RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	36534024	A	G	0.00635		.	FALSE	FLAM_A	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr1	145689568	A	G	0.00157	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	90049040	A	G	0.00190	LRRC8B	+	FALSE
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr1	91990445	A	G	5.21972E-05	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	3729182	T	C	0.00300	CEP104	-	TRUE	AluSx3	SINE,Alu
chr7	100031502	C	T	0.00091	MEPCE	+	FALSE
chr1	54691922	T	A	0.00415	SSBP3	-	FALSE
chr3	141879765	T	C	0.00212	GK5	-	TRUE	AluJr	SINE,Alu
chr2	174090331	A	C	0.00901	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	203277245	G	A	0.00115	BTG2	+	FALSE
chr1	118502750	T	C	0.00922	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr4	165998642	T	C	0.00021	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	33960062	A	G	0.00437	ZSCAN20	+	FALSE
chr1	6283260	T	C	0.00071	ICMT	-	TRUE	AluSx3	SINE,Alu
chr8	8750467	A	G	0.00131	MFHAS1	-	FALSE
chr1	145369709	A	G	0.00073	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	225707044	C	T	1.61826E-07	ENAH	-	FALSE
chr4	128758175	A	G	0.00385		.	FALSE	AluSx	SINE,Alu
chr1	120539687	T	C	0.00179	NOTCH2	-	FALSE
chr1	54571491	A	G	0.00538	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	6582425	T	C	0.00039	NOL9	-	TRUE	AluSx1	SINE,Alu
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr1	10518591	A	T	0.00545		.	FALSE
chr7	138730361	T	C	0.00316	ZC3HAV1	-	FALSE	L2-1_AMi	SINE,Alu
chr10	15120179	T	C	3.12210E-06	ACBD7	-	FALSE	L1PA7	SINE,Alu
chr1	1251844	T	C	0.00731	CPSF3L	-	TRUE	AluSq2	SINE,Alu
chr1	27205214	T	C	0.00799		.	FALSE	AluSc	SINE,Alu
chr9	125887703	A	C	0.00067	STRBP	-	FALSE
chr9	86553587	G	A	0.00556	C9orf64	-	FALSE
chr3	44791062	T	C	0.00124	KIAA1143	-	FALSE
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr5	130729522	T	G	0.00506	CDC42SE2	+	FALSE	(T)n	SINE,Alu
chr10	101992298	T	C	0.00409	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	46075663	A	G	0.00240	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	15114317	T	C	0.00113	RBSN	-	TRUE	AluY	SINE,Alu
chr2	46612338	T	G	0.00018	EPAS1	+	FALSE
chr12	69158881	A	G	0.00219	SLC35E3	+	TRUE	AluSp	SINE,Alu
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr3	88104162	T	C	0.00106	CGGBP1	-	FALSE
chr1	54692334	T	C	0.00021	SSBP3	-	FALSE	(T)n	SINE,Alu
chr2	29023117	A	T	0.00805	PPP1CB	+	FALSE
chr3	24019989	C	T	0.00339	NR1D2	+	FALSE
chr1	26755536	A	G	0.00515	LIN28A	+	TRUE	AluSc	SINE,Alu
chr2	77745788	T	C	0.00000	LRRTM4	-	FALSE
chr4	73923605	T	C	0.00366	COX18	-	TRUE	AluSq2	SINE,Alu
chr5	130537789	A	G	0.00822	LYRM7	+	TRUE	AluJb	SINE,Alu
chr4	57327022	A	G	0.00057	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	37328034	T	C	0.00035		.	FALSE
chr1	16935130	C	T	0.00019	NBPF1	-	FALSE
chr1	1662547	T	C	0.00556	SLC35E2	-	TRUE	AluY	SINE,Alu
chr7	7918285	G	A	0.00255	UMAD1	+	FALSE
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr5	40832555	A	T	0.00347	RPL37	-	FALSE
chr4	110635486	A	G	0.00021	PLA2G12A	-	FALSE
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr1	146628742	T	G	0.00102	PRKAB2	-	FALSE
chr1	36770601	G	T	0.00055	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	92975244	T	A	0.00220	EVI5	-	FALSE
chr15	41590973	A	G	1.61675E-06	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr1	168220363	A	G	0.00488		.	FALSE	AluSz6	SINE,Alu
chr5	177658896	A	C	0.00642	PHYKPL	-	FALSE
chr1	120162442	T	C	0.00065	ZNF697	-	FALSE
chr1	19586294	A	G	0.00048	MRTO4	+	FALSE
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr1	10043043	A	G	0.00529	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	205737665	G	T	0.00078	RAB29	-	FALSE	AluSq2	SINE,Alu
chr3	40503554	A	C	0.00197	RPL14	+	FALSE
chr10	101992783	T	C	0.00313	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	148556753	G	A	0.00472		.	FALSE
chr1	200522059	A	T	0.00163	KIF14	-	FALSE	AluSg	SINE,Alu
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr2	174090321	C	A	0.00563	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr16	74655596	T	G	0.00028	RFWD3	-	FALSE	AluSx	SINE,Alu
chr1	160966301	T	C	7.77749E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr6	74134673	T	C	0.00340		.	FALSE	AluSz	SINE,Alu
chr1	180144485	G	A	0.00665	QSOX1	+	FALSE
chr1	36068237	T	C	0.00291	PSMB2	-	TRUE	AluSc	SINE,Alu
chr5	134260212	C	T	0.00264	PCBD2	+	FALSE
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr19	46214293	C	T	0.00137	FBXO46	-	FALSE
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr7	127947979	T	C	0.00257		.	FALSE	AluJr	SINE,Alu
chr17	49042206	T	C	0.00030	SPAG9	-	TRUE	AluJb	SINE,Alu
chr2	106510202	C	T	0.00854	NCK2	+	FALSE
chr1	44818549	C	T	0.00108	ERI3	-	FALSE
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr1	11347152	A	T	0.00401	UBIAD1	+	FALSE
chr1	109475572	A	G	0.00170	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	93616202	T	C	0.00055	TMED5	-	FALSE
chr2	24494671	T	C	0.00244	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr15	41593308	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr7	48146088	A	G	0.00825	UPP1	+	TRUE	AluSq	SINE,Alu
chr3	47386059	T	C	9.15846E-06	KLHL18	+	FALSE
chr4	10076860	G	A	1.69987E-09	WDR1	-	FALSE
chr1	58999651	T	G	0.00332	OMA1	-	FALSE
chr1	85785552	T	C	0.00334	DDAH1	-	FALSE
chr6	29912348	A	G	0.00429		.	FALSE
chr1	40537942	A	C	0.00955	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	109513497	C	T	0.00186	WDR47	-	FALSE
chr2	37331525	T	C	0.00479		.	FALSE	AluJb	SINE,Alu
chr1	10521254	T	C	0.00684	DFFA	-	TRUE	AluY	SINE,Alu
chr1	19545147	T	G	0.00510	LOC101927895,EMC1	+,-	FALSE
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr2	11321880	C	T	0.00064	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr1	180082720	G	A	0.00577	CEP350	+	FALSE
chr1	76227022	A	G	0.00759	ACADM	+	FALSE
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr5	118729619	A	G	0.00586	TNFAIP8	+	FALSE
chr1	154989595	T	C	0.00264	ZBTB7B	+	FALSE
chr2	70316226	A	C	0.00426	PCBP1	+	FALSE
chr1	144851537	A	G	0.00275	NBPF20,PDE4DIP	+,-	FALSE
chr1	32681795	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr1	48764419	C	T	0.00478	SPATA6	-	FALSE
chr7	64441627	G	A	0.00478	ZNF117	-	FALSE
chr5	37289087	T	C	4.02459E-05		.	FALSE	AluSp	SINE,Alu
chr1	6282383	T	C	0.00371	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr2	204294497	C	T	0.00203	ABI2	+	FALSE
chr7	6501829	T	A	0.00081	KDELR2	-	FALSE
chr1	10520099	T	C	5.82547E-06		.	FALSE	AluSx	SINE,Alu
chr5	134061340	T	A	0.00493	SEC24A	+	FALSE
chr3	17202334	A	C	0.00770	TBC1D5	-	FALSE
chr3	150261569	T	G	0.00173	SERP1	-	FALSE
chr1	26143726	G	T	0.00556	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	6583270	C	G	0.00529	NOL9	-	FALSE
chr5	133918134	G	T	0.00404	JADE2	+	FALSE
chr1	156262653	A	C	0.00128	GLMP	-	FALSE
chr2	20818517	T	C	0.00748	HS1BP3	-	FALSE
chr3	15115284	G	A	0.00305	RBSN	-	FALSE
chr19	42375602	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr12	49075983	C	G	0.00321	KANSL2	-	FALSE
chr1	26158907	A	G	0.00061	MTFR1L,AUNIP	+,-	FALSE
chr1	6283548	A	G	0.00286	ICMT	-	FALSE
chr2	196602326	T	G	0.00503	SLC39A10	+	FALSE
chr1	46076543	A	G	0.00420	NASP	+	TRUE	AluSx	SINE,Alu
chr6	29857589	A	G	0.00280		.	FALSE
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr1	709591	G	A	0.00226	LOC100288069	-	FALSE
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr2	9629954	T	C	0.00802	ADAM17	-	FALSE
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr1	63924020	C	T	0.00945	ITGB3BP	-	FALSE
chr21	40567667	A	G	0.00658	BRWD1	-	FALSE
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr1	9163400	T	C	0.00726		.	FALSE	AluSp	SINE,Alu
chr3	13670508	G	A	0.00017	FBLN2	+	FALSE
chr1	201845881	A	G	0.00422	IPO9	+	FALSE
chr1	204521616	A	G	4.81420E-06	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	146215138	A	G	0.00038	NBPF20,NBPF10,NBPF25P	+	FALSE
chr10	101992810	T	C	0.00149	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	36644564	C	T	1.56500E-06	MAP7D1	+	FALSE
chr1	6583515	T	C	0.00528	NOL9	-	TRUE	AluSq	SINE,Alu
chr5	177311217	T	C	0.00840	LOC728554	+	FALSE	A-rich	SINE,Alu
chr19	41097276	C	G	0.00188	SHKBP1	+	FALSE
chr5	6633042	C	T	0.00377	NSUN2	-	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr1	19543247	T	C	5.23836E-05	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	1234671	G	A	0.00100	ACAP3	-	FALSE
chr4	119551832	G	A	0.00522	LOC729218	+	FALSE
chr1	9163839	A	G	0.00237		.	FALSE
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr1	22109952	G	A	0.00889		.	FALSE
chr1	28261664	T	A	7.89583E-05	SMPDL3B	+	FALSE
chr21	33974088	A	G	0.00057	C21orf59	-	FALSE
chr8	30536606	T	C	9.30891E-05	GSR	-	TRUE	AluSp	SINE,Alu
chr2	174090635	T	A	0.00138	ZAK,MLK7-AS1	+,-	FALSE
chr17	73885939	T	C	0.00612	TRIM65	-	TRUE	AluJr	SINE,Alu
chr3	126752934	T	C	0.00038	PLXNA1	+	FALSE
chr1	179043553	G	A	0.00238	FAM20B	+	FALSE
chr12	56532056	G	C	0.00743	ESYT1	+	FALSE
chr1	145282904	A	G	0.00308	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr6	170887693	G	C	0.00045	PDCD2	-	FALSE
chr1	16893813	A	G	0.00255	NBPF1	-	FALSE
chr4	71682381	T	C	0.00037	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr5	162902516	T	C	0.00226	HMMR	+	FALSE
chr1	33148251	A	G	0.00389	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chr1	146650289	C	T	0.00736	PDIA3P1	+	FALSE
chr1	16958064	A	G	0.00446		.	FALSE
chr1	10517273	T	C	0.00583		.	FALSE	AluJr	SINE,Alu
chr1	6354955	G	A	0.00282	ACOT7	-	FALSE
chr1	70718276	G	T	0.00493		.	FALSE
chr5	118173627	T	C	0.00075	DTWD2	-	TRUE
chr3	196771049	T	C	0.00010	DLG1	-	FALSE
chr4	71682341	T	C	0.00584	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr19	24104018	A	G	0.00543	ZNF726	+	FALSE	AluSg4	SINE,Alu
chr1	145500933	C	T	0.00982	NBPF20,NBPF10,LIX1L	+	FALSE
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	62628531	A	G	0.00716	PATJ	+	TRUE	AluSg4	SINE,Alu
chr1	143135057	G	A	0.00403	LOC102723769	-	FALSE
chr5	40832551	A	T	0.00394	RPL37	-	FALSE
chr12	133635613	T	C	0.00024		.	FALSE
chr6	33648144	C	T	0.00453	ITPR3	+	FALSE
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr2	37431639	T	C	0.00160	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr1	23408939	T	A	1.04314E-06	KDM1A	+	FALSE
chr1	6583138	T	C	0.00010	NOL9	-	TRUE	AluSx4	SINE,Alu
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr8	12286573	G	A	0.00052	FAM86B2	-	FALSE
chr2	85772408	G	A	0.00278	GGCX	-	FALSE
chr1	144595935	G	A	0.00860	NBPF20	+	FALSE	AluJb	SINE,Alu
chr7	2294401	A	G	0.00035	SNX8	-	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr1	28865500	T	A	0.00509	RCC1	+	FALSE
chr7	2473761	T	C	0.00126	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr1	19543459	T	C	0.00074	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	46076462	A	G	0.00730	NASP	+	TRUE	AluSx	SINE,Alu
chr1	20976023	T	C	1.28334E-05	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	16889639	T	C	0.00524	NBPF1	-	TRUE
chr1	28661767	A	G	0.00242	MED18	+	TRUE	AluSg	SINE,Alu
chr1	204521724	A	G	0.00851	MDM4	+	TRUE	AluSg	SINE,Alu
chr17	57279284	A	G	0.00149	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	981931	A	G	0.00951	AGRN	+	FALSE
chr1	9161245	T	C	0.00429		.	FALSE	AluSx	SINE,Alu
chr21	34729931	A	G	0.00040	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr3	14986110	T	C	0.00632	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	6583592	T	C	0.00012	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	10517623	T	C	0.00664		.	FALSE	AluSx1	SINE,Alu
chr1	68943486	C	T	0.00079	DEPDC1	-	FALSE	(TTCTCTT)n	SINE,Alu
chr1	10521238	T	C	0.00793	DFFA	-	TRUE	AluY	SINE,Alu
chr17	73885274	T	C	0.00143	TRIM65	-	TRUE	AluSg	SINE,Alu
chr1	17345250	A	T	0.00183	SDHB	-	FALSE
chr1	16933631	G	A	0.00927	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr9	131457814	G	A	0.00021	SET	+	FALSE
chr4	68587786	G	T	0.00658	UBA6-AS1	+	FALSE	MER41B	SINE,Alu
chr1	6582176	T	C	0.00893	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	1337737	G	C	2.51903E-05	MRPL20	-	FALSE
chr1	87573348	C	A	0.00879	HS2ST1	+	FALSE
chr17	41133087	A	G	0.00141	RUNDC1	+	FALSE
chr6	151678865	T	G	0.00016	AKAP12	+	FALSE	(T)n	SINE,Alu
chr1	39470995	A	C	0.00036	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	114515717	G	A	0.00018	HIPK1	+	FALSE
chr1	55541174	A	G	0.00038	USP24	-	FALSE
chr11	65544381	T	C	0.00433	AP5B1	-	TRUE	AluJb	SINE,Alu
chr2	24223291	A	G	0.00512	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	16958047	C	T	2.98219E-05		.	FALSE
chr1	53291420	A	G	0.00069	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	183642652	G	A	0.00309	DNAJC10	+	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr7	29961659	C	G	7.23387E-07	SCRN1	-	FALSE
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr4	129795663	T	A	0.00165	JADE1	+	FALSE
chr4	7761286	T	C	8.48634E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr19	39433139	T	G	0.00235	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	113511341	A	G	0.00283		.	FALSE	AluY	SINE,Alu
chr20	35409839	T	C	0.00556	SOGA1	-	TRUE	AluSx	SINE,Alu
chr2	37331119	T	C	0.00758		.	FALSE	AluSx1	SINE,Alu
chr2	121979980	G	A	0.00525	TFCP2L1	-	FALSE	L1MB8	SINE,Alu
chr3	101576175	T	C	0.00246	NFKBIZ	+	FALSE
chr2	85548074	T	C	0.00428	TGOLN2	-	FALSE
chr1	9160958	T	C	0.00108		.	FALSE	AluJb	SINE,Alu
chr2	85132777	T	C	1.13350E-06	TMSB10	+	FALSE
chr5	151041873	A	G	0.00136	SPARC	-	FALSE

RBP	SUPT6H
Knock-Method	shRNA
RBP Family	S1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR530BOP
Platform	HiSeq
Pubmed ID	32252787

SUPT6H - Target Gene Network