Dataset Overview
RBP
ZRANB2
Knock-Method
shRNA
RBP Family
zf-RanBP
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR081QQH
Platform
HiSeq
Pubmed ID
32252787
ZRANB2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of ZRANB2
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
9.32
16.32
0.84201
5.38675E-19
1.53563E-17
A1CF
29.34
27.76
0.23146
0.00011
0.00041
AAAS
28.52
20.3
-0.50344
2.52806E-09
2.20463E-08
AAMDC
19.44
14.18
-0.34648
0.02738
0.05552
AAR2
19.08
15.27
-0.28200
0.00047
0.00155
AARS
40.96
46.97
0.22829
7.96904E-05
0.00031
AARSD1
13.23
10.05
-0.36191
0.00748
0.01796
AASDHPPT
15.99
19.7
0.21282
0.00537
0.01335
AASS
9.93
5.83
-0.76752
1.46400E-13
2.25555E-12
AATK
2.01
2.16
0.44509
0.00326
0.00862
Showing 1 to 10 of 7,080 entries
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Function Analysis of Target Genes of ZRANB2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101576820_101576968_101572774_101572901_101577064_101577241
0.00000
-0.251
DataSet_01_279
View details
ABCC2
101576820_101576911_101572774_101572901_101577064_101577241
0.00026
-0.143
DataSet_01_279
View details
ABCC2
101576820_101576953_101572774_101572901_101577064_101577241
0.00773
-0.106
DataSet_01_279
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00316
-0.141
DataSet_01_279
View details
AC007246.3
39785122_39785187_39745723_39745851_39826505_39826679
0.00715
0.251
DataSet_01_279
View details
ACAA1
38173086_38173129_38170780_38170879_38173416_38174043
0.00645
-0.078
DataSet_01_279
View details
ACOX1
73969705_73969866_73956295_73956456_73974614_73974774
0.00250
-0.233
DataSet_01_279
View details
ACSL3
223765391_223765498_223752547_223752606_223773450_223773754
0.00503
-0.08
DataSet_01_279
View details
AFP
74313330_74313393_74309063_74309161_74315051_74315184
0.00000
0.022
DataSet_01_279
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AFP
74313178_74313393_74309063_74309161_74315051_74315184
0.00001
0.012
DataSet_01_279
View details
Showing 1 to 10 of 276 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52601621_52601752_52603747_52603882_52595833_52596072
0.00000
-0.296
DataSet_01_279
View details
AC022816.2
14280600_14280738_14285108_14285253_14277455_14277545
0.00095
0.33
DataSet_01_279
View details
ACAA1
38169276_38169357_38170780_38170879_38168000_38168191
0.00236
-0.097
DataSet_01_279
View details
ACAT1
108005868_108005969_108009624_108009768_108004947_108005043
0.00000
-0.171
DataSet_01_279
View details
ACOX1
73956295_73956456_73969705_73969866_73953539_73953647
0.00185
-0.212
DataSet_01_279
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00085
0.085
DataSet_01_279
View details
AFP
74310709_74310839_74313330_74313393_74309063_74309161
0.00325
-0.075
DataSet_01_279
View details
AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00000
0.065
DataSet_01_279
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AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00000
0.021
DataSet_01_279
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AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00000
0.012
DataSet_01_279
View details
Showing 1 to 10 of 149 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC022816.2
14285108_14285257_14285108_14285253_14285334_14285429
0.00941
0.578
DataSet_01_279
View details
ACP1
271892_272065_271892_271939_272191_272305
0.00047
-0.135
DataSet_01_279
View details
ACSS2
33462744_33462940_33462744_33462930_33470596_33470792
0.00001
-0.44
DataSet_01_279
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AHSA2
61411846_61412059_61411846_61411935_61412636_61412753
0.00958
0.028
DataSet_01_279
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AL163636.6
21152745_21152917_21152745_21152855_21167513_21168735
0.00198
-0.03
DataSet_01_279
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CARS
3023191_3023283_3023199_3023283_3022159_3022478
0.00743
-0.141
DataSet_01_279
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DCAF11
24584751_24584958_24584751_24584935_24586180_24586253
0.00665
-0.103
DataSet_01_279
View details
DHRS2
24110883_24110988_24110883_24110947_24112360_24112428
0.00876
-0.568
DataSet_01_279
View details
EIF3K
39109835_39109967_39109835_39109957_39110976_39111075
0.00242
0.033
DataSet_01_279
View details
EIF4G2
10823207_10823756_10823595_10823756_10822496_10822634
0.00077
0.083
DataSet_01_279
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Showing 1 to 10 of 37 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00019
0.022
DataSet_01_279
View details
APOA2
161192707_161192820_161192707_161192784_161193139_161193215
0.00213
0.056
DataSet_01_279
View details
APOL1
36650943_36651045_36650982_36651045_36649178_36649265
0.00004
0.069
DataSet_01_279
View details
ASGR1
7081812_7081990_7081812_7081907_7082508_7082728
0.00557
0.033
DataSet_01_279
View details
ATXN2L
28843507_28843720_28843525_28843720_28842282_28842393
0.00401
0.048
DataSet_01_279
View details
AUP1
74754067_74754279_74754067_74754248_74754374_74754490
0.00087
-0.139
DataSet_01_279
View details
BAP1
52436794_52436956_52436794_52436887_52437153_52437314
0.00507
0.056
DataSet_01_279
View details
BSDC1
32849430_32849649_32849430_32849598_32852379_32852496
0.00425
0.093
DataSet_01_279
View details
C1orf63
25570040_25570715_25570040_25570124_25571640_25571792
0.00290
-0.281
DataSet_01_279
View details
CCNL2
1326145_1328183_1326145_1326245_1328775_1328840
0.00000
-0.111
DataSet_01_279
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9220307_9220820_9220307_9220435_9220778_9220820
0.00513
0.008
DataSet_01_279
View details
ANKZF1
220098854_220100034_220098854_220099010_220099547_220100034
0.00834
0.143
DataSet_01_279
View details
APOA1
116708060_116708330_116708060_116708123_116708234_116708330
0.00829
-0.044
DataSet_01_279
View details
ARPC3
110873914_110874488_110873914_110874009_110874361_110874488
0.00289
-0.011
DataSet_01_279
View details
ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00000
-0.051
DataSet_01_279
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CCNG1
162864576_162864810_162864576_162864670_162864770_162864810
0.00014
-0.152
DataSet_01_279
View details
CDC37
10505903_10506219_10505903_10506019_10506110_10506219
0.00219
0.064
DataSet_01_279
View details
CDK5RAP3
46052879_46053379_46052879_46053019_46053234_46053379
0.00802
-0.103
DataSet_01_279
View details
CDK5RAP3
46048487_46048773_46048487_46048518_46048727_46048773
0.00777
0.107
DataSet_01_279
View details
CLU
27462440_27462852_27462440_27462586_27462688_27462852
0.00012
0.02
DataSet_01_279
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
65897981
G
A
0.00653
LEPR,LEPROT
+
FALSE
chr1
143189486
A
G
0.00122
LOC102723769
-
FALSE
chr1
165877575
A
C
0.00675
UCK2
+
FALSE
chr1
19934758
C
G
1.75422E-05
MINOS1,MINOS1-NBL1,RPS14P3
+
FALSE
chr1
71531596
A
G
0.00016
ZRANB2-AS1,ZRANB2
+,-
FALSE
chr1
155829140
C
G
0.00889
GON4L
-
FALSE
chr1
117530477
G
A
0.00223
PTGFRN
+
FALSE
chr1
1593750
A
G
0.00191
CDK11B,SLC35E2B
-
FALSE
chr1
204521580
A
G
0.00469
MDM4
+
TRUE
AluSg
SINE,Alu
chr1
145688671
A
T
0.00822
NBPF20,NBPF10,RNF115
+
FALSE
Showing 1 to 10 of 347 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression