Dataset Overview
RBP
CSTF2
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR815JDY
Platform
HiSeq
Pubmed ID
32252787
CSTF2 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CSTF2
Show
10
25
50
100
entries
Search:
Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
8.64
6.42
-0.54150
0.00084
0.00267
AAGAB
10.84
16.64
0.41901
0.00020
0.00074
AAR2
20.83
27.92
0.30957
0.00080
0.00255
AARS2
6.39
8.16
0.24972
0.02855
0.05799
AASDH
5.62
5.08
-0.37716
0.00447
0.01169
AASDHPPT
19.37
26.41
0.48641
4.64256E-07
2.87429E-06
AATF
19.34
27.02
0.38717
0.00013
0.00050
ABAT
27.42
71.55
1.32416
5.37077E-65
1.08319E-62
ABCA11P
3.52
7.75
1.05507
2.14789E-10
2.19421E-09
ABCA12
0.03
0.2
2.51640
9.57977E-07
5.67243E-06
Showing 1 to 10 of 7,103 entries
Previous
1
2
3
4
5
…
711
Next
Function Analysis of Target Genes of CSTF2
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101579184_101579299_101578845_101579026_101590063_101590190
0.00002
-0.051
DataSet_01_3
View details
ABCC2
101579193_101579299_101578845_101579026_101590063_101590190
0.00003
-0.045
DataSet_01_3
View details
ACLY
40052872_40052902_40049285_40049427_40054001_40054092
0.00862
-0.098
DataSet_01_3
View details
ADD3
111892062_111892158_111890120_111890244_111893083_111893969
0.00060
-0.235
DataSet_01_3
View details
AFP
74313330_74313393_74309063_74309161_74315051_74315184
0.00000
-0.111
DataSet_01_3
View details
AFP
74313178_74313393_74309082_74309161_74315051_74315184
0.00000
-0.03
DataSet_01_3
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00000
-0.03
DataSet_01_3
View details
AHSA2
61413114_61413216_61412636_61412753_61413580_61413632
0.00000
-0.16
DataSet_01_3
View details
AKAP8L
15509440_15509577_15508524_15508666_15510112_15510221
0.00672
-0.052
DataSet_01_3
View details
ALB
74272345_74272478_74270017_74270123_74275071_74275166
0.00000
0.203
DataSet_01_3
View details
Showing 1 to 10 of 175 entries
Previous
1
2
3
4
5
…
18
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABHD4
23072294_23072362_23072492_23072667_23070571_23070660
0.00974
-0.132
DataSet_01_3
View details
AGO2
141545566_141545668_141549418_141549553_141542514_141542714
0.00921
-0.338
DataSet_01_3
View details
ALDH7A1
125918542_125918666_125919623_125919704_125912770_125912903
0.00683
-0.094
DataSet_01_3
View details
ANP32B
100760837_100760960_100767245_100767435_100756912_100757062
0.00000
0.193
DataSet_01_3
View details
ARMC10
102727315_102727384_102732923_102733100_102727076_102727211
0.00300
-0.148
DataSet_01_3
View details
BIVM
103483914_103484047_103486815_103486902_103474414_103474509
0.00003
0.613
DataSet_01_3
View details
CAPZA2
116544230_116544437_116546316_116546396_116538825_116538889
0.00110
-0.297
DataSet_01_3
View details
COL18A1
46927474_46927507_46929269_46929515_46925751_46925880
0.00471
0.091
DataSet_01_3
View details
DDAH2
31695949_31696069_31696227_31696301_31695319_31695469
0.00700
-0.467
DataSet_01_3
View details
DDI2
15964801_15964929_15970016_15970145_15959933_15960060
0.00881
-0.212
DataSet_01_3
View details
Showing 1 to 10 of 91 entries
Previous
1
2
3
4
5
…
10
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ARFIP2
6499270_6499428_6499285_6499428_6498947_6499122
0.00689
-0.084
DataSet_01_3
View details
CEP95
62527043_62527140_62527043_62527136_62528007_62528140
0.00760
-0.137
DataSet_01_3
View details
EIF6
33872499_33872573_33872528_33872573_33871978_33872295
0.00805
-0.025
DataSet_01_3
View details
FGFR4
176514419_176514636_176514419_176514543_176516550_176516694
0.00475
0.285
DataSet_01_3
View details
MARS
57909702_57909941_57909702_57909774_57910027_57910120
0.00467
-0.042
DataSet_01_3
View details
MTSS1L
70713012_70713226_70713217_70713226_70712154_70712312
0.00030
0.412
DataSet_01_3
View details
P4HA2
131533898_131534133_131534013_131534133_131531104_131531173
0.00187
-0.107
DataSet_01_3
View details
PPM1H
63225863_63226059_63225893_63226059_63195595_63195940
0.00269
0.218
DataSet_01_3
View details
RPLP2
810271_810357_810271_810321_811596_811645
0.00000
-0.083
DataSet_01_3
View details
RPS12
133136156_133136363_133136156_133136227_133137599_133137702
0.00473
-0.009
DataSet_01_3
View details
Showing 1 to 10 of 11 entries
Previous
1
2
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AGPAT1
32138713_32138847_32138713_32138759_32139073_32139282
0.00170
-0.218
DataSet_01_3
View details
APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00001
-0.018
DataSet_01_3
View details
APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00017
-0.036
DataSet_01_3
View details
ATP6V1G2-DDX39B
31508258_31508354_31508258_31508311_31509726_31509925
0.00000
0.592
DataSet_01_3
View details
ATXN7L3
42273401_42273468_42273401_42273447_42273763_42273786
0.00398
-0.076
DataSet_01_3
View details
CCNL2
1333612_1333798_1333612_1333722_1333976_1334051
0.00517
-0.018
DataSet_01_3
View details
DDX5
62496792_62497000_62496792_62496891_62498127_62498187
0.00114
-0.078
DataSet_01_3
View details
DHRS2
24110874_24112428_24112360_24112428_24109002_24109104
0.00005
-0.044
DataSet_01_3
View details
EIF4A2
186506080_186506209_186506098_186506209_186505591_186505671
0.00028
0.051
DataSet_01_3
View details
ENTPD2
139945353_139945581_139945353_139945503_139945662_139945822
0.00493
-0.183
DataSet_01_3
View details
Showing 1 to 10 of 30 entries
Previous
1
2
3
Next
Show
10
25
50
100
entries
Search:
RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7124084_7124377_7124084_7124149_7124242_7124377
0.00509
-0.031
DataSet_01_3
View details
AHSA2
61412636_61413632_61412636_61412753_61413580_61413632
0.00160
-0.156
DataSet_01_3
View details
ANKRD65
1356176_1356640_1356176_1356385_1356479_1356640
0.00777
0.167
DataSet_01_3
View details
APEX1
20923736_20924260_20923736_20923862_20924072_20924260
0.00834
-0.025
DataSet_01_3
View details
ARL16
79649063_79650624_79649063_79650156_79650565_79650624
0.00757
-0.084
DataSet_01_3
View details
BTBD3
11898425_11899249_11898425_11898659_11898981_11899249
0.00042
-0.325
DataSet_01_3
View details
CIAO1
96934194_96935093_96934194_96934396_96935005_96935093
0.00834
-0.056
DataSet_01_3
View details
CIRBP
1271138_1271466_1271138_1271245_1271327_1271466
0.00636
-0.015
DataSet_01_3
View details
CNBP
128889921_128890381_128889921_128890123_128890288_128890381
0.00363
-0.033
DataSet_01_3
View details
CPSF1
145620312_145620550_145620312_145620397_145620479_145620550
0.00680
-0.034
DataSet_01_3
View details
Showing 1 to 10 of 36 entries
Previous
1
2
3
4
Next
Differential Variants in RNA (DVRs)
Show
10
25
50
100
entries
Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
38326547
C
T
0.00212
INPP5B
-
FALSE
AluJr
SINE,Alu
chr1
225678910
T
C
2.51322E-05
ENAH
-
TRUE
AluSx1
SINE,Alu
chr1
16933631
G
A
0.00927
NBPF1
-
FALSE
GA-rich
SINE,Alu
chr1
35644502
A
T
0.00702
SFPQ
-
FALSE
(A)n
SINE,Alu
chr1
185014720
A
G
0.00989
RNF2
+
FALSE
chr1
32508478
C
T
0.00509
KHDRBS1
+
FALSE
chr1
11347164
A
C
0.00667
UBIAD1
+
FALSE
chr1
144930940
T
C
0.00181
NBPF20,PDE4DIP
+,-
FALSE
chr1
180169330
C
T
0.00015
FLJ23867
+
FALSE
MIR
SINE,Alu
chr1
74665493
G
A
0.00128
FPGT-TNNI3K,FPGT
+
FALSE
Showing 1 to 10 of 322 entries
Previous
1
2
3
4
5
…
33
Next
Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression