RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	10519932	T	C	5.00916E-05		.	FALSE	AluJr	SINE,Alu
chr2	103333653	T	C	0.00426	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	19542401	T	C	0.00071	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	183476685	G	A	0.00032	YEATS2	+	FALSE
chr17	56049824	T	C	5.91767E-06	VEZF1	-	TRUE
chr1	28661653	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu
chr1	145116141	G	A	0.00266	NBPF20,SEC22B	+	FALSE
chr8	128944719	A	T	0.00093	PVT1	+	FALSE
chr1	3395039	G	A	0.00027	ARHGEF16	+	FALSE
chr1	145513125	A	G	0.00274	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr1	10517567	T	C	9.16527E-06		.	FALSE	AluSx1	SINE,Alu
chr3	16299968	G	A	0.00470	DPH3	-	FALSE
chr1	32385070	T	A	0.00593	PTP4A2	-	FALSE
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr1	10521200	T	C	3.54723E-07	DFFA	-	TRUE	AluY	SINE,Alu
chr10	102121601	A	G	0.00000	SCD	+	TRUE	MLT1L	SINE,Alu
chr17	61909370	G	A	0.00152	PSMC5	+	FALSE
chr3	42266346	A	G	0.00824	TRAK1	+	FALSE
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr1	28608338	A	G	0.00341	SESN2	+	FALSE
chr7	44618353	T	C	0.00168	TMED4	-	TRUE	AluSq2	SINE,Alu
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr3	155660833	A	G	0.00020		.	FALSE	AluSz	SINE,Alu
chr4	165998958	T	C	0.00021	TMEM192	-	TRUE	Alu	SINE,Alu
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr1	10521162	T	C	0.00911	DFFA	-	TRUE	AluY	SINE,Alu
chr2	73460314	C	T	0.00333	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr20	57603730	A	T	0.00101		.	FALSE
chr5	128430757	T	C	0.00338	ISOC1	+	FALSE
chr1	9160958	T	C	3.87385E-05		.	FALSE	AluJb	SINE,Alu
chr4	6675519	A	C	0.00064	LOC105374366	-	FALSE
chr3	150261569	T	G	0.00173	SERP1	-	FALSE
chr1	246714587	G	A	0.00023	TFB2M	-	FALSE
chr1	16912014	A	C	0.00702	NBPF1	-	FALSE
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr12	98943149	A	G	0.00019	TMPO	+	TRUE	AluSz	SINE,Alu
chr19	16662827	T	C	0.00218	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr3	50296329	G	A	0.00884	GNAI2	+	FALSE
chr1	114940246	C	A	0.00628	TRIM33	-	FALSE
chr1	65330637	C	T	0.00047	JAK1	-	FALSE
chr1	87328400	C	T	0.00755	SEP15	-	FALSE
chr15	38643574	T	C	0.00455	SPRED1	+	FALSE
chr5	85916592	G	A	0.00018		.	FALSE
chr2	191366707	A	G	0.00900	MFSD6	+	FALSE
chr1	155695968	A	G	0.00439	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	28662105	A	G	0.00846	MED18	+	TRUE	AluSq2	SINE,Alu
chr6	74134869	T	C	0.00024	MB21D1	-	TRUE	AluSz	SINE,Alu
chr1	101541172	A	G	6.48917E-05	LOC102606465	+	TRUE	MLT1K	SINE,Alu
chr1	6283306	T	C	0.00047	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	203839213	T	A	0.00800	SNRPE	+	FALSE
chr1	243289448	G	A	0.00036	CEP170	-	FALSE
chr3	52873072	A	C	0.00233	TMEM110-MUSTN1,TMEM110	-	FALSE
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr1	55541174	A	G	0.00038	USP24	-	FALSE
chr1	16891333	C	T	0.00011	NBPF1	-	FALSE
chr1	108728562	A	T	0.00228	SLC25A24	-	FALSE
chr1	19542458	T	C	1.01966E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	46077268	A	G	0.00012	NASP	+	TRUE	AluSc8	SINE,Alu
chr5	133918133	A	C	0.00413	JADE2	+	FALSE
chr1	67874697	T	C	0.00010	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	37075013	T	A	0.00754	STRN	-	FALSE
chr1	52520866	C	T	0.00195	TXNDC12	-	FALSE
chr1	16841972	G	A	1.76809E-05		.	FALSE	MER41E	SINE,Alu
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr4	128756737	A	G	8.66859E-06		.	FALSE	AluSx	SINE,Alu
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr6	42857542	T	A	0.00029	RPL7L1	+	FALSE	MIRc	SINE,Alu
chr9	137330709	G	T	0.00965	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr1	67874696	T	C	0.00012	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr1	31905882	A	C	0.00132	SERINC2	+	FALSE
chr1	162497738	G	C	0.00390	UHMK1	+	FALSE
chr3	136667405	T	C	0.00190	NCK1	+	FALSE
chr19	53914819	A	G	5.13713E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr3	107526033	T	A	0.00056	BBX	+	FALSE
chr3	101576175	T	C	0.00246	NFKBIZ	+	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr7	65992794	T	C	0.00820		.	FALSE	AluJr	SINE,Alu
chr22	18571457	A	G	0.00025	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	48764419	C	T	0.00478	SPATA6	-	FALSE
chr1	1419743	A	G	0.00848	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	10520378	T	C	0.00895		.	FALSE	AluSx1	SINE,Alu
chr5	149364144	A	G	0.00014	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr19	18475356	A	G	0.00360	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	8045340	C	A	0.00285	PARK7	+	FALSE
chr2	9629290	T	G	0.00180	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr3	195678003	C	G	0.00146		.	FALSE	L4_A_Mam	SINE,Alu
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr1	9331101	A	G	0.00026	H6PD	+	FALSE	AluSx	SINE,Alu
chr1	100316589	A	G	0.00481	AGL	+	FALSE
chr1	39305002	A	T	0.00089	RRAGC	-	FALSE
chr4	7762356	G	A	3.36293E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	100550370	T	A	0.00308	SASS6	-	FALSE
chr1	9160900	T	C	0.00542		.	FALSE	AluJb	SINE,Alu
chr3	41281388	T	G	0.00720	CTNNB1	+	FALSE
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr16	10624967	T	C	0.00013	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	16957414	C	T	0.00116		.	FALSE
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr3	48787715	T	C	0.00863	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr1	36067925	T	C	2.33961E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10520767	T	C	4.75457E-05	DFFA	-	TRUE	AluSc8	SINE,Alu
chr2	37230734	C	T	0.00025	HEATR5B	-	FALSE
chr1	35644503	T	A	0.00551	SFPQ	-	FALSE
chr2	85132779	T	G	1.13350E-06	TMSB10	+	FALSE
chr1	31905888	C	A	0.00667	SERINC2	+	FALSE
chr1	145281633	C	A	0.00510	NBPF20,NOTCH2NL	+	FALSE
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr3	33877626	G	A	2.14228E-08	PDCD6IP	+	FALSE
chr17	57281060	A	G	0.00026	PRR11	+	TRUE	AluSz	SINE,Alu
chr17	1684352	T	C	0.00793	SMYD4	-	TRUE	AluSx1	SINE,Alu
chr1	201846630	C	A	0.00212	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	121115958	T	C	0.00147	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr5	149013587	G	A	0.00102	ARHGEF37	+	FALSE	L2d	SINE,Alu
chr1	61922059	C	A	0.00132	NFIA	+	FALSE	(A)n	SINE,Alu
chr3	155660742	A	G	0.00504		.	FALSE	AluSz	SINE,Alu
chr12	96259951	G	A	0.00328	SNRPF	+	FALSE
chr1	3545194	C	G	0.00044	TPRG1L	+	FALSE
chr1	6283260	T	C	0.00054	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	220037666	A	G	0.00796	CNPPD1	-	FALSE
chr1	179042551	A	G	0.00336	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	179326882	A	G	0.00020	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	3654747	C	A	0.00691	TP73-AS1	-	FALSE
chr1	45976259	A	C	0.00015	MMACHC	+	FALSE
chr2	28639641	C	G	0.00431		.	FALSE
chr1	28662186	A	G	0.00774	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	789232	C	T	0.00335	LINC01128	+	FALSE
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	153520954	C	T	0.00910	LOC101928034,S100A3	+,-	FALSE
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr1	10518591	A	T	0.00030		.	FALSE
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr5	177311217	T	C	0.00840	LOC728554	+	FALSE	A-rich	SINE,Alu
chr1	143915879	A	C	0.00097		.	FALSE
chr1	10521130	T	C	1.15946E-05	DFFA	-	TRUE	AluY	SINE,Alu
chr1	200521412	G	A	0.00110	KIF14	-	FALSE
chr1	36602202	T	C	0.00122	TRAPPC3	-	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	9328106	A	G	0.00394	H6PD	+	TRUE	AluJr	SINE,Alu
chr5	176863519	G	C	0.00567	GRK6	+	FALSE
chr3	156258255	T	C	0.00059	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr4	17629934	T	C	0.00178		.	FALSE	MER90	SINE,Alu
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr1	204524846	A	G	0.00940	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr1	38275432	G	T	0.00536	MTF1	-	FALSE
chr4	9998493	A	G	5.94150E-05	SLC2A9	-	FALSE
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr4	120219239	T	A	0.00707	C4orf3	-	FALSE
chr14	31916792	C	T	3.89824E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	16926980	T	C	0.00062	NBPF1	-	FALSE
chr1	10521254	T	C	0.00023	DFFA	-	TRUE	AluY	SINE,Alu
chr2	3609064	G	A	0.00614	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	16901668	T	C	0.00177	NBPF1	-	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr1	179811936	T	C	0.00229	TOR1AIP2	-	FALSE	AluY	SINE,Alu
chr1	242012149	C	T	0.00510	EXO1	+	FALSE
chr3	48787640	T	C	0.00320	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr7	156763332	A	G	0.00090	NOM1	+	TRUE	AluSx	SINE,Alu
chr3	52028445	C	T	0.00934	RPL29	-	FALSE
chr6	34845648	T	C	0.00790	TAF11	-	FALSE
chr16	2821989	C	T	0.00709	TCEB2	-	FALSE
chr4	89180334	T	C	0.00224	PPM1K	-	TRUE	AluSx4	SINE,Alu
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr19	49619561	T	C	2.39173E-05	LIN7B	+	FALSE
chr2	152132130	A	G	6.12116E-05	NMI	-	FALSE
chr3	45721990	A	G	0.00779	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	3730332	T	C	0.00025	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	10519048	T	C	0.00637		.	FALSE	AluSx3	SINE,Alu
chr2	37328087	T	C	0.00335		.	FALSE
chr1	45110404	C	T	0.00230	RNF220	+	FALSE
chr2	37331578	T	C	0.00675		.	FALSE	AluJb	SINE,Alu
chr1	87213174	T	G	0.00081	SH3GLB1	+	FALSE
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	40539203	A	T	0.00179	PPT1	-	FALSE
chr1	1634860	G	T	0.00659	CDK11B,CDK11A	-	FALSE
chr1	6159719	C	T	4.79205E-09	KCNAB2	+	FALSE
chr1	206579936	A	G	0.00747	SRGAP2	+	FALSE
chr1	17298140	C	G	0.00584	CROCC	+	FALSE
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr2	113334178	A	T	0.00654	POLR1B	+	FALSE	L1MA10	SINE,Alu
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr3	45960560	T	A	0.00201	FYCO1	-	FALSE
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr2	128603119	T	C	0.00340		.	FALSE	AluSp	SINE,Alu
chr1	36068370	T	C	3.60077E-09	PSMB2	-	TRUE	AluSc	SINE,Alu
chr17	42877584	T	C	0.00489	GJC1	-	TRUE	AluSg	SINE,Alu
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr3	39453610	C	T	0.00025	RPSA	+	FALSE
chr2	206987205	T	C	0.00039		.	FALSE	AluSx	SINE,Alu
chr10	12292344	A	G	0.00434	CDC123	+	FALSE
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr4	103809328	G	T	0.00284	CISD2,SLC9B1	+,-	FALSE
chr1	33148789	A	G	0.00568	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr2	128601583	T	C	0.00550		.	FALSE	AluJr	SINE,Alu
chr9	89626918	A	G	0.00048	LOC440173	-	FALSE
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr1	15755550	A	C	0.00969	EFHD2	+	FALSE
chr1	16254872	C	A	1.11022E-16	SPEN	+	FALSE
chr4	76568481	A	T	0.00744	G3BP2	-	FALSE	(TA)n	SINE,Alu
chr1	9328120	A	G	0.00128	H6PD	+	TRUE	AluJr	SINE,Alu
chr3	185826740	T	G	0.00041	ETV5	-	FALSE
chrX	2824894	T	C	0.00770	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	9910357	A	T	0.00056	CTNNBIP1	-	FALSE
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr1	9160989	T	C	0.00092		.	FALSE	AluJb	SINE,Alu
chr1	25890189	A	G	0.00072	LDLRAP1	+	FALSE
chr3	33909024	A	T	0.00134	PDCD6IP	+	FALSE
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr19	58372763	A	G	0.00479	ZNF587	+	TRUE	AluSx	SINE,Alu
chr5	95222277	C	T	0.00599	ELL2	-	FALSE
chr19	11256672	T	C	9.28647E-11	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr7	137561076	A	G	0.00488	CREB3L2	-	FALSE

RBP	ADAR
Knock-Method	shRNA
RBP Family	A_deamin
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR164TLB
Platform	HiSeq
Pubmed ID	32252787

ADAR - Target Gene Network