RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	148932848	A	G	0.00496	LOC645166	+	FALSE
chr3	155660833	A	G	0.00020		.	FALSE	AluSz	SINE,Alu
chr3	49315576	T	C	0.00191	USP4	-	FALSE
chr5	177576463	A	T	0.00554		.	FALSE
chr3	196670081	C	G	0.00500	NCBP2-AS2	+	FALSE
chr1	19633555	G	A	0.00219	AKR7A2	-	FALSE
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr2	73339708	G	A	0.00991	RAB11FIP5	-	FALSE
chr1	21766762	C	G	0.00259	NBPF3	+	FALSE
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr1	33068435	A	G	0.00081	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr1	94351063	A	T	0.00188	GCLM	-	FALSE
chr1	178444613	T	G	0.00630	RASAL2	+	FALSE
chr1	224517842	C	T	0.00014	NVL	-	FALSE
chr1	204525649	A	G	0.00191	MDM4	+	TRUE	AluSz	SINE,Alu
chr3	48485493	A	G	7.09932E-12	TMA7	+	FALSE
chr3	72424929	A	G	0.00988	RYBP	-	FALSE
chr1	87379498	T	G	0.00784	SEP15	-	FALSE
chr1	160967890	T	C	0.00871	F11R	-	TRUE	AluSp	SINE,Alu
chr10	126677249	A	T	0.00762	CTBP2	-	FALSE
chr12	56510704	G	A	0.00042	RPL41	+	FALSE
chr2	100899665	G	A	0.00758	LONRF2	-	FALSE
chr2	241825926	T	C	7.75373E-05	C2orf54	-	FALSE
chr3	196230564	G	C	0.00842	RNF168	-	FALSE
chr3	156258227	T	C	0.00094	SSR3	-	TRUE	AluYk3	SINE,Alu
chr3	10005650	C	T	0.00698	EMC3	-	FALSE
chr13	41635235	C	T	0.00400		.	FALSE
chr3	66430374	A	T	0.00275	LRIG1	-	FALSE
chr1	146740502	C	G	0.00692	CHD1L	+	FALSE
chr2	223807974	A	T	0.00593	ACSL3	+	FALSE
chr5	205565	G	A	0.00593	CCDC127	-	FALSE
chr1	19810692	A	C	0.00069	CAPZB	-	FALSE
chr12	98942665	A	G	1.31028E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr3	16357708	A	G	0.00098	RFTN1	-	FALSE
chr3	14986133	T	C	1.90274E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	156219450	A	G	0.00753	SMG5	-	FALSE
chr1	6614230	G	A	0.00509	NOL9	-	FALSE
chr1	36068369	T	C	0.00404	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	191745641	G	C	0.00222	GLS	+	FALSE	(GCA)n	SINE,Alu
chr3	75779644	C	A	0.00177	ZNF717	-	FALSE
chr1	24151858	C	T	0.00104	HMGCL	-	FALSE
chr3	128339057	A	T	0.00535	RPN1	-	FALSE	(A)n	SINE,Alu
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr17	38512480	C	T	0.00725	RARA	+	FALSE
chr1	22200473	C	T	0.00039	HSPG2	-	FALSE
chr1	28835847	A	G	0.00042	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr3	15113736	T	C	0.00641	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	207942472	A	G	0.00273	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	1252248	A	G	0.00938	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr17	57281098	A	G	0.00181	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr2	97534237	C	T	0.00644	SEMA4C	-	FALSE
chr1	113511408	A	G	0.00738		.	FALSE	AluY	SINE,Alu
chr2	189877304	A	T	0.00612	COL3A1	+	FALSE
chr2	191829133	G	A	0.00097	GLS	+	FALSE
chr1	16929327	C	T	0.00304	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr2	32532849	A	G	0.00909		.	FALSE	AluSx1	SINE,Alu
chr2	32533218	A	G	0.00106		.	FALSE	AluY	SINE,Alu
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr4	7762848	G	A	4.98180E-08	AFAP1,AFAP1-AS1	+,-	FALSE
chr2	98089475	T	A	0.00385	LOC100506076,LOC100506123	-	FALSE
chr1	1419888	A	G	0.00630	ATAD3B	+	TRUE	AluSp	SINE,Alu
chr19	42375540	A	G	0.00012		.	FALSE	AluSx	SINE,Alu
chr2	106510202	C	T	0.00854	NCK2	+	FALSE
chr1	10520683	T	C	0.00582	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	109240643	A	C	0.00608	PRPF38B	+	FALSE
chr1	204521580	A	G	0.00469	MDM4	+	TRUE	AluSg	SINE,Alu
chr14	75202553	A	G	0.00014	FCF1	+	TRUE	AluSc	SINE,Alu
chr5	37291617	T	C	0.00022		.	FALSE	AluSx3	SINE,Alu
chr4	120979178	T	C	0.00433		.	FALSE	AluSg4	SINE,Alu
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	114443458	A	G	0.00320	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr2	99812465	A	G	0.00367	MRPL30	+	TRUE	AluSx	SINE,Alu
chr12	54634306	T	C	0.00616	CBX5	-	TRUE	AluJr	SINE,Alu
chr3	196558949	A	G	6.63189E-10	PAK2	+	FALSE
chr3	140695493	C	A	0.00559	SLC25A36	+	FALSE
chr1	28800380	C	A	0.00709	PHACTR4	+	FALSE
chr1	16929100	C	T	0.00348	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr5	9549459	A	G	0.00783	SNHG18	+	FALSE
chr1	228675570	G	C	0.00298	RNF187	+	FALSE
chr1	28661633	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu
chr2	201735790	G	C	0.00671	PPIL3	-	FALSE
chr2	32535691	A	G	0.00023		.	FALSE	AluJb	SINE,Alu
chr1	144874760	T	C	0.00267	NBPF20,PDE4DIP	+,-	FALSE
chr1	19232017	T	G	0.00519	IFFO2	-	FALSE
chr12	98942820	A	G	0.00568	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	113455441	C	A	0.00047	SLC16A1	-	FALSE	(A)n	SINE,Alu
chr1	113239382	G	A	0.00519	MOV10	+	FALSE
chr1	224927968	G	A	0.00695	CNIH3	+	FALSE
chr1	9163393	T	C	0.00327		.	FALSE	AluSp	SINE,Alu
chr3	5026731	C	T	0.00824	BHLHE40	+	FALSE
chr3	10005392	T	C	8.76084E-06	EMC3	-	FALSE	AluSg7	SINE,Alu
chr1	28835934	A	G	0.00566	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr4	103809241	A	T	0.00073	CISD2,SLC9B1	+,-	FALSE
chr2	179969921	A	T	0.00203	SESTD1	-	FALSE
chr1	201845899	G	T	1.72907E-05	IPO9	+	FALSE
chr9	137534059	C	A	0.00626	COL5A1	+	FALSE
chr2	217366444	A	G	2.40359E-05		.	FALSE
chr14	74524774	T	C	0.00906	BBOF1,ALDH6A1	+,-	FALSE	AluSc8	SINE,Alu
chr1	10521172	T	C	0.00295	DFFA	-	TRUE	AluY	SINE,Alu
chr1	38279683	A	T	0.00685	MTF1	-	FALSE
chr12	98943162	A	G	5.01524E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr3	46007823	G	T	6.71801E-06	FYCO1	-	FALSE
chr1	9328086	G	A	0.00017	H6PD	+	FALSE	AluJr	SINE,Alu
chr17	42876808	T	C	0.00147	GJC1	-	TRUE	AluSz6	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr4	57326291	A	G	0.00549	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	59123655	C	T	0.00655	MYSM1	-	FALSE
chr1	153507176	C	T	0.00957	S100A6	-	FALSE
chr1	46521559	A	T	0.00177	PIK3R3	-	FALSE
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr8	42876058	A	G	0.00029	HOOK3	+	TRUE	AluSq2	SINE,Alu
chr2	74090064	A	T	0.00197	STAMBP	+	FALSE
chr2	114718893	C	G	0.00631	ACTR3	+	FALSE
chr1	157092836	G	A	0.00383		.	FALSE
chr3	156259340	T	C	0.00070	SSR3	-	TRUE	AluSq2	SINE,Alu
chr12	125511404	A	G	0.00201	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	45976723	T	C	0.00366	MMACHC,PRDX1	+,-	FALSE
chr1	109181308	T	A	0.00756	FAM102B	+	FALSE
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr1	63881552	C	T	0.00021	ALG6	+	FALSE
chr1	33148006	A	G	0.00110	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	67874731	T	C	0.00565	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	6683582	C	A	0.00152	PHF13	+	FALSE
chr11	111930765	T	C	0.00764	DLAT	+	FALSE
chr5	125961447	A	G	0.00563	PHAX	+	TRUE	AluSz6	SINE,Alu
chr5	135515156	G	A	0.00364	SMAD5	+	FALSE
chr5	125961455	A	G	0.00683	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	10519112	T	C	0.00333		.	FALSE	AluSx3	SINE,Alu
chr15	41590291	A	C	0.00032	OIP5-AS1	+	FALSE
chr2	102793246	A	G	0.00904	IL1R1	+	FALSE
chr1	1417649	T	G	0.00274	ATAD3B	+	FALSE
chr1	16893763	T	C	0.00996	NBPF1	-	FALSE
chr1	117648345	A	G	0.00739		.	FALSE
chr1	184762676	T	C	0.00720	FAM129A	-	TRUE	AluSz	SINE,Alu
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr7	128167988	T	C	0.00290		.	FALSE	AluSg	SINE,Alu
chr1	201846627	A	T	0.00571	IPO9	+	FALSE	(CA)n	SINE,Alu
chr2	202032107	A	G	0.00401	CFLAR	+	TRUE	AluJo	SINE,Alu
chr7	73150511	T	C	0.00414	ABHD11	-	FALSE
chr1	16892918	T	C	0.00590	NBPF1	-	FALSE
chr2	232319615	A	T	8.19218E-06	NCL	-	FALSE
chr3	46007825	T	C	4.58354E-06	FYCO1	-	FALSE
chr1	10518875	T	C	0.00127		.	FALSE	AluSx1	SINE,Alu
chr1	120572572	C	T	0.00497	NOTCH2	-	FALSE
chr1	9163405	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr1	71532815	G	A	0.00712	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr8	92075904	T	C	0.00242	OTUD6B-AS1	-	FALSE	LTR67B	SINE,Alu
chr1	179326882	A	G	1.03454E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr2	86249961	T	C	0.00368	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	197611125	A	G	0.00948		.	FALSE	AluSx1	SINE,Alu
chr4	145031951	T	A	0.00377	GYPA	-	FALSE	(TG)n	SINE,Alu
chr15	41590287	A	G	0.00568	OIP5-AS1	+	FALSE
chr1	19542310	T	C	9.10228E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr17	48771484	C	A	0.00737	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	120166681	G	A	0.00879	ZNF697	-	FALSE
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	59004766	G	T	0.00213	OMA1	-	FALSE
chr6	160101723	T	C	0.00234	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	38478446	C	G	4.10892E-09	UTP11	+	FALSE
chr6	71298815	T	A	0.00287		.	FALSE
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr15	65442602	T	C	8.94083E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	26608017	T	A	3.67009E-06		.	FALSE
chr4	153898316	A	G	0.00312	FHDC1	+	TRUE	AluJo	SINE,Alu
chr1	33071159	A	G	0.00947	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	10518831	T	C	0.00213		.	FALSE	AluSx1	SINE,Alu
chr1	16096934	C	T	0.00336	FBLIM1	+	FALSE
chr2	34080819	A	C	0.00815	LINC01317	+	FALSE	MSTD	SINE,Alu
chr1	19542239	T	C	0.00043	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	146033660	C	A	0.00091	NBPF20,NBPF10,NBPF25P,NBPF11	+,-	FALSE
chr12	69237020	A	G	0.00150	MDM2	+	TRUE
chr1	32681795	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr1	230974329	A	G	0.00355	C1orf198	-	FALSE
chr2	27838058	C	A	0.00063	ZNF512	+	FALSE
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr1	9643054	A	G	5.80579E-05		.	FALSE	AluSx	SINE,Alu
chr1	16946336	G	A	0.00409	CROCCP2	-	FALSE
chr1	32373837	G	T	0.00681	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr7	128607384	G	A	0.00925	TNPO3	-	FALSE
chr1	23884661	G	A	0.00205	ID3	-	FALSE
chr1	19543309	T	C	0.00769	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	146643580	G	A	0.00113	PRKAB2	-	FALSE
chr1	13942884	A	C	0.00016	PDPN	+	FALSE
chr3	48485381	T	C	0.00103	TMA7	+	FALSE
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr1	93616202	T	C	0.00194	TMED5	-	FALSE
chr17	73939212	T	C	0.00376	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr15	90819472	A	G	0.00068		.	FALSE	AluSx	SINE,Alu
chr1	23636278	A	T	0.00085	HNRNPR	-	FALSE
chr2	37331578	T	C	0.00675		.	FALSE	AluJb	SINE,Alu
chr4	77996987	T	C	0.00240	CCNI	-	FALSE
chr19	10602447	C	T	0.00878	KEAP1	-	FALSE
chr1	204525744	A	G	0.00010	MDM4	+	TRUE	AluSz	SINE,Alu
chr20	25428384	A	G	0.00195	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	40539212	C	A	0.00380	PPT1	-	FALSE
chr1	94995236	G	A	0.00803	F3	-	FALSE
chr1	45244419	T	A	0.00027		.	FALSE
chr1	19586520	A	G	0.00846	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	6283306	T	C	0.00558	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	10519946	T	C	0.00033		.	FALSE	AluJr	SINE,Alu
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr1	200375847	T	G	0.00027	ZNF281	-	FALSE	(T)n	SINE,Alu
chr17	416890	C	T	0.00231	VPS53	-	FALSE
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10517512	T	C	0.00646		.	FALSE	AluSx1	SINE,Alu
chr19	19792448	A	G	0.00416	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	6730782	C	T	0.00807	DNAJC11	-	FALSE
chr1	145688664	A	T	0.00679	NBPF20,NBPF10,RNF115	+	FALSE
chr3	40560101	A	G	0.00322		.	FALSE	AluSc8	SINE,Alu
chr1	24864008	A	G	0.00601		.	FALSE
chr1	92862896	A	G	6.86172E-05		.	FALSE	AluJr	SINE,Alu
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr2	37331037	T	C	0.00036		.	FALSE	AluSx1	SINE,Alu
chr1	21810575	T	C	0.00827	NBPF3	+	FALSE
chr1	9329289	C	T	0.00303	H6PD	+	FALSE
chr1	201846675	C	T	0.00145	IPO9	+	FALSE
chr1	145293515	A	G	0.00885	NBPF20,NBPF10	+	FALSE
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr3	45721827	C	A	0.00142	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	569803	G	A	0.00695		.	FALSE
chr1	149783886	C	T	0.00526	HIST2H2BF	-	FALSE
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr13	41635234	T	C	0.00395		.	FALSE
chr1	46075709	A	G	0.00431	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	53288894	A	G	8.27269E-06	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	52882970	A	G	0.00533	PRPF38A	+	FALSE
chr1	113673737	A	G	0.00798		.	FALSE	AluSx1	SINE,Alu
chr12	124069108	G	A	0.00635	TMED2	+	FALSE	(GCG)n	SINE,Alu
chr1	145322843	C	T	0.00271	NBPF20,NBPF10	+	FALSE
chr2	217366674	A	G	0.00889		.	FALSE	AluSz	SINE,Alu
chr5	108714298	T	C	0.00967	PJA2	-	FALSE
chr11	8707395	C	A	9.51875E-07	RPL27A	+	FALSE
chr3	127790249	A	G	0.00276	RUVBL1,SEC61A1	+,-	FALSE
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr1	3745924	G	A	0.00612	CEP104	-	FALSE
chr2	206987731	T	C	0.00731		.	FALSE	AluJb	SINE,Alu
chr1	173834149	A	C	0.00265	GAS5	-	FALSE	AluSz	SINE,Alu
chr1	16959698	G	A	0.00086		.	FALSE
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr16	28296456	T	C	0.00772		.	FALSE	AluJb	SINE,Alu
chr13	114204255	A	G	0.00134	TMCO3	+	FALSE
chr1	180991776	C	A	0.00664	STX6	-	FALSE
chr6	43747964	G	A	0.00542	VEGFA	+	FALSE
chr17	57279282	A	G	7.34157E-06	PRR11	+	TRUE	AluSq2	SINE,Alu
chr5	96372165	G	A	0.00149		.	FALSE
chr3	194369580	C	A	0.00042	LSG1	-	FALSE
chr2	217366803	A	G	0.00914		.	FALSE	AluSz6	SINE,Alu
chr1	38158211	C	T	0.00091	CDCA8	+	FALSE
chr2	65496187	G	A	0.00266	ACTR2	+	FALSE
chr3	40577810	A	G	0.00896	ZNF621	+	TRUE	AluSz	SINE,Alu
chr8	48890109	A	G	8.88178E-16	MCM4	+	TRUE	AluJb	SINE,Alu
chr1	16889423	G	C	6.92544E-07	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr2	10711446	T	C	0.00014	NOL10	-	FALSE	MSTA	SINE,Alu
chr1	6475348	C	A	4.73725E-05	HES2	-	FALSE	Tigger1	SINE,Alu
chr6	36894341	G	A	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr2	85133793	G	A	0.00577	TMSB10	+	FALSE
chr1	28835847	A	G	4.14471E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	175161849	G	T	0.00030	KIAA0040	-	FALSE
chr2	105963597	C	T	0.00898	C2orf49	+	FALSE
chr5	40832548	A	T	0.00048	RPL37	-	FALSE
chr1	146629399	G	T	0.00611	PRKAB2	-	FALSE
chr1	230416410	G	T	0.00516	GALNT2	+	FALSE
chr17	60522252	G	A	0.00187	METTL2A	+	FALSE
chr1	180855948	G	A	0.00218	XPR1	+	FALSE
chr2	183642652	G	A	0.00309	DNAJC10	+	FALSE
chr1	762109	C	T	0.00026	LINC00115	-	FALSE
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr1	53288870	A	G	0.00122	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr17	4929004	A	G	0.00030	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	35658211	G	T	1.28982E-07	SFPQ	-	FALSE
chr1	3703611	A	C	0.00208	LRRC47	-	FALSE
chr1	118068558	G	A	0.00876		.	FALSE
chr1	10520487	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr1	109240641	T	A	0.00090	PRPF38B	+	FALSE
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr1	45975358	A	G	0.00089	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr4	39552646	T	C	0.00555	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr12	120898553	A	G	0.00233	GATC	+	TRUE	AluY	SINE,Alu
chr1	70904800	G	T	0.00678	CTH	+	FALSE
chr1	3545194	C	G	0.00254	TPRG1L	+	FALSE
chr15	34634033	A	G	0.00939	NOP10	-	FALSE
chr6	150045926	T	C	0.00053	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	144618201	T	C	2.48995E-05	NBPF20,NBPF9	+	FALSE
chr1	1251844	T	C	0.00731	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr8	128752643	G	A	4.26326E-14	MYC	+	FALSE	GA-rich	SINE,Alu
chr2	3605906	C	A	0.00982	RNASEH1	-	FALSE
chr1	25170760	T	A	0.00975	CLIC4	+	FALSE
chr4	126849	A	G	0.00018	ZNF718	+	TRUE	AluSc	SINE,Alu
chr1	26143726	G	T	0.00128	SEPN1	+	FALSE	AluSx	SINE,Alu
chr19	16661483	T	C	0.00824	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	47141718	T	C	0.00978	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	148556087	G	C	0.00106		.	FALSE
chr3	99516879	A	T	0.00667	MIR548G	-	FALSE
chr7	20178434	T	C	0.00178	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr1	120695554	G	A	0.00492		.	FALSE
chr1	28825337	A	G	0.00313	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	142804438	G	T	0.00522		.	FALSE
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr1	52381348	T	G	0.00500	RAB3B	-	FALSE
chr1	19585545	G	A	0.00696	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr2	75120158	A	T	0.00222	HK2	+	FALSE
chr6	42857136	A	G	2.38933E-09	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	33960062	A	G	0.00064	ZSCAN20	+	FALSE
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr8	124262075	G	T	7.79989E-05	ZHX1-C8orf76,ZHX1	-	FALSE
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr15	91044379	T	G	0.00440	IQGAP1	+	FALSE
chr17	4929861	A	G	0.00705	KIF1C	+	TRUE	AluJb	SINE,Alu
chr10	53456599	A	G	0.00339	PRKG1,CSTF2T	+,-	FALSE
chr1	16934178	C	T	0.00382	NBPF1	-	FALSE
chr8	95805070	A	G	0.00721	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr9	115446725	T	C	0.00917	INIP	-	TRUE	AluJr	SINE,Alu
chr2	180810264	A	T	1.24157E-05	CWC22	-	FALSE
chr1	6283306	T	C	0.00505	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	71859287	C	G	0.00557	DCK	+	FALSE
chr1	38326547	C	T	0.00212	INPP5B	-	FALSE	AluJr	SINE,Alu
chr5	130537789	A	G	0.00822	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	101372409	T	C	0.00203	SLC30A7	+	FALSE
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr1	155403823	A	G	0.00850	ASH1L,POU5F1P4	+,-	FALSE
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	142805281	C	T	0.00242		.	FALSE
chr1	1593060	T	C	0.00538	CDK11B,SLC35E2B	-	FALSE
chr1	10519910	T	C	7.27344E-07		.	FALSE	AluJr	SINE,Alu
chr2	113513825	T	C	2.13681E-05	CKAP2L	-	FALSE
chr1	89522646	G	C	0.00027	GBP1	-	FALSE
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr2	73301687	G	A	0.00618	RAB11FIP5	-	FALSE
chr1	89518173	T	A	0.00465	GBP1	-	FALSE
chr2	20648946	C	T	0.00531	RHOB	+	FALSE
chr3	98517013	T	C	1.12976E-12	DCBLD2	-	FALSE
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr5	125961918	G	A	0.00421	PHAX	+	FALSE	FLAM_C	SINE,Alu
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr14	61112736	T	G	0.00418	SIX1	-	FALSE	(T)n	SINE,Alu
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr13	52952575	G	A	0.00030	THSD1	-	FALSE
chr1	148251079	T	C	0.00880	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr3	122283294	G	C	0.00066	DTX3L,PARP9	+,-	FALSE
chr15	40954864	A	G	0.00636	KNL1	+	TRUE
chr3	181430144	C	T	0.00043	SOX2-OT,SOX2	+	FALSE
chr3	40577745	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	1251841	T	C	0.00222	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	6283548	A	G	0.00286	ICMT	-	FALSE
chr1	226172221	T	C	0.00118	SDE2	-	FALSE	L1MEf	SINE,Alu
chr3	44790759	T	C	1.45198E-07	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	86249961	T	C	0.00067	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	36067886	T	C	0.00150	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16889563	C	A	0.00090	NBPF1	-	FALSE
chr2	136541076	C	A	0.00211	UBXN4	+	FALSE
chr2	85132777	T	C	1.13350E-06	TMSB10	+	FALSE
chr8	11700676	T	C	0.00534	CTSB	-	TRUE	AluSg	SINE,Alu
chr6	29911970	G	A	0.00284		.	FALSE
chr1	19543456	T	C	0.00011	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	153609268	G	A	0.00263	CHTOP	+	FALSE
chr1	16902943	T	C	0.00833	NBPF1	-	FALSE
chr14	70838264	T	C	0.00059	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr1	179044252	A	G	0.00801	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	229439639	T	A	0.00276	RAB4A	+	FALSE
chr8	87485483	G	C	0.00554	RMDN1	-	FALSE
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr21	44836048	G	A	0.00542	LOC102724428,SIK1	-	FALSE
chr1	21671943	T	G	0.00471	ECE1	-	FALSE	(GCTCCCG)n	SINE,Alu
chr1	210004199	C	G	0.00531	DIEXF	+	FALSE
chr1	120611964	G	C	0.00077	NOTCH2	-	FALSE
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chr8	144357992	A	G	0.00780	GLI4	+	FALSE
chr1	22161275	G	A	0.00600	HSPG2	-	FALSE
chr1	16958047	C	T	0.00193		.	FALSE
chr1	220323448	C	T	0.00223	RAB3GAP2	-	FALSE
chr1	900721	T	C	0.00109	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr3	197682718	T	C	0.00163	IQCG,RPL35A	+,-	FALSE
chr1	249139806	G	A	0.00983	ZNF672	+	FALSE
chr15	66791657	G	T	0.00422	RPL4	-	FALSE
chr7	44839297	A	T	0.00777	PPIA	+	FALSE
chr1	16889663	A	G	0.00392	NBPF1	-	FALSE
chr15	42861741	A	G	0.00200	HAUS2	+	TRUE	AluJb	SINE,Alu
chr1	100731820	G	A	0.00771	RTCA	+	FALSE
chr5	174956487	T	C	0.00457	SFXN1	+	FALSE
chrX	23721458	T	A	0.00413		.	FALSE	AluSc8	SINE,Alu
chr1	40229368	A	G	0.00209	BMP8B,PPIE	+,-	FALSE
chr14	52906081	T	G	0.00602	TXNDC16	-	FALSE
chr2	206987136	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr1	19542456	T	C	0.00135	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	1653093	A	G	0.00036	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr4	39551031	T	C	0.00068	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr17	41144581	A	C	0.00806	RUNDC1	+	FALSE	AluSx	SINE,Alu
chr1	31732677	G	A	0.00353	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr2	86252025	T	C	3.86923E-05	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	204521625	A	G	0.00808	MDM4	+	TRUE	AluSg	SINE,Alu
chr17	78921108	G	A	0.00065	RPTOR	+	FALSE
chr1	53711735	G	C	0.00884	LRP8	-	FALSE
chr6	134492481	A	C	0.00340	SGK1	-	FALSE
chr1	9328223	A	G	0.00591	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	145293515	A	G	4.09953E-06	NBPF20,NBPF10	+	FALSE
chr6	157405930	G	A	0.00077	ARID1B	+	FALSE
chr1	1337734	C	T	3.46713E-05	MRPL20	-	FALSE
chr3	75474643	T	C	0.00850	FAM86DP	-	TRUE	AluJo	SINE,Alu
chr7	66105163	C	G	0.00594	KCTD7	+	FALSE
chr9	115446668	T	C	1.81109E-05	INIP	-	TRUE	AluJr	SINE,Alu
chr1	9162456	T	C	0.00043		.	FALSE	AluSx	SINE,Alu
chr11	76733943	A	G	0.00925	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	173793106	C	T	0.00772	CENPL	-	FALSE
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr10	63852210	C	T	0.00324	ARID5B	+	FALSE
chr5	125961623	A	G	4.58304E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr17	4856580	T	C	0.00922	ENO3	+	FALSE
chr8	128944717	G	T	0.00091	PVT1	+	FALSE
chr1	26900708	G	A	0.00349	RPS6KA1	+	FALSE
chr2	76672504	A	G	0.00010		.	FALSE	7SK	SINE,Alu
chr7	102006488	A	T	0.00168	LOC100289561,LOC100630923	+	FALSE
chr2	86250013	T	C	0.00867	LOC90784	-	TRUE	AluSx	SINE,Alu
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	206580231	A	G	0.00100	SRGAP2	+	FALSE
chr1	168218660	A	G	0.00296		.	FALSE	AluSz	SINE,Alu
chr1	46075661	A	G	0.00071	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	145311900	C	T	0.00286	NBPF20,NBPF10	+	FALSE
chr18	61565062	C	G	0.00207	SERPINB2	+	FALSE
chr3	15112612	T	C	0.00634	RBSN	-	TRUE	AluSq2	SINE,Alu
chr17	79780692	T	C	0.00116	MCRIP1	-	TRUE
chr3	195411267	A	G	1.93837E-05	SDHAP2	+	FALSE
chr11	65764470	T	C	0.00435	EIF1AD	-	TRUE	AluSz6	SINE,Alu
chr2	99812988	A	G	0.00793	MRPL30	+	TRUE	AluJb	SINE,Alu
chr3	40503772	T	A	0.00153	RPL14	+	FALSE
chr1	17298138	A	T	0.00465	CROCC	+	FALSE
chr1	10521170	T	C	0.00104	DFFA	-	TRUE	AluY	SINE,Alu
chr1	147091972	C	T	8.17896E-06	BCL9	+	FALSE
chr9	102744711	A	T	0.00675	ERP44	-	FALSE
chr1	144917841	T	C	4.47769E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	148951398	C	T	0.00068	LOC645166	+	FALSE
chr1	45976269	C	G	0.00039	MMACHC	+	FALSE
chr1	10367058	G	A	0.00328	KIF1B	+	FALSE
chr7	64023437	A	G	0.00073	ZNF680	-	FALSE
chr1	9163110	T	C	0.00103		.	FALSE	FRAM	SINE,Alu
chr1	44071221	G	A	0.00105	PTPRF	+	FALSE
chr1	205057482	A	T	0.00907	RBBP5	-	FALSE
chr1	200375846	G	T	0.00040	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr4	83406545	A	G	0.00156	TMEM150C	-	FALSE
chr1	206635245	T	C	0.00238	SRGAP2	+	FALSE
chr1	1421186	C	T	0.00834	ATAD3B	+	FALSE
chr1	23833607	A	T	0.00818	E2F2	-	FALSE
chr4	17803604	T	C	0.00174	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	207943385	A	G	0.00751	CD46	+	TRUE	AluSx1	SINE,Alu
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr1	8072233	T	C	0.00647	ERRFI1	-	FALSE
chr1	113213004	G	T	0.00206	CAPZA1	+	FALSE
chr2	28636644	A	G	0.00918	FOSL2	+	FALSE
chr5	53841238	G	T	0.00267	SNX18	+	FALSE
chr1	16932845	T	G	0.00732	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	191224981	G	T	0.00676	INPP1	+	FALSE
chr1	244219904	T	G	0.00482	ZBTB18	+	FALSE
chr3	195435168	T	G	0.00111	LINC00969	+	FALSE
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr1	10093457	C	T	0.00777	UBE4B	+	FALSE
chr15	82336939	G	A	2.47536E-05	MEX3B	-	FALSE
chr3	196658640	C	T	0.00444	SENP5	+	FALSE
chr3	49396588	T	C	0.00533	RHOA	-	FALSE
chr21	40567665	G	A	0.00786	BRWD1	-	FALSE
chr1	16890130	A	C	0.00412	NBPF1	-	FALSE
chr1	9161203	T	C	3.69156E-05		.	FALSE	AluSx	SINE,Alu
chr2	201842323	T	C	0.00591	FAM126B	-	TRUE	AluJb	SINE,Alu
chr11	63724398	T	C	0.00664	NAA40	+	FALSE	AluSx	SINE,Alu
chr3	141667460	T	G	0.00193	TFDP2	-	FALSE
chr1	53289688	A	G	0.00059	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr3	10192838	A	G	1.36876E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	179044309	A	G	0.00558	FAM20B	+	TRUE	AluSx	SINE,Alu
chr17	49042206	T	C	0.00030	SPAG9	-	TRUE	AluJb	SINE,Alu
chr14	76045220	T	C	0.00421	LOC102724153,FLVCR2	+,-	FALSE
chr1	2335871	G	A	0.00298	RER1	+	FALSE
chr3	183533964	T	C	2.38465E-05	MAP6D1	-	FALSE
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu

RBP	APOBEC3C
Knock-Method	shRNA
RBP Family	APOBEC_N
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR963RLK
Platform	HiSeq
Pubmed ID	32252787

APOBEC3C - Target Gene Network