Dataset Overview
RBPPSIP1
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR611LQB
PlatformHiSeq
Pubmed ID32252787

PSIP1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of PSIP1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of PSIP1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr167874731TC0.00613SERBP1-TRUEAluSx3SINE,Alu
chr2171699153CG0.00247GAD1+FALSE
chr1075009781TC9.15447E-06DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr1168523337TC0.00016CPT1A-TRUEAluSqSINE,Alu
chr357199227AC0.00638IL17RD-FALSE
chr111347150CA0.00366UBIAD1+FALSE
chr238522141GT0.00109ATL2-FALSE
chr110042988AG4.26240E-05NMNAT1+TRUEAluScSINE,Alu
chr1180063334GA2.71425E-05CEP350+FALSE
chr1100550370TA0.00743SASS6-FALSE
chr310193475AG0.00110VHL+TRUEAluJrSINE,Alu
chr1143189476AG0.00160LOC102723769-FALSE
chr6134492481AC0.00340SGK1-FALSE
chr299992822AC0.00266EIF5B+FALSE
chr1171561859AT0.00439PRRC2C+FALSE
chr1298943192AG0.00011TMPO+FALSEAluSzSINE,Alu
chr119542456TC0.00193LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr16283550AT0.00225ICMT-FALSE
chr1179829508TC0.00048TOR1AIP2-TRUEAluJrSINE,Alu
chr1468144079GT0.00974RDH11-FALSE
chr1144598755GA0.00044NBPF20+FALSE
chr2160624383AT0.00142MARCH7+FALSE
chr119934742GT8.15259E-08MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr11152310CT0.00133SDF4-FALSE
chr5118174735TC0.00046DTWD2-TRUEAluYSINE,Alu
chr2230629138CT0.00958TRIP12-FALSE
chr1144618144AG0.00725NBPF20,NBPF9+FALSE
chr224223265AG0.00417UBXN2A+TRUEAluScSINE,Alu
chr116133987TC0.00830UQCRHL-FALSE
chr286364710TC0.00273PTCD3+FALSE
chr211053740CT0.00402KCNF1+FALSE
chr1256510697GA0.00055RPL41+FALSE
chr11255412CA0.00751CPSF3L-FALSE(GCAGG)nSINE,Alu
chr41388115CG0.00682CRIPAK+FALSEL1MB4SINE,Alu
chr647592459AG0.00789CD2AP+FALSE
chr187379498TG0.00784SEP15-FALSE
chr220097874TC0.00769TTC32-FALSE
chr3194373833GA0.00217LSG1-FALSE
chr19330740GC0.00077H6PD+FALSE
chr543175369GT7.56035E-05ZNF131+FALSE
chr388101339TC0.00531CGGBP1-FALSE
chr155207986TA0.00872MROH7-TTC4,TTC4+FALSE
chr126608019TA3.63623E-05.FALSE
chr368685888GA0.00280.FALSE
chr1262928633GA0.00307MON2+FALSE
chr1176733945AT0.00931ACER3+FALSEA-richSINE,Alu
chr116011005GC0.00616PLEKHM2+FALSE(GCG)nSINE,Alu
chr1109239335GT0.00011PRPF38B+FALSE
chr136068325TC0.00049PSMB2-TRUEAluScSINE,Alu
chr1251325349CG0.00225METTL7A+FALSEAluSq2SINE,Alu
chr119542463TC0.00182LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr116112795AG0.00145FBLIM1+FALSE
chr1646831408TC0.00852.FALSEAluSzSINE,Alu
chr144447006TC0.00767B4GALT2+FALSE(CAG)nSINE,Alu
chr233007710CT0.00743TTC27+FALSE
chr136282608GT0.00886AGO4+FALSE
chr441956313AG0.00710TMEM33+FALSE
chr176252687TC0.00021RABGGTB+FALSE
chr261416406TG0.00010USP34-FALSEAluSc8SINE,Alu
chr717384818AG0.00241AHR+TRUEAluScSINE,Alu
chr1184762603TA0.00945FAM129A-FALSEAluSzSINE,Alu
chr119543353TC0.00081LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr2191556847GT9.96724E-06NAB1+FALSE
chr116893686GC0.00296NBPF1-FALSE
chr265496187GA0.00103ACTR2+FALSE
chr226399214GA0.00187GAREM2+FALSE
chr1118502750TC0.00922WDR3,SPAG17+,-FALSE(GT)nSINE,Alu
chr1495572111AC0.00409DICER1-FALSE
chr1227574427AG7.32829E-06ARNTL2,ARNTL2-AS1+,-FALSEAluSzSINE,Alu
chr3156259314TC2.71784E-05SSR3-TRUEAluSq2SINE,Alu
chr133148623AG0.00078SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr237331614TC0.00876.FALSEAluJbSINE,Alu
chr19161550GA0.00043.FALSE
chr16314171GA0.00855GPR153-FALSE
chr261277775AG0.00640PEX13+TRUEAluYSINE,Alu
chr155316322AG0.00172DHCR24-FALSE
chr1144917841TC4.47769E-05NBPF20,PDE4DIP+,-FALSE
chr636894341GA0.00575C6orf89+FALSEGA-richSINE,Alu
chr285132777TC1.13350E-06TMSB10+FALSE
chr347554503TG0.00720ELP6-FALSEAluSxSINE,Alu
chr12133297904AG8.99170E-13PGAM5+TRUEAluJoSINE,Alu
chr119543456TC0.00451LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr168167935AG0.00390GNG12-FALSE
chr16697343CT0.00054DNAJC11-FALSE
chr1563616883AT0.00036CA12-FALSE
chr244459528GA0.00100PPM1B+FALSE
chr274333231CT0.00073TET3+FALSE
chr1149818441TC0.00773.FALSEMLT1DSINE,Alu
chr4186081538TA0.00077CFAP97-FALSE
chr19161245TC0.00071.FALSEAluSxSINE,Alu
chr642855967AG0.00151RPL7L1+TRUEAluSzSINE,Alu
chr175288083TA0.00232RABEP1+FALSE
chr145975345AG9.37661E-05MMACHC+TRUEAluSg7SINE,Alu
chr2206987632TC0.00671.FALSEAluJbSINE,Alu
chr348787052TC0.00866PRKAR2A-TRUEAluSx3SINE,Alu
chr19740894CT0.00097PIK3CD,PIK3CD-AS2+,-FALSEMLT1F1SINE,Alu
chr285772405TA0.00016GGCX-FALSE
chr2128620438CA0.00230AMMECR1L-FALSE
chr2036147563TC0.00313BLCAP-TRUE
chr131905889AG0.00483SERINC2+FALSE
chr340578935AG0.00063ZNF621+TRUEAluJrSINE,Alu
chr2025428616AG0.00817GINS1+FALSEAluJbSINE,Alu
chr2242512138AG7.67847E-06BOK+FALSE
chr596366315TC0.00319.FALSE(TC)nSINE,Alu
chr1625269014GC0.00235.FALSE
chr439550978TC3.11849E-06UGDH-AS1,SMIM14+,-FALSEAluSzSINE,Alu
chr2174090321CA0.00563ZAK,MLK7-AS1+,-FALSEAluSxSINE,Alu
chr2189877305TC0.00612COL3A1+FALSE
chr1757279167AG6.96573E-05PRR11+TRUEAluSq2SINE,Alu
chr1168524809TC0.00129CPT1A-TRUE
chr1151778899TC0.00475RORC-FALSE
chr16314822TC0.00300GPR153-FALSE
chr136067925TC0.00103PSMB2-TRUEAluSzSINE,Alu
chr110519982TC0.00417.FALSEAluJrSINE,Alu
chr1165267608AG0.00038MALAT1+FALSE
chr1120694990CA0.00325.FALSEA-richSINE,Alu
chr11252513TC0.00670CPSF3L-TRUEAluSpSINE,Alu
chr127190857CT0.00160SFN+FALSE
chr1160967843TC0.00247F11R-TRUEAluSpSINE,Alu
chr112082926AG0.00594MIIP+FALSE
chr1450361197GT1.76251E-06ARF6+FALSE
chr110517659TC0.00679.FALSEAluSx1SINE,Alu
chr116842064AC0.00079.FALSEMER41ESINE,Alu
chr115896199GA0.00483DNAJC16+FALSEAluSpSINE,Alu
chr110043363AG0.00429NMNAT1+TRUEAluSx3SINE,Alu
chr146075191CA0.00056NASP+FALSEA-richSINE,Alu
chr1204526611AG0.00402MDM4+TRUEAluSxSINE,Alu
chr642856029AG0.00099RPL7L1+TRUEAluSzSINE,Alu
chr128662105AG0.00846MED18+TRUEAluSq2SINE,Alu
chr131905905GC0.00948SERINC2+FALSE
chr128662199AG0.00011MED18+TRUEAluSq2SINE,Alu
chr537290323TC0.00029.FALSEAluSzSINE,Alu
chr112071680AG0.00127MFN2+FALSE
chr12133297966AG0.00000PGAM5+FALSEAluJoSINE,Alu
chr1681064440AG0.00409CENPN+TRUEAluSgSINE,Alu
chr794060360TG0.00014COL1A2+FALSE
chr5115165591TC0.00407ATG12-TRUEAluSq2SINE,Alu
chr167874697TC0.00190SERBP1-TRUEAluSx3SINE,Alu
chr6108214773CT0.00265SEC63-FALSE
chr116945227GT0.00090CROCCP2-FALSE
chr3197400501CG0.00270RUBCN-FALSE
chr128835937AG2.00244E-07SNHG3,RCC1+TRUEAluSx4SINE,Alu
chr127216740GA0.00801GPN2-FALSE
chr8101932094TA0.00288YWHAZ-FALSEMER34B-intSINE,Alu
chr1156564726TC0.00995GPATCH4-FALSE
chr1120611964GC0.00077NOTCH2-FALSE
chr19160989TC0.00041.FALSEAluJbSINE,Alu
chr230381505TC0.00820YPEL5+FALSE
chr11458255TG0.00438ATAD3A+FALSE
chr237330611TC0.00249.FALSEAluSq2SINE,Alu
chr116933628AG0.00430NBPF1-FALSEGA-richSINE,Alu
chr211728089CT0.00352GREB1+FALSEAluSzSINE,Alu
chr9102744698GT0.00301ERP44-FALSE
chr517276078CA0.00011BASP1+FALSE(TC)nSINE,Alu
chr112082926AG0.00229MIIP+FALSE
chr1470838324TC0.00011SYNJ2BP-COX16,SYNJ2BP-TRUEAluSgSINE,Alu
chr12125511242AG0.00015THRIL-FALSEAluSx1SINE,Alu
chr128662186AG0.00774MED18+TRUEAluSq2SINE,Alu
chr237330534TC6.35640E-05.FALSEAluSq2SINE,Alu
chr856985610AT0.00041RPS20-FALSE
chr126143698TA0.00832SEPN1+FALSE
chr120826790TC0.00208MUL1-FALSE
chr120976023TC0.00889PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr12100562932GT0.00079GOLGA2P5-FALSEAluSgSINE,Alu
chr3195963399GA0.00341.FALSE
chr1765335253TC0.00344PSMD12-TRUEAluSxSINE,Alu
chr830536606TC0.00017GSR-TRUEAluSpSINE,Alu
chr237327666TC0.00028.FALSE
chr112677547GA0.00015DHRS3-FALSE(A)nSINE,Alu
chr139794147AC9.03176E-05MACF1+FALSE
chr119543247TC5.23836E-05LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1332973012AC0.00231BRCA2+FALSE
chr119585519AG6.02134E-06MRTO4+TRUEAluSc8SINE,Alu
chr744917320TC0.00082PURB-TRUEAluSzSINE,Alu
chr116259813AG0.00475SPEN+FALSE
chr153708530TC9.40494E-05LRP8-FALSE(TA)nSINE,Alu
chr629857578AG0.00280.FALSE
chr138411445GA0.00625INPP5B-FALSE
chr7138732191TC0.00746ZC3HAV1-TRUEMER5BSINE,Alu
chr1165179818CT0.00799FRMD8+FALSE
chrX77083617TC3.46806E-05MAGT1-TRUEAluSz6SINE,Alu
chr2170497653TG0.00587.FALSE
chr540852810GT0.00276CARD6+FALSE
chr1623536684TC0.00012EARS2-FALSE
chr1567191CT0.00428.FALSE
chr933039686GA0.00542DNAJA1+FALSE
chr1160967890TC0.00876F11R-TRUEAluSpSINE,Alu
chr349051841CA0.00132WDR6+FALSE
chr1089005496TG0.00138NUTM2A-AS1-FALSEMSTB1SINE,Alu
chr176253041TA0.00646RABGGTB+FALSE
chr618264355GA0.00872DEK-FALSE
chr9131093963AG0.00299COQ4+TRUEAluJoSINE,Alu
chr146075715AG0.00842NASP+TRUEAluSx4SINE,Alu
chr2206984202TC0.00849.FALSEAluSxSINE,Alu
chr3100428460GC5.60949E-08TFG+FALSE
chr642047426AG0.00676TAF8+TRUEAluSz6SINE,Alu
chr722983600TC0.00025FAM126A-FALSE
chr438016395TG0.00537TBC1D1+FALSE
chr652226984GA0.00127PAQR8+FALSE(GCTCGG)nSINE,Alu
chr110517485TC0.00040.FALSEAluSx1SINE,Alu
chr110518591AT0.00811.FALSE
chr1610624926TC0.00029EMP2-TRUEAluSx3SINE,Alu
chr19643054AG5.80579E-05.FALSEAluSxSINE,Alu
chr11152309AT0.00035SDF4-FALSE
chr116945570AG0.00251CROCCP2-FALSE
chr133149496AG0.00504SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr140213412AG0.00235PPIE+TRUEAluSx3SINE,Alu
chr1145511929AG0.00023NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr1197053373GA0.00124ASPM-FALSE
chr1110466466TC0.00377CSF1+FALSE
chr7156764972GA0.00871NOM1+FALSE
chr340503557TC0.00746RPL14+FALSE
chr1918476176AG0.00452PGPEP1+TRUEAluJbSINE,Alu
chr210908893AG0.00087ATP6V1C2+FALSE
chr7924639AG0.00285GET4+TRUEAluJbSINE,Alu
chr120978516TC0.00774PINK1-AS,DDOST-FALSEAluYSINE,Alu
chr1171509327GA0.00110PRRC2C+FALSE
chr120976032TC9.95086E-05PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr111783776CA0.00039.FALSEAluSqSINE,Alu
chr5149823791GT0.00480.FALSE
chr3179116220TC0.00233GNB4-TRUEAluSz6SINE,Alu
chr1145688944AG0.00359NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr1629454295TC0.00019SMG1P6,BOLA2-SMG1P6-TRUETigger4aSINE,Alu
chr7102004769TG5.29897E-05LOC100289561,LOC100630923+FALSE
chr1549454018CT0.00053GALK2+FALSEAluSx1SINE,Alu
chr120224152GA0.00581OTUD3+FALSE
chr1120611964GC0.00130NOTCH2-FALSE
chr629704336GA0.00207.FALSEL1ME3ASINE,Alu
chr153291434AG0.00545ZYG11B+TRUEAluJrSINE,Alu
chr5137891109CG0.00031HSPA9-FALSE
chr12120898661AG2.17580E-05GATC+TRUEAluYSINE,Alu
chr1109465171TA0.00989GPSM2+FALSE
chr417802956TC0.00351DCAF16-TRUEAluSzSINE,Alu
chr3194789330GT0.00699XXYLT1-FALSEAluJrSINE,Alu
chr125570563AT0.00276RSRP1-FALSEAluSINE,Alu
chr153289940AG0.00694ZYG11B+TRUEFRAMSINE,Alu
chr153291382AG0.00132ZYG11B+TRUEAluJrSINE,Alu
chr1227953266GT0.00198KLHL42+FALSE
chr540826638CA0.00749LOC100506548-FALSELTR78SINE,Alu
chr1206635244TA0.00188SRGAP2+FALSE
chr1563616881GA0.00026CA12-FALSE
chr1674698531TC0.00702RFWD3-TRUEAluSx3SINE,Alu
chr199672346TC0.00222.FALSEAluJrSINE,Alu
chr12282776GC0.00011MORN1,LOC100129534-FALSE
chr738764332TC0.00209VPS41-TRUEAluSpSINE,Alu
chr1591044381CA0.00440IQGAP1+FALSE
chr339452945TA0.00462RPSA+FALSEMER5BSINE,Alu
chr1167796144AT0.00581ALDH3B1+FALSEAluSxSINE,Alu
chr1148595665AG0.00141NBPF15+TRUEL1MC4SINE,Alu
chr1205111761AC0.00497DSTYK-FALSE
chr4159176109CA0.00042TMEM144+FALSEMIRSINE,Alu
chr146521559AT0.00177PIK3R3-FALSE
chr1144521099AG0.00682NBPF20+FALSE
chr186049390AG0.00918CYR61+FALSE
chr1619725719CT0.00471KNOP1-FALSE
chr1541591039AG0.00214OIP5-AS1+TRUEAluSx1SINE,Alu
chr174840811AG0.00554SLC25A11-FALSE
chr1109746825AG0.00094KIAA1324+TRUEAluJbSINE,Alu
chr110519910TC0.00735.FALSEAluJrSINE,Alu
chr116918783CT0.00252NBPF1-FALSE
chr2238881699AT0.00802DDX17-FALSE(TA)nSINE,Alu
chr417802919TC0.00857DCAF16-TRUEAluSzSINE,Alu
chr1109475629AG0.00835GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr1339598616GA2.18804E-06PROSER1-FALSE
chr1175129946CT0.00466KIAA0040-FALSE(TCT)nSINE,Alu
chr11683565GA0.00552NADK-FALSE
chr1145281656AT0.00202NBPF20,NOTCH2NL+FALSE
chr1942376692AG0.00540.FALSEAluSpSINE,Alu
chr2224622242TC0.00873AP1S3-TRUEAluSx1SINE,Alu
chr2242122440CA0.00354PPP1R7+FALSE
chr2204055626GT0.00130NBEAL1+FALSE
chr340577752AG0.00111ZNF621+TRUEAluSzSINE,Alu
chr140214148AG0.00426PPIE+TRUEAluSq2SINE,Alu
chr261277443AG0.00362PEX13+TRUEAluSxSINE,Alu
chr333038221CT0.00379GLB1-FALSE
chr273957124AG2.00679E-05TPRKB-FALSE
chr136068231TC0.00935PSMB2-TRUEAluScSINE,Alu
chr1145284883AG0.00329NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr732529936GC0.00027LSM5-FALSE
chr1109818158CT0.00212CELSR2+FALSE
chr1765334967TC0.00045PSMD12-TRUEAluSqSINE,Alu
chr1145513114AG0.00026NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1231154935CT0.00093FAM89A-FALSE
chr3196662641TC0.00059NCBP2-FALSE
chr76202695AC0.00013CYTH3-FALSE
chr1591044382AG0.00453IQGAP1+FALSE
chr145452227GC0.00126EIF2B3-FALSE
chr110517635TC0.00124.FALSEAluSx1SINE,Alu
chr1065382718GA0.00984REEP3+FALSEAluScSINE,Alu
chr1110596569GA0.00867STRIP1+FALSE

Differential Expression Gene Analysis