RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	117648345	A	G	0.00739		.	FALSE
chr1	145689537	A	G	0.00593	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	58112440	A	G	8.00661E-07	FLNB	+	FALSE
chr7	44842099	A	G	1.82502E-05	PPIA	+	TRUE
chr1	145282600	A	C	0.00391	NBPF20,NOTCH2NL	+	FALSE	MER126	SINE,Alu
chr1	110912873	T	C	0.00116	SLC16A4	-	FALSE
chr8	12286546	A	G	0.00400	FAM86B2	-	FALSE
chr2	71411975	A	C	0.00463	PAIP2B	-	FALSE
chr1	153599390	T	C	0.00135	S100A13	-	FALSE
chr1	117945042	G	A	0.00150	MAN1A2	+	FALSE
chr1	46077268	A	G	0.00484	NASP	+	TRUE	AluSc8	SINE,Alu
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr3	48787633	T	C	0.00287	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	23636030	A	T	0.00067	HNRNPR	-	FALSE
chr1	27879798	A	G	0.00899	AHDC1	-	FALSE	MIRb	SINE,Alu
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr7	21941589	T	A	0.00535	CDCA7L	-	FALSE
chr1	179042544	A	G	0.00722	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	144932197	T	A	0.00430	NBPF20,PDE4DIP	+,-	FALSE
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr1	10516656	C	T	0.00808		.	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr6	32121594	T	C	0.00104		.	FALSE
chr1	1252662	T	C	0.00136	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr15	41590972	A	G	2.40282E-05	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	217366195	C	A	0.00929		.	FALSE
chr2	232319611	A	T	3.84700E-07	NCL	-	FALSE
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	21101369	T	C	0.00028	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr2	178406769	A	T	0.00416	AGPS	+	FALSE
chr1	121115958	T	C	0.00818	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr1	19585917	T	A	0.00308	MRTO4	+	FALSE	AluJr	SINE,Alu
chr1	144932220	G	T	0.00449	NBPF20,PDE4DIP	+,-	FALSE
chr10	119766673	T	G	0.00082	RAB11FIP2	-	FALSE
chr1	110136458	A	G	0.00136	GNAI3	+	FALSE
chrX	2824916	T	C	6.31541E-06	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	145511998	A	G	0.00715	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	16945570	A	G	0.00251	CROCCP2	-	FALSE
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr12	123346999	T	A	0.00838	HIP1R	+	FALSE
chr2	202032107	A	G	0.00401	CFLAR	+	TRUE	AluJo	SINE,Alu
chr1	87213188	C	A	0.00236	SH3GLB1	+	FALSE
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr16	1819020	A	T	0.00258	MAPK8IP3	+	FALSE
chr19	9672943	T	C	1.63385E-06		.	FALSE	AluSx3	SINE,Alu
chr3	15113783	T	C	0.00127	RBSN	-	FALSE	AluSz6	SINE,Alu
chr19	42375586	A	G	0.00404		.	FALSE	AluSx	SINE,Alu
chr1	144932199	C	A	0.00584	NBPF20,PDE4DIP	+,-	FALSE
chr1	10437995	G	A	0.00427	KIF1B	+	FALSE	AluSg	SINE,Alu
chr1	709591	G	A	0.00226	LOC100288069	-	FALSE
chr1	16958064	A	G	0.00240		.	FALSE
chr1	15668319	G	A	0.00489	FHAD1	+	FALSE
chr5	52251222	G	T	0.00808		.	FALSE	(GATA)n	SINE,Alu
chr2	202152108	A	G	0.00018	CASP8	+	FALSE	AluJb	SINE,Alu
chr1	1595500	T	C	0.00482	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr2	242615532	C	A	0.00603	DTYMK	-	FALSE
chr12	7175047	A	G	0.00634	C1S	+	FALSE
chr2	39212567	T	G	0.00546	SOS1	-	FALSE
chr2	217366197	T	A	0.00018		.	FALSE
chr15	90764219	G	A	0.00193	SEMA4B	+	FALSE
chr5	180663939	C	A	0.00190	RACK1	-	FALSE
chr9	132268359	A	G	0.00436	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	16973198	G	A	0.00514	MST1P2	+	FALSE
chr4	17802890	T	C	0.00303	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	197611048	A	G	0.00064		.	FALSE	AluSx1	SINE,Alu
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr8	11700373	T	C	0.00212	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	148561089	T	C	0.00011	NBPF15	+	FALSE
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr1	11979807	C	A	0.00574	KIAA2013	-	FALSE
chr1	11782935	A	G	0.00067		.	FALSE	AluSx	SINE,Alu
chr1	95363041	C	T	0.00105	CNN3	-	FALSE
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr1	184663537	A	C	0.00256	EDEM3	-	FALSE
chr1	16928622	C	A	0.00197	NBPF1	-	FALSE
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr2	187544218	T	G	0.00796	ITGAV	+	FALSE
chr4	101946461	G	T	0.00442	PPP3CA	-	FALSE	(T)n	SINE,Alu
chr16	719933	T	C	0.00067	RHOT2	+	FALSE
chr12	10311392	T	C	0.00177	OLR1	-	FALSE
chr9	133778117	C	T	0.00739	FIBCD1	-	FALSE
chr1	97144886	A	G	0.00078		.	FALSE
chr2	37331065	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr7	128142833	A	G	6.82570E-05	METTL2B	+	TRUE	AluSx1	SINE,Alu
chr1	183105534	T	C	0.00125	LAMC1	+	FALSE
chr3	172117459	C	A	0.00791	FNDC3B	+	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr1	67896025	G	A	5.77574E-06	SERBP1	-	FALSE
chr10	79800439	A	T	0.00380	RPS24	+	FALSE
chr1	67874696	T	C	0.00420	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	1419775	A	G	0.00090	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	144053661	T	G	0.00232		.	FALSE
chr1	38326643	T	C	0.00458	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	114938247	G	A	0.00197	TRIM33	-	FALSE
chr1	120166681	G	A	0.00879	ZNF697	-	FALSE
chr1	9645101	C	T	0.00726		.	FALSE	(ATATTC)n	SINE,Alu
chr1	146495574	C	T	0.00085	LOC728989	-	FALSE
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr1	87573325	C	T	0.00121	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr9	86584220	G	A	0.00318	HNRNPK	-	FALSE
chr1	150969257	T	C	0.00400		.	FALSE	AluSq2	SINE,Alu
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr4	39550978	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	47716039	A	G	0.00863	STIL	-	FALSE
chr2	175711942	C	T	8.43847E-05	CHN1	-	FALSE
chr2	68402797	T	A	0.00656	PNO1	+	FALSE
chr1	19653870	T	C	0.00477	PQLC2	+	FALSE
chr1	19981865	A	G	0.00213	MINOS1-NBL1,NBL1	+	FALSE
chr1	114519351	T	G	0.00773	HIPK1	+	FALSE
chr2	85548076	A	T	0.00682	TGOLN2	-	FALSE
chr7	2274209	T	C	0.00578	MRM2	-	FALSE	AluJr	SINE,Alu
chr2	136542427	T	A	0.00075	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr12	56510702	T	C	0.00052	RPL41	+	FALSE
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr15	90820083	A	G	4.07036E-06		.	FALSE	AluY	SINE,Alu
chr1	182568729	C	G	0.00012	RGS16	-	FALSE
chr6	158505088	A	G	0.00083	SYNJ2	+	FALSE
chr1	2160436	C	T	0.00488	SKI	+	FALSE	(CGC)n	SINE,Alu
chr1	193222534	G	T	0.00504	CDC73	+	FALSE	(TGT)n	SINE,Alu
chr1	109817245	C	T	2.70011E-05	CELSR2	+	FALSE
chr1	229795330	T	C	0.00334	URB2	+	FALSE
chr4	39551008	T	C	0.00106	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	16932144	A	C	1.90883E-05	NBPF1	-	FALSE
chr7	128143512	A	G	0.00984		.	FALSE	AluJr4	SINE,Alu
chr3	99516879	A	T	0.00667	MIR548G	-	FALSE
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr10	65380587	A	G	0.00344	REEP3	+	FALSE
chr6	24780892	A	C	0.00246	GMNN	+	FALSE
chr2	242384368	G	A	0.00031	FARP2	+	FALSE	AluJr	SINE,Alu
chr2	155555207	A	C	0.00073	KCNJ3	+	FALSE
chr1	28573293	G	A	0.00059		.	FALSE
chr1	117530273	A	G	0.00270	PTGFRN	+	FALSE
chr20	25427885	A	G	0.00455	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	10520099	T	C	5.82547E-06		.	FALSE	AluSx	SINE,Alu
chr1	242011534	A	G	0.00248	EXO1	+	FALSE
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr1	36068276	T	C	0.00339	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	145116027	T	C	1.71852E-07	NBPF20,SEC22B	+	FALSE
chr1	16889985	T	C	0.00583	NBPF1	-	FALSE
chr1	179044169	A	G	0.00039	FAM20B	+	TRUE	AluSx	SINE,Alu
chr6	3022544	T	C	7.02821E-06	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr2	206987096	T	C	0.00795		.	FALSE	AluSx	SINE,Alu
chr9	85861561	C	T	0.00287	FRMD3	-	FALSE	(TC)n	SINE,Alu
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr16	10623544	T	C	2.29348E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr3	181430454	G	A	0.00577	SOX2-OT,SOX2	+	FALSE
chr1	19542456	T	C	0.00186	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	145499276	C	T	0.00581	NBPF20,NBPF10,LIX1L	+	FALSE
chr10	75008731	T	C	8.90942E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr1	144521102	T	A	0.00119	NBPF20	+	FALSE
chr1	101541172	A	G	6.48917E-05	LOC102606465	+	TRUE	MLT1K	SINE,Alu
chr22	18572742	A	G	8.48972E-05	PEX26	+	TRUE	AluYf1	SINE,Alu
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr2	171850175	G	T	0.00054	TLK1	-	FALSE
chr1	160967856	T	C	0.00491	F11R	-	TRUE	AluSp	SINE,Alu
chr1	115299504	G	T	0.00067	CSDE1	-	FALSE
chr2	86731651	G	A	0.00378	CHMP3,RNF103-CHMP3	-	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	109865630	C	T	0.00647	SORT1	-	FALSE
chr1	19447843	C	G	0.00345	UBR4	-	FALSE
chr2	216903621	T	C	0.00611	PECR	-	TRUE	AluSx3	SINE,Alu
chr1	10520258	T	C	0.00396		.	FALSE	AluSx	SINE,Alu
chr2	61416407	G	T	0.00041	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	220232138	T	C	0.00011	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	36068231	T	C	0.00935	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	99055940	T	C	0.00289	ATP5J2-PTCD1,ATP5J2	-	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	38937372	T	C	0.00388	FAM114A1	+	FALSE
chr2	67630980	G	A	0.00225	ETAA1	+	FALSE
chr1	36067811	T	C	0.00467	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	113287200	C	T	0.00087	TTL	+	FALSE	(T)n	SINE,Alu
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr2	223807974	A	T	0.00593	ACSL3	+	FALSE
chr1	36535403	A	G	0.00320		.	FALSE	AluSx1	SINE,Alu
chr1	116943511	T	C	0.00236	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	16933626	G	A	0.00556	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	65898873	G	C	0.00530	LEPR,LEPROT	+	FALSE
chr1	179852074	T	C	0.00338	TOR1AIP1	+	FALSE
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr3	99517485	C	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	53289852	A	G	0.00894	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	55199563	G	T	0.00172	RTN4	-	FALSE
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr3	197400501	C	G	0.00011	RUBCN	-	FALSE
chr2	31557839	G	T	0.00014	XDH	-	FALSE	AluJr	SINE,Alu
chr8	143352206	T	C	0.00500	TSNARE1	-	FALSE
chr1	46075168	C	A	0.00155	NASP	+	FALSE	A-rich	SINE,Alu
chr19	39440966	T	C	0.00011	FBXO17	-	FALSE
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr6	29910583	C	T	4.95604E-05		.	FALSE
chr15	41590287	A	G	0.00568	OIP5-AS1	+	FALSE
chr1	2160988	G	A	0.00137	SKI	+	FALSE
chr10	89623863	G	C	0.00107	PTEN	+	FALSE	(CGG)n	SINE,Alu
chrX	77084001	T	C	1.05736E-07	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	110136683	A	C	0.00183	GNAI3	+	FALSE
chr1	89525966	T	C	0.00039	GBP1	-	FALSE
chr6	42048128	G	T	0.00604	TAF8	+	FALSE	AluSq2	SINE,Alu
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	179829595	T	C	0.00188	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr15	90819444	A	G	5.90002E-05		.	FALSE	AluSx	SINE,Alu
chr1	160967856	T	C	0.00116	F11R	-	TRUE	AluSp	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr1	28261654	T	G	0.00574	SMPDL3B	+	FALSE
chr10	75008847	T	C	0.00349	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr2	37076594	T	C	0.00198	STRN	-	FALSE
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr1	1650832	A	G	0.00263	CDK11B,CDK11A	-	FALSE
chr17	46025078	A	G	0.00021	PNPO	+	TRUE	AluSc	SINE,Alu
chr2	37330391	T	C	0.00134		.	FALSE	AluSq2	SINE,Alu
chr1	16894514	C	T	0.00270	NBPF1	-	FALSE
chr1	36320634	T	C	0.00190	AGO4	+	FALSE
chr1	27202812	T	C	0.00388		.	FALSE	AluSq2	SINE,Alu
chr1	144931727	G	A	0.00211	NBPF20,PDE4DIP	+,-	FALSE
chr3	75779644	C	A	0.00177	ZNF717	-	FALSE
chr1	155106550	A	G	0.00015	EFNA1	+	FALSE
chr3	14986098	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu

RBP	SSRP1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR902WSK
Platform	HiSeq
Pubmed ID	32252787

SSRP1 - Target Gene Network