.00342	AMMECR1L	-	FALSE
chr2	173461888	A	G	0.00110	PDK1	+	TRUE	AluJr	SINE,Alu
chr1	110551680	C	T	0.00415	AHCYL1	+	FALSE
chr1	1337841	C	A	0.00186	MRPL20	-	FALSE
chr1	144606963	G	T	0.00080	NBPF20	+	FALSE
chr1	16891365	G	A	0.00475	NBPF1	-	FALSE
chr1	16577794	C	T	0.00805	FBXO42	-	FALSE
chr3	45721891	A	G	0.00417	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	31732603	A	C	0.00164	SNRNP40	-	FALSE
chr1	246714587	G	A	0.00150	TFB2M	-	FALSE
chr3	9848198	G	T	0.00295	ARPC4,ARPC4-TTLL3	+	FALSE	(T)n	SINE,Alu
chr5	179382563	T	C	0.00704	RNF130	-	FALSE
chr1	15755248	C	T	0.00405	EFHD2	+	FALSE
chr1	6283306	T	C	2.62084E-05	ICMT	-	TRUE	AluSx3	SINE,Alu
chr6	158613395	C	A	0.00031	GTF2H5	+	FALSE
chr17	7123232	C	G	0.00250	DLG4,ACADVL	+,-	FALSE
chr4	6689813	C	A	0.00141		.	FALSE	L2b	SINE,Alu
chrX	24095325	A	G	7.48023E-10	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr4	663908	A	G	0.00320	PDE6B	+	FALSE
chr1	28662186	A	G	0.00774	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	67874696	T	C	0.00420	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	145512925	A	G	0.00238	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	13942885	C	A	0.00038	PDPN	+	FALSE
chr2	206988075	G	A	0.00672	NDUFS1	-	FALSE
chr1	205687213	T	A	0.00950	NUCKS1	-	FALSE
chr1	230975454	A	G	0.00438	C1orf198	-	FALSE

RBP	SBDS
Knock-Method	shRNA
RBP Family	SBDS_C
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR219DXZ
Platform	HiSeq
Pubmed ID	32252787

SBDS - Target Gene Network