RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	10520331	C	T	0.00043		.	FALSE	AluSx1	SINE,Alu
chr1	154554951	A	G	0.00554	ADAR	-	FALSE
chr1	53291434	A	G	0.00124	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr2	102508659	A	T	0.00261	MAP4K4	+	FALSE
chr1	116943511	T	C	0.00236	ATP1A1,ATP1A1-AS1	+,-	FALSE
chr1	33145978	A	T	0.00288	SYNC,RBBP4	+,-	FALSE
chr1	2335871	G	A	0.00298	RER1	+	FALSE
chr2	103332887	T	A	0.00515	MFSD9	-	FALSE	L2d2	SINE,Alu
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr3	15780233	C	T	1.83528E-06	ANKRD28	-	FALSE	MER11B	SINE,Alu
chr1	33150642	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr1	43272842	A	T	5.93810E-05	SVBP	-	FALSE
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr2	68402794	T	G	0.00630	PNO1	+	FALSE
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr1	45976723	T	C	0.00239	MMACHC,PRDX1	+,-	FALSE
chr1	154455949	T	C	0.00416	SHE	-	FALSE
chr1	8921471	C	T	6.67995E-05	ENO1	-	FALSE
chr1	114226056	C	A	0.00883	MAGI3	+	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr3	10192704	A	G	0.00402	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	67874697	T	C	0.00642	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	53288897	A	G	0.00299	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	53289688	A	G	0.00069	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	10364612	A	C	0.00860	KIF1B	+	FALSE
chr16	10624997	T	C	1.19407E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr2	37328016	T	C	0.00473		.	FALSE
chr1	29446554	C	A	0.00682	EPB41,TMEM200B	+,-	FALSE
chr2	198416735	T	G	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr2	179368982	A	C	0.00530	MIR548N,PLEKHA3	+	FALSE
chr2	277003	A	G	1.77913E-11	ACP1	+	FALSE
chr1	44072018	C	T	0.00783	PTPRF	+	FALSE
chr3	196044972	C	T	0.00258	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr1	16254872	C	A	1.11022E-16	SPEN	+	FALSE
chr1	151966348	C	T	0.00511	S100A10	-	FALSE
chr1	10520715	T	C	0.00119	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	193054574	G	T	0.00511	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr2	37328097	T	C	0.00018		.	FALSE
chr1	100550370	T	A	0.00308	SASS6	-	FALSE
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr3	100428460	G	C	5.60949E-08	TFG	+	FALSE
chr1	33148214	A	G	0.00734	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	85785107	T	C	4.02203E-05	DDAH1	-	FALSE
chr3	57549504	A	G	0.00384	PDE12	+	TRUE	AluJb	SINE,Alu
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr19	11945688	A	G	0.00083	ZNF440	+	TRUE	AluSp	SINE,Alu
chrX	118672600	T	C	0.00080	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	47141718	T	C	0.00978	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr6	114182271	G	A	0.00011	MARCKS	+	FALSE
chr1	9161218	T	C	0.00641		.	FALSE	AluSx	SINE,Alu
chr9	86554217	C	T	0.00272	C9orf64	-	FALSE	AluSq2	SINE,Alu
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr1	89225976	T	C	0.00586	PKN2	+	FALSE
chr1	182993025	C	T	0.00490	LAMC1	+	FALSE
chr12	98942643	A	G	3.59360E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	161160460	T	A	0.00298	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr4	190883001	C	G	0.00859	FRG1	+	FALSE
chr1	179814457	A	C	0.00152	TOR1AIP2	-	FALSE
chr8	145159707	G	C	0.00158	MAF1	+	FALSE
chr1	90493918	G	A	0.00166	ZNF326	+	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr1	10521200	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr7	20178434	T	C	0.00178	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr3	15113885	T	C	0.00094	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	100654789	T	C	0.00014	DBT	-	TRUE	AluSz	SINE,Alu
chr2	37328100	T	C	0.00027		.	FALSE
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr1	19542311	T	C	0.00682	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	15896199	G	A	0.00483	DNAJC16	+	FALSE	AluSp	SINE,Alu
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr5	93018884	A	C	0.00030	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	144852203	T	G	0.00518	NBPF20,PDE4DIP	+,-	FALSE
chr11	125452298	A	G	0.00583	EI24,STT3A-AS1	+,-	FALSE
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr3	15114318	T	C	0.00067	RBSN	-	TRUE	AluY	SINE,Alu
chr7	7283569	G	A	0.00032	C1GALT1	+	FALSE	(AT)n	SINE,Alu
chr4	57326291	A	G	0.00549	PAICS	+	TRUE	AluJr	SINE,Alu
chr5	130537761	A	G	0.00947	LYRM7	+	FALSE	AluJb	SINE,Alu
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr1	10519119	T	C	0.00892		.	FALSE	AluSx3	SINE,Alu
chr1	116235186	A	G	0.00054	VANGL1	+	FALSE
chr1	31838550	T	A	0.00595	FABP3	-	FALSE
chr5	96366326	G	C	0.00120		.	FALSE	(TG)n	SINE,Alu
chr3	179117242	T	C	0.00011	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	16893763	T	C	0.00996	NBPF1	-	FALSE
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr9	33624856	C	T	0.00823	ANXA2P2	+	FALSE
chr1	35650162	C	A	0.00106	SFPQ	-	FALSE
chr6	34231288	A	G	0.00143		.	FALSE
chr13	47325380	G	A	0.00270	LRCH1	+	FALSE
chr17	12915009	G	A	0.00219	ELAC2	-	FALSE
chr3	150262004	A	T	0.00167	SERP1	-	FALSE
chr2	234066969	C	G	0.00590	INPP5D	+	FALSE
chr1	1570928	G	T	0.00173	CDK11B	-	FALSE
chr17	48771489	T	A	0.00101	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr4	120981118	T	A	0.00024	MAD2L1	-	FALSE
chr8	48889659	A	G	1.71928E-05	MCM4	+	TRUE	AluSx3	SINE,Alu
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr1	16902943	T	C	0.00833	NBPF1	-	FALSE
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr16	66765441	G	T	4.44089E-16	DYNC1LI2	-	FALSE	L2c	SINE,Alu
chr1	46164493	T	C	0.00330	IPP	-	TRUE	AluJb	SINE,Alu
chr19	39440966	T	C	0.00011	FBXO17	-	FALSE
chr7	100031497	T	G	0.00119	MEPCE	+	FALSE
chr1	19953129	T	A	0.00934	MINOS1,MINOS1-NBL1	+	FALSE
chr2	61764922	G	A	0.00268	XPO1	-	FALSE
chr1	144931392	G	A	0.00172	NBPF20,PDE4DIP	+,-	FALSE
chr1	45110404	C	T	0.00230	RNF220	+	FALSE
chr1	95660018	T	A	0.00052	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr15	35272171	T	C	0.00183	ZNF770	-	FALSE
chr1	114940216	T	G	0.00074	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	145512930	A	G	5.47366E-06	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr3	5258280	A	G	4.07938E-08	EDEM1	+	FALSE
chr1	93307479	C	A	0.00809	FAM69A,RPL5	+,-	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr3	44790781	T	C	0.00060	KIAA1143	-	TRUE	AluY	SINE,Alu
chr2	98090610	T	C	0.00832	LOC100506076	-	FALSE	L1PREC2	SINE,Alu
chr1	3546132	G	A	0.00113	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	36068275	T	C	0.00098	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	19543353	T	C	0.00091	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	161488401	T	A	0.00622	FCGR2A	+	FALSE
chr15	41590999	A	G	0.00049	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr5	137842895	A	T	0.00038	ETF1	-	FALSE
chr1	146400122	C	G	0.00190	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr11	69468187	G	T	0.00827	CCND1	+	FALSE	(T)n	SINE,Alu
chr1	87213175	A	T	0.00082	SH3GLB1	+	FALSE
chr2	38971644	T	G	0.00021	SRSF7	-	FALSE
chr1	20945055	C	T	0.00542	CDA	+	FALSE
chr3	195415493	C	T	0.00126	LINC00969,SDHAP2	+	FALSE	L1ME2	SINE,Alu
chr14	75202734	A	G	0.00016	FCF1	+	TRUE	AluSc	SINE,Alu
chr2	37328013	T	C	0.00364		.	FALSE
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr4	57326873	A	G	0.00034	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	55207982	C	A	0.00063	MROH7-TTC4,TTC4	+	FALSE
chr1	87573349	C	G	0.00914	HS2ST1	+	FALSE
chr10	75008841	T	C	0.00088	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr2	55459824	C	T	0.00763	RPS27A	+	FALSE
chr17	57281058	A	G	0.00061	PRR11	+	TRUE	AluSz	SINE,Alu
chr2	54120820	G	A	0.00262	PSME4	-	FALSE
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr2	91843429	G	A	0.00037	LOC654342	-	FALSE
chr15	63445744	A	T	0.00539	RPS27L	-	FALSE
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr1	32681795	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr19	19791273	A	G	0.00121	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	6659505	G	A	0.00196	KLHL21	-	FALSE
chr1	145293428	G	C	0.00855	NBPF20,NBPF10	+	FALSE
chr15	90819418	A	G	0.00516		.	FALSE	AluSx	SINE,Alu
chr8	30536015	T	C	0.00286	GSR	-	TRUE	AluJr	SINE,Alu
chr1	183218868	T	G	0.00091	NMNAT2	-	FALSE
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chrX	77083897	T	C	0.00184	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	148556726	G	T	0.00758		.	FALSE
chr17	72206017	T	A	6.66319E-05	RPL38	+	FALSE
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	119574537	G	A	0.00783	WARS2	-	FALSE
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr1	100440553	A	G	0.00553	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr1	154315369	C	T	0.00022	ATP8B2	+	FALSE
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	54571374	A	G	0.00280	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr2	39212567	T	G	0.00546	SOS1	-	FALSE
chr1	36067925	T	C	4.53272E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr19	24103951	A	G	0.00082	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr16	19715518	T	C	0.00502		.	FALSE	AluSg	SINE,Alu
chr2	37328042	T	C	6.80414E-06		.	FALSE
chr1	10519190	T	C	0.00971		.	FALSE	AluSx3	SINE,Alu
chr5	180001389	G	A	0.00138	CNOT6	+	FALSE
chr2	101622883	T	A	0.00440	RPL31	+	FALSE
chr1	233514975	G	T	0.00584	MLK4	+	FALSE
chr1	176132119	G	C	0.00134	RFWD2	-	FALSE	L3b	SINE,Alu
chr1	205686523	G	T	2.43057E-05	NUCKS1	-	FALSE
chr12	19671149	C	T	0.00315	AEBP2	+	FALSE
chr1	2336210	C	T	0.00175	RER1	+	FALSE
chr4	84215880	T	C	4.10546E-05	HPSE	-	TRUE	AluJr	SINE,Alu
chr7	65844563	G	A	0.00581	LINC00174	-	FALSE
chr6	18264326	T	A	0.00067	DEK	-	FALSE
chr3	191097966	T	C	1.34670E-13	CCDC50	+	FALSE
chr1	1273359	T	G	0.00254	DVL1	-	FALSE
chr1	7737791	A	C	0.00017	CAMTA1	+	FALSE
chr1	99164434	G	A	0.00911	SNX7	+	FALSE
chr10	71909957	G	T	0.00853		.	FALSE
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	203277253	A	G	0.00624	BTG2	+	FALSE
chr6	12120445	A	G	0.00037	HIVEP1	+	FALSE
chr2	202038657	A	G	0.00354		.	FALSE	AluSx1	SINE,Alu
chr1	20980225	G	T	0.00055	DDOST	-	FALSE
chr4	128756632	A	G	0.00602		.	FALSE	AluSx	SINE,Alu
chr4	77997064	A	G	0.00283	CCNI	-	FALSE	(A)n	SINE,Alu
chr1	94335191	C	T	0.00382	DNTTIP2	-	FALSE
chr1	100548780	A	T	0.00791	MFSD14A	+	FALSE
chr1	206516261	C	T	0.00020	SRGAP2	+	FALSE
chr16	11931210	G	T	0.00292	RSL1D1	-	FALSE
chr1	36787880	C	T	0.00023	EVA1B	-	FALSE
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr1	46164678	T	C	0.00773	IPP	-	TRUE	AluJb	SINE,Alu
chr7	20177519	T	C	0.00885	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	168218574	A	G	0.00148		.	FALSE	AluSz	SINE,Alu
chr1	157043632	C	T	0.00085		.	FALSE
chr5	79923430	T	C	0.00817	DHFR	-	TRUE	AluJr	SINE,Alu
chr2	206987108	T	C	0.00015		.	FALSE	AluSx	SINE,Alu
chr6	42857057	A	G	0.00020	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	16812082	A	G	0.00545	CROCCP3	-	FALSE
chr1	161338504	C	G	6.09223E-05		.	FALSE
chr3	183900729	T	C	0.00074	AP2M1	+	FALSE	MIR3	SINE,Alu
chr19	19791274	A	G	7.64703E-05	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	145323668	G	C	0.00241	NBPF20,NBPF10	+	FALSE
chr11	769393	T	C	0.00186	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr8	37613106	T	C	0.00626	ERLIN2	+	FALSE
chr17	49042381	T	C	0.00931	SPAG9	-	TRUE	AluJb	SINE,Alu
chr1	145694181	A	G	0.00052	NBPF20,NBPF10	+	TRUE	AluSz	SINE,Alu
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr8	41399648	A	G	0.00037	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr1	144816555	C	T	0.00530	NBPF20,NBPF9	+	FALSE
chr4	177252326	A	G	0.00554	SPCS3	+	TRUE
chr2	61276750	A	G	0.00231	PEX13	+	TRUE	AluSp	SINE,Alu
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr2	203743821	T	C	0.00880		.	FALSE	AluSx3	SINE,Alu
chr1	19586519	A	G	0.00015	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	109474776	A	G	0.00149	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr10	98281480	T	A	0.00620	TM9SF3	-	FALSE
chr1	59121768	G	C	0.00196	MYSM1	-	FALSE
chr1	143135063	C	A	0.00397	LOC102723769	-	FALSE
chr1	23833607	A	T	0.00831	E2F2	-	FALSE
chr10	15120279	T	C	0.00255	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	62628606	A	G	0.00027	PATJ	+	TRUE	AluSg4	SINE,Alu
chr14	64152514	T	C	1.52259E-06	SGPP1	-	TRUE	(TA)n	SINE,Alu
chr2	75882576	T	C	0.00328	MRPL19	+	FALSE
chr2	37328034	T	C	5.88540E-05		.	FALSE
chrX	152916233	C	A	0.00758	DUSP9	+	FALSE
chr1	179327010	A	G	0.00085	SOAT1	+	TRUE
chr4	88059663	G	T	0.00165	AFF1	+	FALSE	(GT)n	SINE,Alu
chr1	184675814	G	A	0.00048	EDEM3	-	FALSE
chr1	32377391	G	A	0.00439	PTP4A2	-	FALSE
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr16	81064440	A	G	0.00409	CENPN	+	TRUE	AluSg	SINE,Alu
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr3	141668922	T	C	0.00937	TFDP2	-	TRUE	AluSz	SINE,Alu
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr2	3592674	C	A	0.00011	RNASEH1	-	FALSE
chr1	46076462	A	G	1.23194E-07	NASP	+	TRUE	AluSx	SINE,Alu
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr1	38423181	T	G	0.00793	SF3A3	-	FALSE	AluJo	SINE,Alu
chr6	13788294	T	C	0.00017	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	36067811	T	C	0.00439	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	61764922	G	C	0.00679	XPO1	-	FALSE
chr3	10290513	C	A	0.00577	TATDN2	+	FALSE
chr12	56510710	A	C	0.00050	RPL41	+	FALSE
chr1	200521412	G	A	0.00588	KIF14	-	FALSE
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	37331531	T	C	0.00389		.	FALSE	AluJb	SINE,Alu
chr1	8877520	A	T	0.00308	RERE	-	FALSE
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chr10	13320129	A	G	0.00830	PHYH	-	FALSE
chr1	146651038	T	G	0.00964	PDIA3P1	+	FALSE
chr1	25570692	C	T	0.00095	RSRP1	-	FALSE
chr1	10042987	A	G	0.00149	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr2	86364707	G	T	0.00131	PTCD3	+	FALSE
chr3	44791553	T	C	0.00298	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr11	6478619	G	A	0.00656	TRIM3	-	FALSE
chr17	5288081	C	T	0.00518	RABEP1	+	FALSE
chr1	19665557	A	C	0.00365	CAPZB	-	FALSE
chr5	7878179	C	T	0.00014	MTRR	+	FALSE
chr1	16928737	C	T	0.00796	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	155572129	C	T	0.00082	SLC33A1	-	FALSE
chr1	154128836	A	T	0.00090	TPM3	-	FALSE
chr8	48889823	C	A	0.00770	MCM4	+	FALSE	AluSx3	SINE,Alu
chr1	46076543	A	G	0.00989	NASP	+	TRUE	AluSx	SINE,Alu
chr2	198368113	T	A	1.78788E-05	HSPE1,HSPE1-MOB4	+	FALSE
chr1	28422194	A	C	0.00018		.	FALSE
chr1	201438095	C	G	3.49736E-05	PHLDA3	-	FALSE
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr3	15114398	T	C	0.00758	RBSN	-	TRUE	AluY	SINE,Alu
chr17	61897188	G	T	0.00465	FTSJ3	-	FALSE
chr13	52952680	G	A	7.53266E-06	THSD1	-	FALSE
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr3	33458266	T	C	0.00035	UBP1	-	FALSE
chr1	900505	G	C	0.00388	KLHL17	+	FALSE
chr1	28662105	A	G	0.00846	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr11	118620064	A	G	0.00192	DDX6	-	FALSE	(A)n	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr2	37329300	T	C	0.00092		.	FALSE	AluJr4	SINE,Alu
chr1	95123291	G	C	0.00040	LINC01057	-	FALSE	LTR7Y	SINE,Alu
chr4	25278988	T	C	2.09007E-08	PI4K2B	+	FALSE
chr2	277314	G	A	0.00867	ACP1	+	FALSE
chr8	95805038	A	G	1.06873E-05	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr1	244871041	T	A	0.00590	DESI2	+	FALSE
chr20	43343908	G	A	9.03009E-05	KCNK15-AS1,WISP2	+,-	FALSE	(GC)n	SINE,Alu
chr4	177252326	A	G	0.00098	SPCS3	+	TRUE
chr1	28662186	A	G	8.22643E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	205686523	G	T	0.00640	NUCKS1	-	FALSE
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr3	196670099	A	C	6.06146E-06	NCBP2-AS2	+	FALSE
chr1	15993514	C	T	6.34808E-08		.	FALSE	AluSx4	SINE,Alu
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr7	17384354	A	G	0.00908	AHR	+	TRUE	AluSx	SINE,Alu
chr1	175161849	G	T	0.00030	KIAA0040	-	FALSE
chr1	35817023	G	C	0.00547	ZMYM4	+	FALSE
chr2	17965699	C	T	0.00497	GEN1	+	FALSE	L1M4	SINE,Alu
chr1	40145850	G	C	0.00035	HPCAL4	-	FALSE
chr1	25570565	G	A	0.00094	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	28825465	A	G	0.00756	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	45280099	A	G	0.00286		.	FALSE	AluYk3	SINE,Alu
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr1	40307166	G	A	0.00026	TRIT1	-	FALSE
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr3	99515750	A	G	0.00216	MIR548G	-	FALSE
chr2	69689806	T	C	0.00175	AAK1	-	TRUE	AluSg	SINE,Alu
chr2	207027628	A	G	0.00022	EEF1B2	+	FALSE
chr1	48764419	C	T	0.00478	SPATA6	-	FALSE
chr1	1252723	T	C	0.00367	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	69690885	T	C	0.00970	AAK1	-	TRUE	AluSx3	SINE,Alu
chr1	25890189	A	G	0.00072	LDLRAP1	+	FALSE
chr3	184766301	T	C	0.00025	VPS8	+	FALSE
chr3	49395693	C	G	0.00243	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr1	36067838	T	C	0.00081	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr4	187628394	G	A	0.00000	FAT1	-	FALSE
chr1	145512951	A	G	4.65248E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	16932536	C	T	0.00114	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	78414329	G	A	0.00922	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	46075724	A	G	0.00990	NASP	+	TRUE	AluSx4	SINE,Alu
chr12	69237020	A	G	0.00378	MDM2	+	TRUE
chr3	33038222	A	T	0.00379	GLB1	-	FALSE
chr13	32973012	A	C	0.00231	BRCA2	+	FALSE
chr4	13604034	T	C	3.45500E-11	BOD1L1	-	FALSE
chr3	196079293	T	C	0.00308		.	FALSE	AluSx	SINE,Alu
chr5	132028864	G	A	0.00593	KIF3A	-	FALSE
chr5	150647736	G	T	0.00964	GM2A	+	FALSE	AluSc	SINE,Alu
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr8	128752643	G	A	4.26326E-14	MYC	+	FALSE	GA-rich	SINE,Alu
chr11	94801633	A	T	0.00808	SRSF8	+	FALSE
chr15	90820095	A	G	6.27827E-07		.	FALSE	AluY	SINE,Alu
chr2	206987229	T	C	0.00743		.	FALSE	AluSx	SINE,Alu
chr3	17201882	C	T	0.00259	TBC1D5	-	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr1	19984100	G	C	0.00563	MINOS1-NBL1,NBL1	+	FALSE
chr2	65496075	C	T	0.00972	ACTR2	+	FALSE
chr1	212277581	C	T	4.20326E-05	DTL	+	FALSE
chr1	139233	C	A	0.00653	LOC729737	-	FALSE
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr1	45671429	G	A	0.00054	ZSWIM5	-	FALSE
chr1	12073252	A	G	0.00990	MFN2	+	FALSE
chr2	33812352	A	G	0.00223	FAM98A	-	FALSE
chr2	9629953	C	A	0.00105	ADAM17	-	FALSE
chr1	10517653	T	C	0.00228		.	FALSE	AluSx1	SINE,Alu
chr1	21780000	G	T	0.00153	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr1	36924851	T	C	0.00493	MRPS15	-	TRUE	AluJb	SINE,Alu
chr9	36216895	T	C	0.00130	GNE	-	TRUE	AluY	SINE,Alu
chr1	36534784	A	G	0.00369		.	FALSE	AluJo	SINE,Alu
chr19	36575645	G	A	0.00590	WDR62	+	FALSE
chr1	3545191	C	T	0.00597	TPRG1L	+	FALSE
chr1	100490274	A	G	0.00234	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr5	149829068	C	T	0.00038	RPS14	-	FALSE
chr1	45244053	A	G	0.00621	RPS8	+	FALSE
chr1	1469546	G	A	0.00331	ATAD3A	+	FALSE
chr1	145369706	T	C	0.00186	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr6	74134008	T	C	0.00337		.	FALSE	AluY	SINE,Alu
chr1	16893721	A	C	0.00043	NBPF1	-	FALSE
chr1	67518534	C	T	0.00682	SLC35D1	-	FALSE
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	179070187	G	A	0.00556	ABL2	-	FALSE
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr5	131715011	A	G	0.00761	SLC22A5	+	FALSE
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	117532509	C	A	0.00521	PTGFRN	+	FALSE
chr9	130268408	T	C	6.51633E-05	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr14	63841404	T	A	0.00470	PPP2R5E	-	FALSE	(T)n	SINE,Alu
chr3	179115635	T	C	0.00453	GNB4	-	TRUE	AluSg7	SINE,Alu
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr8	30536606	T	C	0.00017	GSR	-	TRUE	AluSp	SINE,Alu
chr16	18794286	C	T	0.00633	RPS15A	-	FALSE
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr1	78483452	C	T	0.00739	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	6282215	T	C	0.00187	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	74134673	T	C	0.00340		.	FALSE	AluSz	SINE,Alu
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr1	46075663	A	G	0.00543	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	98298600	C	T	3.56177E-11	CPOX	-	FALSE
chr1	160965287	T	C	0.00766	F11R	-	TRUE	AluSc	SINE,Alu
chr1	15990912	T	C	0.00133		.	FALSE	AluSx3	SINE,Alu
chr9	70483778	A	T	0.00026	CBWD5	-	FALSE
chr2	174086933	C	A	0.00457	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr8	100890423	C	A	0.00113	COX6C	-	FALSE
chr14	75202669	A	G	1.13156E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	36067886	T	C	0.00786	PSMB2	-	TRUE	AluSz	SINE,Alu
chr14	50361170	C	T	0.00096	ARF6	+	FALSE	(T)n	SINE,Alu
chr4	119555188	C	A	0.00205	LOC729218	+	FALSE
chr4	17804852	T	C	0.00056	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	16892938	T	C	0.00569	NBPF1	-	FALSE
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr3	183861243	A	G	0.00049	EIF2B5	+	FALSE
chr5	6668842	C	T	4.46208E-05	SRD5A1	+	FALSE
chr3	24019989	C	T	0.00339	NR1D2	+	FALSE
chr2	37331736	T	C	0.00165		.	FALSE	AluJb	SINE,Alu
chr1	144521099	A	G	0.00682	NBPF20	+	FALSE
chr17	57279258	A	G	0.00114	PRR11	+	TRUE	AluSq2	SINE,Alu
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr1	200589813	C	A	1.20032E-05	KIF14	-	FALSE
chr12	15035081	T	C	0.00951	MGP	-	FALSE
chr3	15112398	T	C	2.78799E-05	RBSN	-	TRUE	AluSq2	SINE,Alu
chr2	37330435	T	C	3.14905E-06		.	FALSE	AluSq2	SINE,Alu
chr2	99813003	A	G	0.00226	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	16932428	C	G	0.00197	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	198416734	A	T	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr12	109039869	T	C	0.00795	CORO1C	-	FALSE
chr6	149915565	A	G	0.00198	RPS18P9	+	FALSE
chr1	179044181	A	G	0.00083	FAM20B	+	TRUE	AluSx	SINE,Alu
chr19	39433142	T	A	0.00215	FBXO17	-	FALSE	AluJb	SINE,Alu
chr1	138156	G	T	0.00048	LOC729737	-	FALSE
chr2	209221291	T	G	0.00020	PIKFYVE	+	FALSE	AluSx	SINE,Alu
chr1	10520767	T	C	5.51501E-05	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	1344998	A	G	0.00461		.	FALSE	AluSg	SINE,Alu
chr7	29960812	T	A	1.34773E-06	SCRN1	-	FALSE
chr8	12880246	A	G	0.00012	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr1	6585215	C	T	0.00286	NOL9	-	FALSE	FAM	SINE,Alu
chr1	16958047	C	T	0.00193		.	FALSE
chr4	7764148	G	A	2.22190E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	53289686	A	G	0.00222	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr10	72187740	C	A	0.00668	EIF4EBP2	+	FALSE
chr6	42981525	G	C	0.00041	MEA1	-	FALSE
chr1	36602178	A	T	0.00764	TRAPPC3	-	FALSE
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr3	136667405	T	C	0.00190	NCK1	+	FALSE
chr1	154557171	G	A	0.00045	ADAR	-	FALSE	A-rich	SINE,Alu
chr3	186288565	A	G	0.00680	DNAJB11	+	FALSE
chr1	26161104	C	A	0.00030	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr1	155695985	A	G	0.00031	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	179045672	G	A	0.00920	FAM20B	+	FALSE
chr19	46053667	A	G	0.00995	OPA3	-	FALSE
chr1	16935130	C	T	0.00019	NBPF1	-	FALSE
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr1	38279683	A	T	0.00685	MTF1	-	FALSE
chr2	191745653	T	G	0.00799	GLS	+	FALSE
chr1	156692049	A	T	6.25184E-05	ISG20L2	-	FALSE
chr2	217366534	A	G	0.00733		.	FALSE	AluSz	SINE,Alu
chr5	118174735	T	C	0.00139	DTWD2	-	TRUE	AluY	SINE,Alu
chr2	86249961	T	C	0.00368	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	206566904	T	C	0.00084	SRGAP2	+	FALSE
chr1	225683180	G	T	0.00076	ENAH	-	FALSE
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr1	24288535	A	T	0.00271	PNRC2	+	FALSE
chr1	28826085	A	G	0.00153	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	116609185	G	A	0.00187	SLC22A15	+	FALSE
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr17	4849959	G	T	0.00636	PFN1	-	FALSE
chr3	196293764	G	C	0.00392	WDR53	-	FALSE
chr3	56654600	C	G	2.66528E-07	CCDC66,FAM208A	+,-	FALSE
chr5	90074268	G	A	0.00240	ADGRV1	+	FALSE
chr4	2743678	G	A	0.00170	TNIP2	-	FALSE
chr1	1650787	T	C	0.00590	CDK11B,CDK11A	-	FALSE
chr5	130537789	A	G	0.00822	LYRM7	+	TRUE	AluJb	SINE,Alu
chrX	118673382	T	C	0.00021	CXorf56	-	TRUE	AluSz	SINE,Alu
chr1	87811105	G	A	0.00025	LMO4	+	FALSE
chr1	159946783	A	G	0.00097	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr1	6283305	T	C	0.00554	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	14986447	T	C	2.03372E-08	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr21	34730077	A	G	0.00019	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	70904800	G	T	0.00772	CTH	+	FALSE
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr1	8413317	A	C	0.00957	RERE	-	FALSE
chr16	427820	C	T	0.00240	TMEM8A	-	FALSE
chr4	152020779	G	T	0.00925	RPS3A	+	FALSE
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr1	19542463	T	C	0.00182	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	195243002	C	A	0.00358	PPP1R2	-	FALSE
chr10	79570873	G	T	0.00292	DLG5	-	FALSE
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr5	40832552	G	T	1.14652E-07	RPL37	-	FALSE
chr1	179042692	A	G	4.94937E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu

RBP	APOBEC3C
Knock-Method	shRNA
RBP Family	APOBEC_N
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR012DAF
Platform	HiSeq
Pubmed ID	32252787

APOBEC3C - Target Gene Network