Dataset Overview
RBP
NUFIP2
Knock-Method
shRNA
RBP Family
NUFIP2
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR584JRB
Platform
HiSeq
Pubmed ID
32252787
NUFIP2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of NUFIP2
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1CF
47.59
39.59
0.34139
0.00405
0.01708
A2M
3527.82
3671.53
-0.44433
0.00015
0.00111
AADAT
9.24
11.96
0.57535
0.00021
0.00150
AARS
74.14
57.03
-0.34633
0.00691
0.02618
AARS2
4.14
5.56
0.47401
0.00807
0.02952
AASS
10.25
15.53
0.64999
7.95785E-06
8.93665E-05
AATF
20.53
29.16
0.67732
2.05115E-07
3.48036E-06
AATK
1.96
2.39
0.50256
0.01235
0.04174
ABAT
18.3
20.18
0.24643
0.04150
0.10796
ABC7-42389800N19.1
14.66
17.61
0.33931
0.02038
0.06216
Showing 1 to 10 of 5,242 entries
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Function Analysis of Target Genes of NUFIP2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AASS
121725631_121725772_121722841_121722945_121726065_121726233
0.00853
-0.099
DataSet_01_285
View details
ABCC6P1
18585641_18585757_18584198_18584382_18586082_18586208
0.00105
0.256
DataSet_01_285
View details
ACAD11
132297872_132297900_132297676_132297725_132298335_132298402
0.00199
-0.126
DataSet_01_285
View details
ACADM
76252384_76252550_76251717_76251959_76253181_76253260
0.00031
0.097
DataSet_01_285
View details
ACADM
76252384_76252601_76251717_76251959_76253181_76253260
0.00737
0.074
DataSet_01_285
View details
ADRM1
60879516_60879541_60878623_60878837_60881252_60881376
0.00760
0.224
DataSet_01_285
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AFP
74313330_74313393_74309063_74309161_74315051_74315184
0.00007
0.016
DataSet_01_285
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ATXN7L1
105279933_105280016_105278799_105279056_105283284_105283568
0.00298
-0.037
DataSet_01_285
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C12orf49
117157567_117157681_117153592_117155698_117160871_117161028
0.00411
-0.2
DataSet_01_285
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C17orf76-AS1
16342973_16343017_16342358_16342728_16343498_16343567
0.00226
0.066
DataSet_01_285
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Showing 1 to 10 of 105 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC1
16149948_16150152_16162012_16162159_16146580_16146673
0.00006
0.436
DataSet_01_285
View details
ACAA2
47323835_47323964_47329056_47329223_47322134_47322251
0.00000
-0.16
DataSet_01_285
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ACIN1
23531376_23531484_23531624_23531732_23530506_23530831
0.00000
-0.401
DataSet_01_285
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ACSL3
223791734_223791960_223793579_223793654_223789173_223789313
0.00001
-0.077
DataSet_01_285
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AFG3L2
12337339_12337534_12340199_12340400_12328942_12329782
0.00659
-0.125
DataSet_01_285
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AHSG
186336079_186336280_186336358_186336426_186334975_186335139
0.00000
-0.26
DataSet_01_285
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AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00002
-0.012
DataSet_01_285
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AP1G2
24032924_24033065_24033254_24033430_24032792_24032847
0.00006
-0.099
DataSet_01_285
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APOE
45409858_45409924_45411016_45411209_45409010_45409098
0.00289
0.333
DataSet_01_285
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APOH
64222145_64222242_64224133_64224314_64219815_64219892
0.00328
0.073
DataSet_01_285
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Showing 1 to 10 of 149 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ARHGAP26
142586762_142587038_142586762_142586873_142593561_142593653
0.00922
-0.244
DataSet_01_285
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EIF4G2
10823207_10823756_10823595_10823756_10822496_10822634
0.00162
0.074
DataSet_01_285
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MYADM
54371136_54371364_54371136_54371197_54373007_54373092
0.00674
0.123
DataSet_01_285
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MYL6
56553370_56553489_56553370_56553406_56553758_56553932
0.00042
0.047
DataSet_01_285
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NABP1
192542861_192543431_192542861_192542967_192543715_192543854
0.00218
0.221
DataSet_01_285
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PLCG1
39795325_39795571_39795325_39795499_39796491_39796569
0.00004
0.195
DataSet_01_285
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PPM1H
63225863_63226059_63225893_63226059_63195595_63195940
0.00736
0.218
DataSet_01_285
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RBM39
34328727_34328809_34328745_34328809_34326889_34326939
0.00293
0.05
DataSet_01_285
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SART3
108942863_108942990_108942912_108942990_108941662_108941767
0.00957
-0.213
DataSet_01_285
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Showing 1 to 9 of 9 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD11
132297639_132297900_132297639_132297725_132298335_132298402
0.00322
-0.181
DataSet_01_285
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AP1G2
24034329_24034551_24034329_24034408_24034814_24034910
0.00015
-0.146
DataSet_01_285
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CENPK
64814161_64814460_64814161_64814379_64817301_64817355
0.00686
-0.237
DataSet_01_285
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CHD8
21859621_21859801_21859621_21859660_21859991_21860105
0.00932
-0.119
DataSet_01_285
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DDX5
62496792_62497000_62496792_62496891_62498127_62498187
0.00077
0.091
DataSet_01_285
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FN1
216236631_216236831_216236631_216236738_216238044_216238134
0.00072
-0.052
DataSet_01_285
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MAP4
47917174_47917363_47917174_47917315_47918906_47919013
0.00433
-0.086
DataSet_01_285
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NEO1
73528627_73528847_73528687_73528847_73470647_73470768
0.00059
-0.312
DataSet_01_285
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NSFL1C
1426310_1426794_1426310_1426475_1433137_1433275
0.00616
0.036
DataSet_01_285
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PAK2
196537443_196537524_196537460_196537524_196534652_196534785
0.00226
0.056
DataSet_01_285
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Showing 1 to 10 of 14 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD11
132297639_132298402_132297639_132297725_132298335_132298402
0.00199
-0.188
DataSet_01_285
View details
ACTG1
79477952_79478652_79477952_79478134_79478213_79478652
0.00553
0.009
DataSet_01_285
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ATG16L1
234198499_234198999_234198499_234198620_234198893_234198999
0.00258
-0.204
DataSet_01_285
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CIAO1
96934194_96935093_96934194_96934396_96935005_96935093
0.00664
0.083
DataSet_01_285
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DDX41
176943288_176943836_176943288_176943517_176943725_176943836
0.00685
-0.159
DataSet_01_285
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DDX5
62496666_62498187_62496666_62496891_62498127_62498187
0.00760
0.068
DataSet_01_285
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EPS8L2
709552_710486_709552_709608_710421_710486
0.00350
-0.057
DataSet_01_285
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FBXO9
52957531_52958359_52957531_52957622_52958263_52958359
0.00711
0.148
DataSet_01_285
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FTH1
61734783_61735103_61734783_61734843_61734929_61735103
0.00000
0.11
DataSet_01_285
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GAS5
173833394_173834420_173833394_173833842_173834366_173834420
0.00594
0.062
DataSet_01_285
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
67874849
T
C
0.00169
SERBP1
-
TRUE
AluSx
SINE,Alu
chr1
33086876
T
C
0.00104
ZBTB8OS
-
TRUE
AluY
SINE,Alu
chr1
10517485
T
C
0.00040
.
FALSE
AluSx1
SINE,Alu
chr1
11734730
C
T
4.90909E-09
MAD2L2
-
FALSE
chr1
53288897
A
G
0.00160
ZYG11B
+
TRUE
AluJo
SINE,Alu
chr1
160966301
T
C
7.77749E-07
F11R
-
TRUE
AluSg
SINE,Alu
chr1
205687344
C
T
0.00633
NUCKS1
-
FALSE
(T)n
SINE,Alu
chr1
19586458
A
G
1.61978E-09
MRTO4
+
TRUE
AluSz
SINE,Alu
chr1
178444613
T
G
0.00630
RASAL2
+
FALSE
chr1
19543282
T
C
0.00228
LOC101927895,EMC1
+,-
FALSE
AluJb
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression