RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr14	20770036	T	C	0.00217	TTC5	-	FALSE
chr3	105266274	T	C	4.07026E-07	ALCAM	+	FALSE
chr6	42856131	A	G	0.00062	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr16	603884	C	G	0.00118	CAPN15	+	FALSE
chr2	206987731	T	C	0.00731		.	FALSE	AluJb	SINE,Alu
chr1	27202982	T	C	0.00850		.	FALSE	AluSq2	SINE,Alu
chr1	31345067	G	T	0.00804	SDC3	-	FALSE
chr1	28662254	A	G	0.00052	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	36067838	T	C	1.55029E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	27180861	C	T	0.00721	ZDHHC18	+	FALSE
chr5	125961647	A	G	1.53189E-07	PHAX	+	FALSE	AluSz6	SINE,Alu
chr1	36068325	T	C	0.00638	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	202029999	T	G	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr1	184661932	A	G	0.00063	EDEM3	-	FALSE
chr1	154987526	C	T	0.00218	ZBTB7B	+	FALSE
chr3	124688639	C	A	0.00165	HEG1	-	FALSE
chr2	37328034	T	C	6.77479E-07		.	FALSE
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr9	116812614	A	G	0.00674	ZNF618	+	FALSE
chr1	201846616	C	G	0.00209	IPO9	+	FALSE	(CA)n	SINE,Alu
chr19	9672919	T	C	0.00097		.	FALSE	AluSx3	SINE,Alu
chr1	24288529	T	C	0.00401	PNRC2	+	FALSE
chr19	11560461	A	G	0.00034	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr1	200375848	C	T	0.00586	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	16945504	C	T	0.00665	CROCCP2	-	FALSE
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	144619903	T	A	0.00712	NBPF20,NBPF9	+	FALSE
chr2	55255313	T	A	0.00675	RTN4	-	FALSE
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	89887603	C	T	0.00308	GBP1P1	+	FALSE
chr1	1650797	A	G	0.00798	CDK11B,CDK11A	-	FALSE
chr1	28836975	A	G	0.00782	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	181058313	G	A	0.00651	IER5	+	FALSE
chr11	8707395	C	A	9.51875E-07	RPL27A	+	FALSE
chr2	112252629	A	C	0.00107	MIR4435-2HG	-	FALSE
chr1	9416574	A	G	0.00144	SPSB1	+	FALSE
chr19	9673274	T	C	0.00018		.	FALSE	Tigger1	SINE,Alu
chr6	158364714	A	G	0.00442	SNX9	+	FALSE
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr14	23300663	G	A	0.00120	MRPL52	+	FALSE	MIRb	SINE,Alu
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	152552285	C	A	0.00400	LCE3D	-	FALSE
chr3	17202334	A	C	0.00770	TBC1D5	-	FALSE
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	46075168	C	A	0.00155	NASP	+	FALSE	A-rich	SINE,Alu
chr3	45721990	A	G	0.00779	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	128602366	T	C	0.00236		.	FALSE	AluSq2	SINE,Alu
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr1	47844500	T	G	0.00596	CMPK1	+	FALSE
chr4	17803537	T	C	7.44979E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	216903620	T	C	0.00623	PECR	-	TRUE	AluSx3	SINE,Alu
chr5	81571877	C	T	0.00250	RPS23	-	FALSE
chr1	3545192	C	G	0.00011	TPRG1L	+	FALSE
chr16	10625049	T	C	1.15092E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr5	134062605	C	T	0.00019	SEC24A	+	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	43996594	T	C	0.00836	PTPRF	+	FALSE	(CGGCTC)n	SINE,Alu
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr8	30643547	T	A	0.00748	PPP2CB	-	FALSE
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr10	73994158	A	G	0.00110	ANAPC16	+	TRUE	AluJr	SINE,Alu
chr1	225678910	T	C	2.51322E-05	ENAH	-	TRUE	AluSx1	SINE,Alu
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	38155698	G	T	0.00368	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr1	28825486	A	G	0.00049	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr2	37328013	T	C	0.00401		.	FALSE
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr1	9163334	T	C	0.00074		.	FALSE	AluSp	SINE,Alu
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr2	114513901	C	T	0.00655	SLC35F5	-	FALSE
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr6	26095468	A	G	0.00980	HFE	+	TRUE	AluY	SINE,Alu
chr1	6283448	T	C	0.00827	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	24289057	G	C	0.00044	PNRC2	+	FALSE
chr1	241792562	A	G	0.00800	OPN3,CHML	-	FALSE
chr1	220231982	T	C	0.00328	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr4	17802783	T	C	0.00509	DCAF16	-	TRUE	AluSz	SINE,Alu
chr4	248996	A	G	0.00123	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr4	155457049	T	A	0.00370	PLRG1	-	FALSE	L2d2	SINE,Alu
chr1	22855441	C	T	0.00884	ZBTB40	+	FALSE
chr1	45976265	A	G	0.00657	MMACHC	+	FALSE
chr1	28573293	G	A	0.00059		.	FALSE
chr7	55266417	T	C	0.00201	EGFR	+	FALSE
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr1	19586532	A	G	0.00188	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	52383255	T	C	0.00708	RAB3B	-	FALSE	AluJr	SINE,Alu
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr1	567191	C	T	0.00428		.	FALSE
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr2	38971637	G	A	2.13337E-05	SRSF7	-	FALSE
chr1	17313654	C	T	0.00886	ATP13A2	-	FALSE
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr3	58141791	A	G	0.00696	FLNB	+	FALSE
chr5	37290397	T	C	0.00305		.	FALSE	AluSz	SINE,Alu
chr2	143638994	G	A	0.00075	KYNU	+	FALSE
chr4	2940164	T	C	0.00381	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr1	11347152	A	T	0.00295	UBIAD1	+	FALSE
chr1	47905555	A	C	0.00661	FOXD2	+	FALSE
chr1	36789546	A	G	0.00562	EVA1B	-	FALSE	MIRb	SINE,Alu
chr5	133918134	G	T	0.00404	JADE2	+	FALSE
chr15	85184830	T	C	0.00895	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu
chr1	171561203	T	G	0.00075	PRRC2C	+	FALSE
chr1	204526713	A	G	0.00078	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	156565049	A	C	0.00169	GPATCH4	-	FALSE
chr12	6601329	C	T	3.97278E-05	MRPL51	-	FALSE
chr1	67874697	T	C	0.00010	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	78184325	A	G	0.00150	USP33	-	FALSE
chr2	91955209	G	A	6.38312E-06		.	FALSE
chr1	20978451	T	C	0.00193	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	116609833	G	A	0.00773	SLC22A15	+	FALSE
chr8	6615608	C	G	0.00017	AGPAT5	+	FALSE
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr1	29519595	T	C	0.00208	MECR	-	TRUE	AluJb	SINE,Alu
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr3	196670098	T	C	0.00019	NCBP2-AS2	+	FALSE
chr1	161338504	C	G	0.00343		.	FALSE
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr1	24172310	C	T	0.00502	FUCA1	-	FALSE
chr1	17199303	G	A	0.00062	LOC440570	+	FALSE
chr1	40923019	G	A	0.00019	ZFP69B	+	FALSE
chr7	38764459	T	C	0.00789	VPS41	-	TRUE	AluSp	SINE,Alu
chr3	14526656	A	G	0.00189	SLC6A6	+	FALSE
chr7	33060946	A	G	0.00542	NT5C3A	-	FALSE
chr11	69480680	T	C	0.00252	ORAOV1	-	FALSE	AluSx1	SINE,Alu
chr6	42857057	A	G	0.00020	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr11	48189152	A	C	0.00050	PTPRJ	+	FALSE
chr1	93603188	A	G	0.00374	MTF2	+	FALSE
chr1	201846618	C	A	0.00404	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr12	92537721	A	T	0.00057	BTG1	-	FALSE
chr2	170488325	A	G	0.00698	PPIG	+	FALSE
chr1	15992470	G	A	0.00605		.	FALSE
chr1	53289688	A	G	0.00059	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	89271574	T	C	0.00074	PKN2	+	FALSE
chr1	28564252	A	G	0.00986	ATPIF1	+	FALSE
chr9	17835	A	G	0.00012	WASH1	-	FALSE
chr3	12940346	G	A	0.00411	IQSEC1	-	FALSE
chr2	206986972	T	C	0.00462		.	FALSE	AluJr	SINE,Alu
chr1	145292925	C	T	0.00817	NBPF20	+	FALSE
chr19	58356376	A	G	0.00061	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr1	326539	A	G	0.00719		.	FALSE
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	11782935	A	G	0.00067		.	FALSE	AluSx	SINE,Alu
chr5	125961649	A	G	3.29658E-05	PHAX	+	TRUE	AluSz6	SINE,Alu
chr16	22296860	A	G	0.00041	EEF2K	+	TRUE	AluJo	SINE,Alu
chr1	20519965	G	T	0.00011	UBXN10	+	FALSE
chr1	97144750	T	C	0.00262		.	FALSE
chr1	74672474	G	A	0.00292	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr19	62927	G	A	0.00358	WASH5P	-	FALSE
chr1	26755510	A	G	0.00013	LIN28A	+	TRUE	AluSc	SINE,Alu
chr22	36883967	T	C	0.00051	FOXRED2	-	TRUE	AluSq2	SINE,Alu
chr2	36704035	C	A	0.00012	CRIM1	+	FALSE
chr3	124948047	C	G	0.00670	ZNF148	-	FALSE
chr15	32820880	C	G	0.00672	WHAMMP1	-	FALSE
chr4	120982045	T	C	0.00293	MAD2L1	-	FALSE
chr1	67874697	T	C	0.00305	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr1	36390527	A	G	0.00065		.	FALSE	L2c	SINE,Alu
chr10	89623865	A	C	0.00348	PTEN	+	FALSE
chr1	179044110	A	G	0.00931	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	28662253	A	G	0.00187	MED18	+	TRUE	AluSq2	SINE,Alu
chr15	41590287	A	G	0.00568	OIP5-AS1	+	FALSE
chr1	10521172	T	C	0.00178	DFFA	-	TRUE	AluY	SINE,Alu
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr1	33148196	A	G	0.00054	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	138156	G	T	0.00177	LOC729737	-	FALSE
chr14	92629726	T	A	0.00787	CPSF2	+	FALSE
chr1	165877671	T	C	0.00376	UCK2	+	FALSE	(T)n	SINE,Alu
chr1	1593750	A	G	0.00191	CDK11B,SLC35E2B	-	FALSE
chr5	159492107	A	T	0.00332	TTC1	+	FALSE
chr1	142688511	T	C	0.00089		.	FALSE
chr1	28904397	C	G	0.00125	TRNAU1AP	+	FALSE
chr1	159946750	G	A	0.00105	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chrX	131339006	T	A	0.00405	RAP2C	-	FALSE
chr1	27205044	T	C	0.00312		.	FALSE	AluSx	SINE,Alu
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr2	206986945	T	C	0.00414		.	FALSE	AluJr	SINE,Alu
chr12	98942904	A	G	0.00259	TMPO	+	TRUE	AluSc	SINE,Alu
chr7	21941586	A	C	0.00016	CDCA7L	-	FALSE
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr3	10143199	A	G	0.00496	FANCD2,FANCD2OS	+,-	FALSE	AluSc8	SINE,Alu
chr1	163288931	G	A	0.00284	RGS5	-	FALSE	MamRep1527	SINE,Alu
chr8	12880246	A	G	0.00012	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chr1	16932495	A	C	0.00385	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr6	42045563	A	G	4.21139E-05	TAF8	+	TRUE	AluSz	SINE,Alu
chr1	17394775	G	A	0.00103	PADI2	-	FALSE
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr1	183515428	G	A	0.00232	SMG7	+	FALSE
chr1	20976023	T	C	0.00889	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr5	10436681	G	T	0.00306	MARCH6	+	FALSE
chr2	27838058	C	A	0.00063	ZNF512	+	FALSE
chr1	16889985	T	C	0.00778	NBPF1	-	FALSE
chr1	990984	G	A	0.00787	AGRN	+	FALSE
chr5	125962528	A	G	0.00924	PHAX	+	TRUE	AluSz	SINE,Alu
chr20	18469054	T	C	0.00522	RBBP9	-	TRUE	AluJr	SINE,Alu
chr1	203277245	G	A	0.00115	BTG2	+	FALSE
chr1	10520258	T	C	0.00396		.	FALSE	AluSx	SINE,Alu
chr1	47905553	G	A	0.00098	FOXD2	+	FALSE
chr7	20178420	T	C	0.00053	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr1	142700116	C	T	0.00081	ANKRD20A12P	-	FALSE
chr3	42266349	C	T	0.00942	TRAK1	+	FALSE
chr1	220232138	T	C	0.00011	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr7	154796171	G	A	0.00066	PAXIP1-AS1	+	FALSE	AluSx3	SINE,Alu
chr18	2803231	A	T	0.00638	SMCHD1	+	FALSE
chr4	153898316	A	G	0.00312	FHDC1	+	TRUE	AluJo	SINE,Alu
chr1	45976147	G	A	0.00476	MMACHC	+	FALSE	AluJr	SINE,Alu
chr4	39552646	T	C	0.00555	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr1	58999651	T	G	0.00980	OMA1	-	FALSE
chr1	19670869	A	G	0.00568	CAPZB	-	FALSE
chr4	2940085	T	C	0.00801	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	230876757	G	C	0.00321	FBXO36	+	FALSE
chr2	11323079	T	A	0.00586	ROCK2	-	FALSE	(TA)n	SINE,Alu
chr3	196659892	T	G	0.00620	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr3	195243006	C	A	7.17300E-06	PPP1R2	-	FALSE
chr12	56736075	C	T	0.00262	STAT2	-	FALSE	AluSp	SINE,Alu
chr1	10520258	T	C	0.00152		.	FALSE	AluSx	SINE,Alu
chr6	24719384	A	C	0.00215	C6orf62	-	FALSE	(A)n	SINE,Alu
chr17	26672363	G	A	0.00599	TNFAIP1	+	FALSE
chr1	26901090	C	T	0.00952	RPS6KA1	+	FALSE
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr2	206987738	T	C	0.00859		.	FALSE	AluJb	SINE,Alu
chr4	126849	A	G	0.00018	ZNF718	+	TRUE	AluSc	SINE,Alu
chr2	75883878	T	C	0.00838	MRPL19	+	FALSE	HAL1	SINE,Alu
chr1	226333556	C	A	0.00250	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	43394612	T	C	0.00154	SLC2A1	-	FALSE
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr1	10042987	A	G	8.46336E-05	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	1597020	C	G	0.00021	CDK11B,SLC35E2B	-	FALSE
chr17	27586605	G	A	0.00053	NUFIP2	-	FALSE
chr1	144595935	G	A	0.00837	NBPF20	+	FALSE	AluJb	SINE,Alu
chr7	6442891	G	A	0.00134	RAC1	+	FALSE
chr3	101405564	G	A	0.00354		.	FALSE
chr12	133297934	A	G	9.03426E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr6	31236900	G	A	0.00167		.	FALSE
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr1	150337289	G	T	0.00020	RPRD2	+	FALSE
chr1	53291435	A	G	0.00049	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr7	94297301	G	T	0.00145	PEG10	+	FALSE
chr6	74134804	T	C	0.00386		.	FALSE	AluSz	SINE,Alu
chr1	155851620	A	G	0.00066	SYT11	+	TRUE	AluSq2	SINE,Alu
chr6	16305357	C	T	0.00559	ATXN1	-	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr19	39433140	G	T	0.00260	FBXO17	-	FALSE	AluJb	SINE,Alu
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr4	128758152	A	G	0.00198		.	FALSE	AluSx	SINE,Alu
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr10	119038371	C	T	0.00058	SLC18A2	+	FALSE	(ATTTGGCA)n	SINE,Alu
chr1	171501831	A	G	0.00040	PRRC2C	+	FALSE
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr7	75045694	C	T	1.64957E-05	NSUN5P1	+	FALSE
chr2	72403387	C	A	0.00486	EXOC6B	-	FALSE
chr1	16945027	T	C	0.00819	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr1	228334277	C	T	0.00256	GUK1	+	FALSE

RBP	METAP2
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR952QDQ
Platform	HiSeq
Pubmed ID	32252787

METAP2 - Target Gene Network