RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr17	36936846	C	T	0.00277	PIP4K2B	-	FALSE
chr2	91843471	C	T	0.00095	LOC654342	-	FALSE
chr1	115313039	A	G	0.00895	SIKE1	-	FALSE
chr2	171699153	C	G	0.00247	GAD1	+	FALSE
chr1	28836975	A	G	0.00202	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr1	38411445	G	A	0.00625	INPP5B	-	FALSE
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr6	42855101	A	G	0.00329	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr7	99636950	A	G	0.00927	ZKSCAN1	+	FALSE	AluSx1	SINE,Alu
chr3	63996230	A	T	0.00309	PSMD6-AS2,PSMD6	+,-	FALSE
chr2	198339541	C	T	0.00465	COQ10B	+	FALSE	(T)n	SINE,Alu
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr2	37429737	A	G	3.16512E-05	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	201845881	A	G	0.00422	IPO9	+	FALSE
chr19	58372320	A	G	0.00510	ZNF587	+	TRUE	AluSz	SINE,Alu
chr1	52817504	T	C	0.00934	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	28825760	A	G	0.00802	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr1	10240859	G	T	0.00312	UBE4B	+	FALSE
chr1	144909956	G	A	0.00310	NBPF20,PDE4DIP	+,-	FALSE
chr3	181430143	G	T	0.00126	SOX2-OT,SOX2	+	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr1	36386884	C	T	0.00590	AGO1	+	FALSE
chr12	123346997	G	C	0.00275	HIP1R	+	FALSE
chr17	65335477	T	C	2.02482E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr4	4291832	A	T	6.49020E-08	LYAR	-	FALSE
chr19	48753070	T	C	0.00214	CARD8	-	TRUE
chr1	46269545	G	A	0.00378	MAST2	+	FALSE
chr3	107763040	G	A	1.74111E-05	CD47	-	FALSE
chr9	132268942	A	G	0.00104	LINC00963	+	TRUE	AluYf1	SINE,Alu
chr1	26898378	C	A	0.00148	RPS6KA1	+	FALSE
chr13	20246634	T	G	0.00071	MPHOSPH8	+	FALSE
chr4	165999188	T	C	0.00751	TMEM192	-	TRUE	FLAM_C	SINE,Alu
chr11	8707397	T	A	0.00046	RPL27A	+	FALSE
chr1	121133733	G	A	0.00552	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr1	145509570	A	G	0.00028	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	55207984	T	A	0.00099	MROH7-TTC4,TTC4	+	FALSE
chr14	90509587	G	T	0.00203	TDP1	+	FALSE
chr2	128644574	A	G	0.00163		.	FALSE
chr1	46828700	A	G	0.00273	NSUN4	+	FALSE
chr1	9331101	A	G	3.95613E-06	H6PD	+	FALSE	AluSx	SINE,Alu
chr5	53841240	A	G	0.00416	SNX18	+	FALSE
chr1	46076543	A	G	0.00156	NASP	+	TRUE	AluSx	SINE,Alu
chr3	14986399	T	C	1.19850E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	120839681	C	A	0.00077	FAM72B	+	FALSE
chr3	47627382	A	T	2.68370E-06	SMARCC1	-	FALSE
chr4	25236017	T	C	2.76644E-09	PI4K2B	+	FALSE
chr20	35409839	T	C	0.00556	SOGA1	-	TRUE	AluSx	SINE,Alu
chr1	11083395	C	T	0.00616	TARDBP	+	FALSE
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr1	59124223	G	A	0.00327	MYSM1	-	FALSE	MIR3	SINE,Alu
chr1	38478446	C	G	4.10892E-09	UTP11	+	FALSE
chr12	98942824	A	G	2.17067E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	1309464	C	T	1.11022E-16	AURKAIP1	-	FALSE
chr1	53291344	A	G	0.00088	ZYG11B	+	FALSE	(A)n	SINE,Alu
chr1	6582425	T	C	0.00039	NOL9	-	TRUE	AluSx1	SINE,Alu
chr4	73922981	T	C	0.00491	COX18	-	TRUE	AluSz	SINE,Alu
chr3	128338880	T	A	0.00828	RPN1	-	FALSE
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr4	17803748	T	A	0.00859	DCAF16	-	FALSE
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr3	195243006	C	A	0.00982	PPP1R2	-	FALSE
chr14	75202704	A	G	2.33511E-06	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr1	100489992	A	G	0.00938	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr3	15112495	T	C	0.00030	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	144615223	C	G	0.00324	NBPF20,NBPF9	+	FALSE
chr1	47840953	A	G	0.00404	CMPK1	+	FALSE
chr9	115446725	T	C	0.00037	INIP	-	TRUE	AluJr	SINE,Alu
chrX	24095066	G	T	0.00603	EIF2S3	+	FALSE
chr1	31732601	A	T	0.00479	SNRNP40	-	FALSE
chr1	113240711	G	A	0.00454	MOV10	+	FALSE
chr1	28661656	A	G	0.00106	MED18	+	TRUE	AluSg	SINE,Alu
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr1	168220489	A	G	0.00525		.	FALSE	AluSz6	SINE,Alu
chr2	70131964	A	C	0.00351	SNRNP27	+	FALSE	L1ME4a	SINE,Alu
chr1	22200473	C	T	0.00039	HSPG2	-	FALSE
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	160969268	C	T	0.00375	NMD3	+	FALSE
chr3	5026730	T	C	0.00488	BHLHE40	+	FALSE
chr21	40195059	A	G	0.00817	ETS2	+	FALSE
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr1	65879488	A	C	0.00560	DNAJC6	+	FALSE
chr1	53288897	A	G	0.00439	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	17394775	G	A	0.00103	PADI2	-	FALSE
chr1	11083183	G	T	0.00342	TARDBP	+	FALSE
chr1	50883798	T	C	0.00156	DMRTA2	-	FALSE
chr8	1730500	A	G	3.50527E-05	CLN8	+	TRUE	AluSx1	SINE,Alu
chr1	89649369	T	C	0.00019	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	144931392	G	A	0.00241	NBPF20,PDE4DIP	+,-	FALSE
chr1	78142911	T	C	0.00925	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr1	53292875	G	T	8.43181E-07	ZYG11B	+	FALSE
chr4	56294628	T	C	0.00234	CLOCK	-	FALSE
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr19	3053116	G	C	0.00276	AES	-	FALSE
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr1	225683161	T	G	0.00168	ENAH	-	FALSE	(T)n	SINE,Alu
chr12	56215097	A	T	0.00051	DNAJC14	-	FALSE
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr1	145100772	A	G	0.00945	NBPF20,SEC22B	+	TRUE	AluSg4	SINE,Alu
chr1	31345067	G	T	0.00804	SDC3	-	FALSE
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr1	1469782	G	C	0.00544	ATAD3A	+	FALSE
chr5	442075	C	A	0.00962	EXOC3-AS1	-	FALSE
chr1	31905886	C	A	0.00273	SERINC2	+	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	148595665	A	G	0.00378	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	206637133	C	T	0.00909	SRGAP2	+	FALSE
chr1	214529170	T	C	0.00670	PTPN14	-	TRUE
chrX	123043142	A	G	0.00045	XIAP	+	TRUE	AluSz	SINE,Alu
chr3	14986150	T	C	7.09959E-07	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr3	73115390	C	T	0.00462	PPP4R2	+	FALSE	(AT)n	SINE,Alu
chr1	16889217	G	C	0.00696	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr3	98517013	T	C	1.12976E-12	DCBLD2	-	FALSE
chr1	67874689	T	C	0.00053	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	53359181	A	G	0.00699	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr2	70677439	A	G	0.00498	TGFA	-	FALSE
chr1	38174987	T	C	0.00032	CDCA8	+	FALSE
chr1	25169201	G	T	0.00341	CLIC4	+	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	52817434	T	C	0.00799	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	118472382	G	T	0.00029	WDR3	+	FALSE
chr2	206981856	T	C	0.00174		.	FALSE	AluJb	SINE,Alu
chrX	123047295	A	G	9.23037E-05	XIAP	+	FALSE	AluSx	SINE,Alu
chr3	156259308	T	C	0.00013	SSR3	-	TRUE	AluSq2	SINE,Alu
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr1	222906426	T	C	0.00322	BROX	+	FALSE	AluSx	SINE,Alu
chr2	74332839	A	G	4.77205E-06	TET3	+	FALSE
chr1	79109352	T	G	0.00818	IFI44L	+	FALSE	LTR26	SINE,Alu
chr5	98109389	T	C	0.00234	RGMB	+	FALSE
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr4	17802920	T	C	0.00805	DCAF16	-	TRUE	AluSz	SINE,Alu
chr14	67852067	A	G	2.77652E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr9	137330709	G	T	6.64722E-05	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr9	131457039	C	T	0.00148	SET	+	FALSE
chr1	26755510	A	G	0.00013	LIN28A	+	TRUE	AluSc	SINE,Alu
chr2	24223291	A	G	0.00512	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr3	45960556	C	T	0.00500	FYCO1	-	FALSE
chr14	70838264	T	C	0.00059	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr4	190878580	A	G	0.00052	FRG1	+	FALSE
chr11	8707394	T	A	4.23595E-06	RPL27A	+	FALSE
chr3	88199298	T	C	0.00048	C3orf38	+	FALSE
chr3	195678003	C	G	0.00146		.	FALSE	L4_A_Mam	SINE,Alu
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr7	55433884	A	C	0.00271	LANCL2	+	FALSE
chr1	10042988	A	G	0.00359	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr11	94801640	A	C	0.00790	SRSF8	+	FALSE
chr1	33086812	T	C	0.00250		.	FALSE	AluY	SINE,Alu
chr1	3371368	C	G	0.00689	ARHGEF16	+	FALSE
chr1	3545186	T	G	0.00314	TPRG1L	+	FALSE
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	24296871	G	C	0.00733		.	FALSE	AluSg	SINE,Alu
chr3	5258985	T	C	1.48069E-09	EDEM1	+	FALSE
chr1	9642832	C	A	0.00082		.	FALSE
chr12	27574182	G	C	0.00014	ARNTL2,ARNTL2-AS1	+,-	FALSE
chr5	149823795	A	T	0.00722	RPS14	-	FALSE
chr1	10519048	T	C	0.00089		.	FALSE	AluSx3	SINE,Alu
chr1	214524178	T	C	0.00265	PTPN14	-	TRUE	AluSx	SINE,Alu
chr1	153720690	G	A	0.00550	INTS3	+	FALSE
chr4	89625427	G	C	0.00025	HERC3	+	FALSE
chr1	19232211	G	A	0.00552	IFFO2	-	FALSE	(GT)n	SINE,Alu
chr2	37330487	T	C	0.00242		.	FALSE	AluSq2	SINE,Alu
chr11	111431662	T	A	0.00204	LAYN	+	FALSE
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr1	46075192	A	C	0.00045	NASP	+	FALSE	A-rich	SINE,Alu
chr7	2473747	A	G	0.00872	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr1	109737090	G	A	0.00173	KIAA1324	+	FALSE
chr20	18468339	T	C	0.00062	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr22	18572728	A	G	0.00050	PEX26	+	TRUE	AluYf1	SINE,Alu
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr5	40832553	A	T	0.00121	RPL37	-	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr22	36883967	T	C	0.00051	FOXRED2	-	TRUE	AluSq2	SINE,Alu
chr1	6684049	G	A	5.41898E-05	PHF13	+	FALSE
chr1	26755536	A	G	0.00515	LIN28A	+	TRUE	AluSc	SINE,Alu
chr11	63724398	T	C	0.00664	NAA40	+	FALSE	AluSx	SINE,Alu
chr4	17633798	A	G	0.00053	FAM184B	-	FALSE	AluSz	SINE,Alu
chr1	40537943	A	C	0.00115	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	54691921	G	A	0.00909	SSBP3	-	FALSE
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr4	177252326	A	G	0.00098	SPCS3	+	TRUE
chr5	31553968	T	C	0.00555	C5orf22	+	FALSE
chr19	42376711	A	G	5.78075E-06		.	FALSE	AluSp	SINE,Alu
chr3	195965115	A	T	0.00098	PCYT1A	-	FALSE
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	59142713	T	C	0.00246	MYSM1	-	FALSE
chr1	44088117	G	T	0.00731	PTPRF	+	FALSE	(T)n	SINE,Alu
chr8	143744407	T	C	0.00697	JRK	-	TRUE	AluJr	SINE,Alu
chr1	13936953	C	T	0.00515	PDPN	+	FALSE
chr7	100278998	C	A	0.00022	GIGYF1	-	FALSE	(A)n	SINE,Alu
chr3	98516118	T	A	0.00541	DCBLD2	-	FALSE
chr2	91847987	C	G	0.00083		.	FALSE	TAR1	SINE,Alu
chr1	145689537	A	G	0.00593	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	208619699	A	G	0.00741	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	152552285	C	A	0.00400	LCE3D	-	FALSE
chr2	11323276	T	C	0.00219	ROCK2	-	FALSE
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr5	74063154	C	G	0.00255	GFM2,NSA2	+,-	FALSE
chr1	36534784	A	G	0.00369		.	FALSE	AluJo	SINE,Alu
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr2	55516908	A	G	0.00016	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	19934879	T	C	0.00454	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr22	41252612	G	A	0.00561	ST13	-	FALSE
chr1	144932200	G	T	0.00492	NBPF20,PDE4DIP	+,-	FALSE
chr1	241795525	A	G	0.00165	OPN3,CHML	-	FALSE	THE1B	SINE,Alu
chr19	42376692	A	G	0.00540		.	FALSE	AluSp	SINE,Alu
chr1	28824041	T	A	0.00627	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr1	145376020	G	A	0.00067	NBPF20,NBPF10	+	FALSE
chr1	115313038	G	A	0.00144	SIKE1	-	FALSE
chr3	86993604	G	T	0.00195	VGLL3	-	FALSE	AluJo	SINE,Alu
chr1	36773405	T	G	0.00546	SH3D21	+	FALSE
chr3	28390351	A	G	1.14010E-06	AZI2	-	FALSE
chr1	93616202	T	C	0.00194	TMED5	-	FALSE
chr1	19244904	G	A	0.00487	IFFO2	-	FALSE
chr4	2940371	T	C	0.00905	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr11	3716835	C	T	0.00828	NUP98	-	FALSE
chr14	74526155	T	C	0.00054	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	86119441	G	A	0.00905	ZNHIT6	-	FALSE
chr1	19586501	A	G	0.00019	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	9330740	G	C	0.00077	H6PD	+	FALSE
chr3	195395399	G	A	0.00556	SDHAP2	+	FALSE
chr1	120612163	C	A	0.00566	NOTCH2	-	FALSE
chr1	51822219	G	A	0.00018	EPS15	-	FALSE
chr10	75534488	C	T	0.00025	FUT11	+	FALSE
chr4	761932	G	A	0.00827	PCGF3	+	FALSE
chr1	109239943	C	T	0.00722	PRPF38B	+	FALSE
chr1	990773	C	T	0.00486	AGRN	+	FALSE
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	220231484	T	C	0.00954	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	10520888	C	T	0.00960	DFFA	-	FALSE
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr11	31452571	A	G	0.00084	DNAJC24	+	TRUE
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr2	46612338	T	G	0.00018	EPAS1	+	FALSE
chr2	227662565	A	C	0.00028	IRS1	-	FALSE
chr1	220231347	T	C	2.85871E-07	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr3	99517466	G	A	0.00088	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	36067760	T	C	0.00032	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	44818528	T	G	0.00486	ERI3	-	FALSE
chr2	85772406	G	A	0.00278	GGCX	-	FALSE
chr3	39138082	C	T	8.26379E-05	WDR48	+	FALSE
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr19	12742509	A	G	0.00717		.	FALSE	AluSx	SINE,Alu
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr1	35319580	T	A	0.00988	SMIM12	-	FALSE	AluSg	SINE,Alu
chr3	111732608	G	A	2.81327E-08	TAGLN3	+	FALSE
chr1	161160459	T	C	0.00270	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr6	26095454	A	G	0.00284	HFE	+	TRUE	AluY	SINE,Alu
chr1	179327008	A	G	0.00168	SOAT1	+	TRUE
chr1	234744480	G	A	0.00237	IRF2BP2	-	FALSE
chr1	10521254	T	C	0.00856	DFFA	-	TRUE	AluY	SINE,Alu
chr1	10520672	T	C	0.00222	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	9328213	A	G	0.00404	H6PD	+	TRUE	AluJr	SINE,Alu
chr3	110853822	G	T	0.00812	NECTIN3	+	FALSE
chr1	28825433	A	G	0.00019	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr19	57818376	A	G	0.00031		.	FALSE	AluJr	SINE,Alu
chr3	42266346	A	G	0.00824	TRAK1	+	FALSE
chr1	19981886	T	G	0.00082	MINOS1-NBL1,NBL1	+	FALSE
chr1	11347164	A	C	0.00667	UBIAD1	+	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	148753329	A	G	7.42327E-05		.	FALSE
chr1	19542310	T	C	0.00510	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	154323560	A	T	0.00013	ATP8B2	+	FALSE
chr1	78414329	G	A	0.00303	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	225156655	C	T	0.00671	DNAH14	+	FALSE
chr1	144912233	C	T	0.00066	NBPF20,PDE4DIP	+,-	FALSE
chr1	28150601	A	T	0.00382	STX12	+	FALSE
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chr1	229439639	T	A	0.00276	RAB4A	+	FALSE
chr20	25428724	A	G	0.00033	GINS1	+	TRUE	AluJb	SINE,Alu
chr2	196602326	T	G	0.00503	SLC39A10	+	FALSE
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr1	67874697	T	C	0.00163	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr19	7116734	A	T	0.00981	INSR	-	FALSE	(A)n	SINE,Alu
chr15	41593268	A	G	0.00084		.	FALSE	AluSz6	SINE,Alu
chr1	101444791	C	T	0.00268	SLC30A7	+	FALSE
chr1	67874731	T	C	0.00565	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	99812815	A	G	0.00245	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	51820588	G	A	0.00807	EPS15	-	FALSE
chr4	165998642	T	C	0.00036	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	6282301	T	C	0.00290	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	11734730	C	T	4.90909E-09	MAD2L2	-	FALSE
chr1	178887208	A	T	0.00239	RALGPS2	+	FALSE
chr1	229730452	G	A	0.00236	TAF5L	-	FALSE
chr1	114449662	T	C	0.00223	DCLRE1B	+	FALSE
chr1	16203171	C	T	3.13656E-06	SPEN	+	FALSE
chr11	118947634	C	T	0.00276	VPS11	+	FALSE
chr1	109746745	A	G	0.00073	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	245017462	G	A	0.00255	HNRNPU,SNORA100	-	FALSE
chr2	179368982	A	C	0.00530	MIR548N,PLEKHA3	+	FALSE
chr17	4721376	A	G	0.00177	PLD2	+	FALSE
chr1	145512024	A	G	0.00084	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	144930596	C	A	0.00356	NBPF20,PDE4DIP	+,-	FALSE
chr1	9163096	T	C	0.00185		.	FALSE	FRAM	SINE,Alu
chr4	248996	A	G	0.00123	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr1	955597	G	T	3.81431E-06	AGRN	+	FALSE
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr1	110136683	A	C	0.00183	GNAI3	+	FALSE
chr1	89447868	G	T	0.00585	KYAT3,RBMXL1	-	FALSE
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr1	53289547	A	G	0.00505	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	16909208	C	G	0.00482	NBPF1	-	FALSE
chr5	75469427	G	A	0.00155	SV2C	+	FALSE
chr1	79115905	T	C	0.00113	IFI44	+	FALSE
chr1	45242861	A	G	0.00911	RPS8	+	TRUE	AluSz	SINE,Alu
chr1	1656557	T	C	0.00012	SLC35E2	-	TRUE	AluSz	SINE,Alu
chr1	145512141	A	G	0.00215	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	51324122	A	G	0.00226	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr12	123253723	A	G	0.00371	DENR	+	TRUE	(AT)n	SINE,Alu
chr1	28800380	C	A	0.00709	PHACTR4	+	FALSE
chr1	117645998	A	G	0.00057		.	FALSE
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr3	48787757	T	C	0.00605	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	47717189	A	G	0.00384	STIL	-	FALSE
chr1	33148367	C	G	0.00439	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr4	84525985	T	G	0.00041	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chrX	123046757	A	G	0.00535	XIAP	+	TRUE	AluSz	SINE,Alu
chr2	232574807	C	G	0.00134	PTMA	+	FALSE
chr7	75958140	C	A	0.00090	YWHAG	-	FALSE
chr6	32796463	A	C	0.00680		.	FALSE	(CCCCA)n	SINE,Alu
chr5	41917694	T	C	0.00784	C5orf51	+	FALSE
chr3	98518156	T	A	7.17121E-05	DCBLD2	-	FALSE
chr16	10625460	T	C	0.00015	EMP2	-	TRUE	AluSx	SINE,Alu
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr1	66100980	A	T	0.00033	LEPR	+	FALSE
chr2	37331750	T	C	0.00067		.	FALSE	AluJb	SINE,Alu
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr2	207027628	A	G	0.00022	EEF1B2	+	FALSE
chr6	3021465	T	C	0.00029	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr7	137612915	G	A	0.00057	CREB3L2	-	FALSE
chr5	174956497	C	T	0.00487	SFXN1	+	FALSE
chr2	170495929	T	A	0.00625		.	FALSE
chr6	42856131	A	G	0.00062	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	3545191	C	T	0.00165	TPRG1L	+	FALSE
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr1	110913120	C	T	0.00627	SLC16A4	-	FALSE
chr1	202993198	C	A	0.00754	TMEM183A	+	FALSE
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr11	72003767	C	A	0.00297	CLPB	-	FALSE
chr6	42854611	A	G	0.00541	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr1	19441410	G	A	7.84348E-05	UBR4	-	FALSE
chr8	128944719	A	T	0.00093	PVT1	+	FALSE
chr1	153914500	G	A	3.11507E-05	DENND4B	-	FALSE
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr3	15114493	T	C	2.42944E-10	RBSN	-	TRUE	AluY	SINE,Alu
chr1	145512166	T	A	0.00736	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	148748339	G	T	0.00666	HLTF	-	FALSE
chr3	191114309	A	T	0.00209	CCDC50	+	FALSE
chr1	1337334	G	T	0.00549	LOC148413,MRPL20	+,-	FALSE
chr2	128602507	T	C	4.02376E-05		.	FALSE	AluSq2	SINE,Alu
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr3	194373833	G	A	0.00217	LSG1	-	FALSE
chr1	245017464	T	A	0.00624	HNRNPU,SNORA100	-	FALSE
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr3	44487862	G	A	0.00262	ZNF445	-	FALSE
chr12	133298428	A	G	7.41792E-11	PGAM5	+	TRUE	AluSp	SINE,Alu
chr13	21547676	T	C	0.00403	LATS2	-	FALSE
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chr4	17802819	T	C	0.00747	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	145688973	A	G	0.00283	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	4834606	T	C	0.00647	AJAP1	+	FALSE
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	117945042	G	A	0.00150	MAN1A2	+	FALSE
chr1	16893813	A	G	0.00385	NBPF1	-	FALSE
chr1	23847464	C	A	0.00895	E2F2	-	FALSE
chr1	53712727	C	T	0.00313	LRP8	-	FALSE
chr2	10942687	C	T	0.00082	PDIA6	-	FALSE
chr1	67875106	C	A	0.00403	SERBP1	-	FALSE	(AC)n	SINE,Alu
chr1	144877176	C	T	0.00010	NBPF20,PDE4DIP	+,-	FALSE
chr3	88104167	T	C	0.00919	CGGBP1	-	FALSE
chr1	10520505	T	C	0.00011		.	FALSE	AluSx1	SINE,Alu
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr4	17804279	G	A	0.00606	DCAF16	-	FALSE	(A)n	SINE,Alu
chr11	76733945	A	T	0.00931	ACER3	+	FALSE	A-rich	SINE,Alu
chr7	79848334	G	T	0.00158	GNAI1	+	FALSE
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr2	206982358	T	C	0.00080		.	FALSE	AluSg7	SINE,Alu
chr12	62928633	G	A	0.00307	MON2	+	FALSE
chr4	57327017	A	G	4.29594E-07	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	10520174	T	C	0.00163		.	FALSE	AluSx	SINE,Alu
chr1	220232138	T	C	0.00011	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	155142927	A	G	0.00877	KRTCAP2	-	FALSE
chrX	123047170	A	G	0.00855	XIAP	+	FALSE	AluSx	SINE,Alu
chr5	125961810	A	G	3.92353E-06	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr3	14986098	T	C	3.23580E-05	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr2	55516938	A	T	0.00265	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr10	75008797	T	C	0.00824	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr5	56177849	C	G	0.00921	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	16889414	T	C	0.00384	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr2	102484488	A	G	0.00192	MAP4K4	+	FALSE
chr3	27763674	T	G	0.00617	EOMES	-	FALSE
chr1	10367058	G	A	0.00328	KIF1B	+	FALSE
chr16	15198598	C	T	0.00494	PDXDC1,PKD1P6-NPIPP1,LOC100505915	+,-	FALSE
chr1	244219905	G	T	0.00772	ZBTB18	+	FALSE
chr1	160966353	T	C	0.00385	F11R	-	TRUE	AluSg	SINE,Alu
chr12	69237019	A	G	2.84819E-05	MDM2	+	TRUE
chr1	145209366	A	G	0.00019	NBPF20,NOTCH2NL	+	FALSE
chr2	206983797	T	C	0.00145		.	FALSE	AluSx	SINE,Alu
chr1	16918783	C	T	0.00252	NBPF1	-	FALSE
chr1	90478690	A	C	0.00035	ZNF326	+	FALSE
chr1	146215189	G	C	0.00226	NBPF20,NBPF10,NBPF25P	+	FALSE
chr3	4403537	C	T	0.00055	SUMF1	-	FALSE	MIR3	SINE,Alu
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr2	206984202	T	C	0.00849		.	FALSE	AluSx	SINE,Alu
chr1	8021778	T	C	0.00495	PARK7	+	FALSE
chr1	201845882	G	A	0.00890	IPO9	+	FALSE
chr1	1534614	T	C	5.67045E-11	FNDC10	-	FALSE
chr12	98942679	A	G	2.08991E-07	TMPO	+	FALSE	AluSc	SINE,Alu
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr2	3193040	G	A	0.00650	TSSC1	-	FALSE
chr1	21671943	T	G	0.00471	ECE1	-	FALSE	(GCTCCCG)n	SINE,Alu
chr1	10520219	T	C	0.00201		.	FALSE	AluSx	SINE,Alu
chr2	197000455	T	C	0.00426	STK17B	-	FALSE	AluSz	SINE,Alu
chr1	32801724	T	G	0.00816	MARCKSL1	-	FALSE
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr1	149576483	G	A	0.00323	LINC00623,LINC00869,LOC103091866	+	FALSE
chr2	3592638	T	C	0.00164	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr1	40306898	T	C	9.21891E-07	TRIT1	-	FALSE
chr3	40503557	T	C	0.00746	RPL14	+	FALSE
chr5	122359498	A	C	0.00038	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	19543352	T	C	0.00086	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr1	6683580	C	A	0.00516	PHF13	+	FALSE

RBP	CSTF2T
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR286OKW
Platform	HiSeq
Pubmed ID	32252787

CSTF2T - Target Gene Network