Dataset Overview
RBPAATF
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR973QSV
PlatformHiSeq
Pubmed ID32252787

AATF - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of AATF
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of AATF


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1765335454TC9.75664E-07PSMD12-TRUEAluSxSINE,Alu
chr1145689717AG0.00696NBPF20,NBPF10+TRUEAluJbSINE,Alu
chr2232319529TA1.32288E-06NCL-FALSE
chr170696395AT0.00364SRSF11+FALSE
chr236776057AG0.00034CRIM1+FALSE
chr346007823GT6.71801E-06FYCO1-FALSE
chr3195436334AG0.00017LINC00969+TRUEAluJrSINE,Alu
chr145976112AG1.14998E-06MMACHC+TRUEAluJrSINE,Alu
chr2238463408CG0.00644MLPH+FALSE
chr211781593GT0.00551GREB1+FALSE
chr344772983CT0.00795ZNF501+FALSE
chr1212277584GC0.00997DTL+FALSE
chr2201774209TC0.00534.FALSEAluSzSINE,Alu
chr119586520AG0.00659MRTO4+TRUEAluSzSINE,Alu
chr3176739404AG7.21134E-06TBL1XR1-FALSE
chr1688891240CA0.00826GALNS-FALSE
chr6116600774CG0.00180DSE,TSPYL1+,-FALSE
chr211323078CT0.00539ROCK2-FALSE
chr286249906TC0.00352LOC90784-TRUEAluJrSINE,Alu
chr76063467GA0.00620EIF2AK1-FALSE
chr116933583TC0.00050NBPF1-FALSEGA-richSINE,Alu
chr439550085TC3.55103E-05UGDH-AS1,SMIM14+,-FALSEFLAM_CSINE,Alu
chr189447854GT0.00310KYAT3,RBMXL1-FALSE
chr1625269014GC0.00235.FALSE
chr136067752TC9.44020E-05PSMB2-TRUEAluSzSINE,Alu
chr1474526945TC2.53258E-07BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr121810022AT0.00218NBPF3+FALSE
chr124134721TC0.00113HMGCL-FALSE
chr570248478GA0.00229SMN1,SMN2+FALSEL1MC5aSINE,Alu
chr136024788CT5.60663E-14NCDN+FALSE
chr1179044239AG0.00143FAM20B+TRUEAluSxSINE,Alu
chr613790888TC0.00442MCUR1-TRUEAluSx1SINE,Alu
chr1203766875TC3.09664E-07ZC3H11A,ZBED6+FALSE
chr1242012149CT0.00510EXO1+FALSE
chr1145511988AG0.00965NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1144828784AG0.00053NBPF20,NBPF9+FALSE
chr116932428CG0.00017NBPF1-FALSEL1MC2SINE,Alu
chr140307166GA0.00026TRIT1-FALSE
chr525415881TC0.00911.FALSE
chr1880052CT0.00231NOC2L-FALSE
chr1156564726TC0.00995GPATCH4-FALSE
chr136770601GT0.00055THRAP3+FALSE(T)nSINE,Alu
chr1120497841TC0.00673NOTCH2-FALSE
chr194995225GA0.00344F3-FALSE
chr220648946CT0.00531RHOB+FALSE
chr1160966351TC0.00023F11R-TRUEAluSgSINE,Alu
chr1298942690AG3.03569E-06TMPO+TRUEAluScSINE,Alu
chr135319580TA0.00988SMIM12-FALSEAluSgSINE,Alu
chr744841489AG0.00015PPIA+TRUEAluJrSINE,Alu
chr811701485TC0.00027CTSB-TRUEAluSx1SINE,Alu
chr373112378AG0.00261PPP4R2,EBLN2+FALSE
chr3197682724TA0.00556IQCG-FALSE
chr116889642TC0.00017NBPF1-TRUE
chr141236854TA0.00075NFYC+FALSE(T)nSINE,Alu
chr1610626615CT0.00489EMP2-FALSE(T)nSINE,Alu
chr1145273345TC0.00133NBPF20,NOTCH2NL+FALSE
chr1144521099AG0.00682NBPF20+FALSE
chr1749042395TC0.00326SPAG9-TRUEAluJbSINE,Alu
chr285772408GA0.00278GGCX-FALSE
chr928607TC0.00146WASH1-FALSE
chr2135208354AT0.00249MGAT5+FALSE
chr16697343CT0.00054DNAJC11-FALSE
chr5125961210AG0.00966PHAX+TRUEAluSzSINE,Alu
chr340577755AG0.00044ZNF621+TRUEAluSzSINE,Alu
chr1833831189CA0.00763MOCOS+FALSE
chr128800380CA0.00186PHACTR4+FALSE
chr417803537TC7.44979E-05DCAF16-TRUEAluYSINE,Alu
chr1900720AT0.00711KLHL17+FALSE(TTTA)nSINE,Alu
chr1565442678TC2.30704E-07CLPX-TRUEAluSg4SINE,Alu
chr1179326296AG0.00171SOAT1+TRUE
chr1165764473CG0.00403EIF1AD-FALSEAluSz6SINE,Alu
chr2203741654TC0.00611.FALSEAluJrSINE,Alu
chr117735266GA0.00471RCC2-FALSE
chr2244890573TC1.87764E-05LDOC1L-FALSE
chr5149823794GT0.00204RPS14-FALSE
chr128859265CG0.00030RCC1+FALSE
chr1742876398TC0.00697GJC1-FALSEAluSz6SINE,Alu
chr1946053393TC0.00514OPA3-TRUEAluSx1SINE,Alu
chr177166017GA0.00627.FALSE
chr1298943103AG0.00306TMPO+TRUEAluSzSINE,Alu
chr8133859871TA0.00027PHF20L1+FALSE
chr386992161CG0.00050VGLL3-FALSE(GT)nSINE,Alu
chr1209602381GA0.00075MIR205HG+FALSEAluJbSINE,Alu
chr145244419TA0.00027.FALSE
chr358306797AG8.72021E-05.FALSEAluSzSINE,Alu
chr116892275CT0.00087NBPF1-FALSE
chr136602178AT0.00764TRAPPC3-FALSE
chr1910795968CT0.00700ILF3+FALSE
chr1681064560AG0.00014CENPN+TRUEAluSgSINE,Alu
chr1169811639GC0.00134C1orf112+FALSE
chr4129796171AG0.00540JADE1+FALSE
chr1248175093AG0.00690SLC48A1+FALSE
chr11252723TC7.44553E-05CPSF3L-TRUEAluSpSINE,Alu
chr1559952905AG0.00150BNIP2-FALSE
chr310285030GA0.00384IRAK2+FALSE
chr1549419124TC1.84263E-05COPS2-TRUEMARNASINE,Alu
chr154691921GA0.00909SSBP3-FALSE
chr348787052TC0.00866PRKAR2A-TRUEAluSx3SINE,Alu
chr1175128444CA0.00036KIAA0040-FALSE
chr12125512173AG0.00285.FALSEAluSx1SINE,Alu
chr1109474776AG0.00088GPSM2,CLCC1+,-FALSEAluSzSINE,Alu
chr1171509327GA0.00110PRRC2C+FALSE
chr162164735CT0.00016TM2D1-FALSEAluJbSINE,Alu
chr144463185TG0.00397SLC6A9-FALSE
chr1675479250TC0.00568TMEM170A-TRUEAluJbSINE,Alu
chr417803568TC0.00044DCAF16-TRUEAluYSINE,Alu
chr1179813613TC0.00595TOR1AIP2-FALSE
chr439550739TC0.00231UGDH-AS1,SMIM14+,-FALSEAluSx1SINE,Alu
chr133148213AG0.00958SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr110519975TC5.61936E-05.FALSEAluJrSINE,Alu
chr1965139AG0.00777WASH5P-FALSE
chr146093396GA0.00048GPBP1L1-FALSEA-richSINE,Alu
chr2202029999TG0.00350CFLAR+FALSE(TTA)nSINE,Alu
chr110519936TC0.00607.FALSEAluJrSINE,Alu
chr3155660773AG0.00592.FALSEAluSzSINE,Alu
chr2224844864AG7.12020E-05SERPINE2-FALSEL2bSINE,Alu
chr19163290TC0.00130.FALSEAluSpSINE,Alu
chr291847976CT0.00010.FALSETAR1SINE,Alu
chr1206579798TC0.00883SRGAP2+FALSE
chr3107526182TC7.17610E-07BBX+FALSE
chr1947278340AG0.00449SLC1A5-FALSE(AC)nSINE,Alu
chr237429737AG0.00439CEBPZOS,CEBPZ+,-FALSEAluSzSINE,Alu
chr233007710CT0.00743TTC27+FALSE
chr14105676287CT0.00036BRF1-FALSE
chr697592900CA0.00076MMS22L-FALSE
chr1115299504GT0.00067CSDE1-FALSE
chr19161245TC0.00480.FALSEAluSxSINE,Alu
chr144447006TC0.00767B4GALT2+FALSE(CAG)nSINE,Alu
chr2043706946AG0.00434STK4+TRUEAluSx4SINE,Alu
chr1145689271AG0.00250NBPF20,NBPF10+FALSE
chr116891340TA0.00724NBPF1-FALSE
chr178414334CA0.00702FUBP1-FALSEA-richSINE,Alu
chr19160996TC0.00023.FALSEAluJbSINE,Alu
chr471859287CG0.00557DCK+FALSE
chr1146215138AG0.00038NBPF20,NBPF10,NBPF25P+FALSE
chr729962666TA0.00077SCRN1-FALSE
chr9115446725TC0.00037INIP-TRUEAluJrSINE,Alu
chr1145511929AG0.00023NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr228635740TC0.00358FOSL2+FALSE
chr1921367098AG0.00147ZNF431+TRUEAluScSINE,Alu
chr11252513TC0.00013CPSF3L-TRUEAluSpSINE,Alu
chr1145284883AG0.00329NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr119542401TC0.00010LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1246829742TC0.00037CNST+FALSE(TGTG)nSINE,Alu
chr146076467AG0.00118NASP+TRUEAluSxSINE,Alu
chr145120664CT0.00437TMEM53-FALSE
chr1114306369AT0.00341RSBN1-FALSE
chr128865500TA0.00509RCC1+FALSE
chr5122359498AC0.00362PPIC-FALSE(AC)nSINE,Alu
chr553841240AG0.00416SNX18+FALSE
chr1298943102AG0.00250TMPO+TRUEAluSzSINE,Alu
chr286731290TC0.00149CHMP3,RNF103-CHMP3-FALSEL1MC1SINE,Alu
chr11344893AG7.94078E-08.FALSEAluSgSINE,Alu
chrX71492446AT0.00281.FALSE
chr1212618715TC0.00714BORCS5+FALSE
chrX77084007TC0.00141MAGT1-TRUEAluSzSINE,Alu
chr1583826212CT0.00278HDGFRP3-FALSE(CTT)nSINE,Alu
chr1257450118TA0.00669NEMP1-FALSE
chr1668962CT0.00852.FALSE
chr116918717CT0.00550NBPF1-FALSE
chr3112720122TA0.00679GTPBP8+FALSE
chr8101932094TA0.00288YWHAZ-FALSEMER34B-intSINE,Alu
chr489180334TC0.00224PPM1K-TRUEAluSx4SINE,Alu
chr2208620129AG0.00061CCNYL1+TRUEEutTc1-N1SINE,Alu
chr4103183510CT0.00718SLC39A8-FALSE
chr286731654GA0.00931CHMP3,RNF103-CHMP3-FALSEAluJrSINE,Alu
chr9130268407CG0.00902FAM129B-FALSE(CTCA)nSINE,Alu
chr5141691252TC0.00596SPRY4-FALSE
chr125893932TC0.00866LDLRAP1+FALSE
chr113942885CA0.00038PDPN+FALSE
chr7143003517TA0.00251CASP2+FALSEAluYSINE,Alu
chr19160982TC0.00350.FALSEAluJbSINE,Alu
chr555235866TA0.00073IL6ST-FALSE
chr2128644574AG0.00163.FALSE
chr146751319GA0.00085LRRC41-FALSE
chr124296708AG0.00512.FALSE
chr111783889AG0.00746.FALSEAluSqSINE,Alu
chr110044366AG0.00531NMNAT1+TRUEAluSx1SINE,Alu
chr237431521AG0.00783CEBPZOS,CEBPZ+,-FALSEAluScSINE,Alu
chr120238572AT0.00950OTUD3+FALSE
chr1153587308CT0.00077S100A14-FALSE
chr1094414146AG0.00911KIF11+FALSE
chr314986110TC0.00691FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1112258252AG0.00224RAP1A+FALSE
chr128826150AG0.00047PHACTR4+TRUEAluJbSINE,Alu
chr1109475629AG0.00315GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr2190636411CG0.00870ORMDL1-FALSE
chrX77083914TC3.12092E-05MAGT1-TRUEAluSzSINE,Alu
chr452888499GA0.00366SGCB-FALSE
chr12133298255AG0.00016PGAM5+TRUEAluSpSINE,Alu
chr11570928GT0.00173CDK11B-FALSE
chr1179042719AG5.24590E-05FAM20B+TRUEAluSx1SINE,Alu
chr1144601045CT0.00623NBPF20+FALSEL1MC2SINE,Alu
chr1100654813TC0.00352DBT-TRUEAluSzSINE,Alu
chr11595034TC2.36116E-07CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr3150262004AT0.00167SERP1-FALSE
chr4119551832GA0.00522LOC729218+FALSE
chr345722396AG0.00337LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr2201774279TC9.55391E-05.FALSEAluSzSINE,Alu
chr1913883927AG0.00143MRI1+TRUEAluSzSINE,Alu
chr1145369709AG0.00073NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr136068231TC0.00121PSMB2-TRUEAluScSINE,Alu
chr1179043553GA0.00238FAM20B+FALSE
chr41388115CG0.00682CRIPAK+FALSEL1MB4SINE,Alu
chr1100440563AG0.00732SLC35A3+FALSEAluJbSINE,Alu
chr1712915009GA0.00219ELAC2-FALSE
chr1155106227AT0.00137EFNA1+FALSE
chr1545775144TC0.00867SLC30A4-TRUEAluJrSINE,Alu
chr2237962318TC0.00884CDC42EP1+FALSE
chr439552066TC0.00370UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr192862836AG0.00430.FALSEAluJrSINE,Alu
chr6138413269AG0.00743PERP-FALSE
chr8145159707GC0.00158MAF1+FALSE
chr178483452CT0.00094DNAJB4+FALSEL1MB7SINE,Alu
chr19161203TC0.00235.FALSEAluSxSINE,Alu
chr286249961TC0.00262LOC90784-TRUEAluJrSINE,Alu
chr132799530CA8.96009E-06MARCKSL1-FALSE
chr1220231455TC0.00274RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr1167396055TA0.00031POU2F1+FALSE
chr2216908679CT0.00988PECR-FALSE
chr267630980GA0.00225ETAA1+FALSE
chr1145360700CT0.00134NBPF20,NBPF10+FALSE
chr1110551680CT0.00415AHCYL1+FALSE
chr1623682631CT0.00960DCTN5+FALSE
chr138327584TC0.00017INPP5B-TRUEAluSx3SINE,Alu
chr11125526125AG0.00374CHEK1+TRUEFRAMSINE,Alu
chr175671215CT0.00019SLC44A5-FALSE
chr1298942643AG3.59360E-06TMPO+TRUEAluScSINE,Alu
chr6150047362TC0.00076NUP43-TRUEAluScSINE,Alu
chr116894514CT0.00348NBPF1-FALSE
chr111188109CA0.00817MTOR-FALSE
chr3160283126AC0.00564KPNA4-FALSE
chr4165999189TC0.00614TMEM192-TRUEFLAM_CSINE,Alu
chr124296849TC0.00125.FALSE
chr353319203CG0.00453DCP1A-FALSE
chr1298943011AG1.18352E-07TMPO+TRUEAluSzSINE,Alu
chr1256510707GA0.00056RPL41+FALSE
chr298272734AG0.00996ACTR1B-FALSE
chr169204015CT0.00325C16orf72+FALSE
chr136534830AG0.00470.FALSEAluJoSINE,Alu
chr8103841636TC2.19081E-06AZIN1-TRUE
chr140537918TA0.00773CAP1+FALSE
chr2102484490GT0.00635MAP4K4+FALSE
chr1421929044TC3.48024E-06RAB2B-TRUEAluSpSINE,Alu
chr255516897AG1.06852E-06CCDC88A-FALSE(GA)nSINE,Alu
chr2242512138AG9.62871E-05BOK+FALSE
chr174672474GA0.00150FPGT-TNNI3K,FPGT+FALSEX12_DNASINE,Alu
chr128835201CT0.00371SNHG3,RCC1,SNORA73B+FALSEU17SINE,Alu
chr613788222TC0.00490MCUR1-TRUEAluSxSINE,Alu
chr174574751TA0.00246PELP1-FALSE
chr344790781TC0.00074KIAA1143-TRUEAluYSINE,Alu
chr366430374AT0.00275LRIG1-FALSE
chr633384326AT0.00678.FALSE
chr1982994TC0.00432AGRN+FALSE
chr2239127060AG0.00647GTPBP1+FALSE
chr775677504CT0.00768MDH2+FALSE
chr1450361164CT0.00103ARF6+FALSE(T)nSINE,Alu
chr1957802824GA0.00924ZNF460+FALSE
chr1201939479TA0.00645TIMM17A+FALSE
chr1533064148TC1.59288E-05FMN1-FALSE
chr153708528TC0.00057LRP8-FALSE(TA)nSINE,Alu
chr3125248855CA0.00071OSBPL11-FALSE
chr1153533586TC0.00358S100A2-FALSECharlie18aSINE,Alu
chr5175802154CT0.00883.FALSE(CATC)nSINE,Alu
chr1119693495AG0.00996LOC101929147+TRUEAluSxSINE,Alu
chr989626918AG0.00048LOC440173-FALSE
chr116576295GA0.00231FBXO42-FALSEA-richSINE,Alu
chr9128127412AG0.00751.FALSE
chr1320211AG6.69717E-05.FALSEAluJoSINE,Alu
chr1320247038AG0.00391MPHOSPH8+TRUEAluJbSINE,Alu
chr1226809316GA0.00150ITPR2-FALSE
chr1109818161CT0.00864CELSR2+FALSE
chr11595031TC0.00103CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr1946214293CT0.00137FBXO46-FALSE
chr611577085CT1.34362E-05TMEM170B+FALSE
chr3183534170CT0.00090MAP6D1-FALSE
chr1210004332GA0.00813DIEXF+FALSE
chr417802956TC0.00351DCAF16-TRUEAluSzSINE,Alu
chr19163402TC4.95479E-05.FALSEAluSpSINE,Alu
chr2232576431TC0.00593PTMA+FALSE

Differential Expression Gene Analysis