RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	66546100	A	G	0.00849	TMBIM4	-	FALSE
chr12	3150853	C	G	0.00158		.	FALSE	(CCTCCCTG)n	SINE,Alu
chr8	124262075	G	T	7.79989E-05	ZHX1-C8orf76,ZHX1	-	FALSE
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	154320942	A	G	0.00579	ATP8B2	+	FALSE
chr16	48386442	A	G	0.00964	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	154989595	T	C	0.00264	ZBTB7B	+	FALSE
chr1	10517290	T	C	0.00119		.	FALSE	AluJr	SINE,Alu
chr1	8921471	C	T	6.67995E-05	ENO1	-	FALSE
chr5	6633042	C	T	0.00377	NSUN2	-	FALSE
chr8	30536152	T	C	0.00015	GSR	-	TRUE	AluJr	SINE,Alu
chr1	20978304	T	A	0.00018	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr3	41281407	G	T	0.00011	CTNNB1	+	FALSE
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr2	206987629	T	C	0.00208		.	FALSE	AluJb	SINE,Alu
chr2	171849612	T	C	0.00364	TLK1	-	FALSE
chr1	206566195	C	T	0.00052	SRGAP2	+	FALSE
chr3	179117128	T	C	0.00276	GNB4	-	TRUE	AluSz	SINE,Alu
chr2	202031433	A	G	0.00611	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr1	179326908	A	G	0.00037	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	160967755	C	T	0.00563	F11R	-	FALSE	(T)n	SINE,Alu
chr2	39009425	A	G	0.00607		.	FALSE	AluSx3	SINE,Alu
chr1	1018144	T	C	0.00019	C1orf159	-	FALSE
chr2	61764922	G	A	0.00268	XPO1	-	FALSE
chr1	115299505	A	T	0.00064	CSDE1	-	FALSE
chr1	95658358	T	C	0.00633	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	67874849	T	C	0.00266	SERBP1	-	TRUE	AluSx	SINE,Alu
chr4	57326873	A	G	0.00034	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	144614931	G	A	0.00469	NBPF20	+	FALSE
chr2	240954005	C	A	0.00021	NDUFA10	-	FALSE
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr2	191556849	A	T	0.00158	NAB1	+	FALSE
chr1	19586519	A	G	0.00310	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	99813015	A	G	0.00139	MRPL30	+	TRUE	AluJb	SINE,Alu
chr5	134260212	C	T	0.00264	PCBD2	+	FALSE
chr12	125512507	A	G	0.00276		.	FALSE	AluY	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr6	3022544	T	C	0.00440	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr15	71124666	C	A	4.50846E-10	LARP6	-	FALSE
chr3	45721905	A	G	0.00238	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	1152310	C	T	0.00133	SDF4	-	FALSE
chr2	37331531	T	C	0.00148		.	FALSE	AluJb	SINE,Alu
chr1	109476363	A	G	0.00172	GPSM2,CLCC1	+,-	FALSE
chr1	8938808	C	A	0.00030	ENO1	-	FALSE
chr3	42636141	G	A	0.00224	SEC22C,SS18L2	+,-	FALSE
chr4	39550981	T	C	5.85020E-07	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr7	29962664	A	C	0.00077	SCRN1	-	FALSE
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr1	26582091	G	A	0.00172	CEP85	+	FALSE
chr2	197184321	C	T	0.00923	HECW2	-	FALSE
chr1	15993013	G	A	1.61862E-10		.	FALSE
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr2	201735790	G	C	0.00671	PPIL3	-	FALSE
chr9	34088029	C	T	0.00501	DCAF12	-	FALSE
chr4	17803568	T	C	0.00044	DCAF16	-	TRUE	AluY	SINE,Alu
chr3	10192747	A	G	0.00893	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	93299394	A	G	0.00655	FAM69A,RPL5	+,-	FALSE
chr1	16932428	C	G	0.00017	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	179852074	T	C	0.00033	TOR1AIP1	+	FALSE
chr5	151041885	G	T	0.00644	SPARC	-	FALSE
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr1	33148795	A	G	0.00513	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr3	53265957	T	C	0.00493	TKT	-	FALSE
chrX	2824317	T	C	0.00047	ARSD	-	TRUE	AluJb	SINE,Alu
chr9	124103030	G	A	0.00193	STOM	-	FALSE	AluSq2	SINE,Alu
chr7	21941589	T	A	0.00535	CDCA7L	-	FALSE
chr1	16919961	C	T	0.00133	NBPF1	-	FALSE
chr7	137612916	G	C	0.00356	CREB3L2	-	FALSE
chr7	65844562	T	C	0.00695	LINC00174	-	FALSE
chr1	51434560	G	A	0.00685	CDKN2C	+	FALSE
chr5	43527402	T	C	0.00539	PAIP1	-	FALSE
chr17	65335459	T	C	5.16289E-08	PSMD12	-	TRUE	AluSx	SINE,Alu
chr3	10192744	A	G	3.36147E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	98409998	G	T	0.00261	TMEM131	-	FALSE
chr1	16112795	A	G	0.00106	FBLIM1	+	FALSE
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu
chr12	131356731	T	C	2.96756E-07	RAN	+	FALSE	(GGCCGG)n	SINE,Alu
chr11	93474585	T	G	0.00531	TAF1D	-	FALSE
chr1	86118417	T	G	0.00653	ZNHIT6	-	FALSE
chr1	70696395	A	T	0.00364	SRSF11	+	FALSE
chr1	19542310	T	C	9.10228E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr1	27202981	T	C	0.00660		.	FALSE	AluSq2	SINE,Alu
chr1	23835919	C	T	0.00872	E2F2	-	FALSE
chr1	955597	G	T	3.81431E-06	AGRN	+	FALSE
chr8	11701297	T	C	0.00288	CTSB	-	TRUE	AluSx1	SINE,Alu
chr2	69688754	T	C	0.00319	AAK1	-	TRUE	AluSq2	SINE,Alu
chr9	19376249	G	T	5.55883E-05		.	FALSE
chr5	34906661	T	C	9.12853E-06	RAD1	-	TRUE	AluJo	SINE,Alu
chr5	64964623	T	C	1.14652E-05	SGTB	-	TRUE	AluSx1	SINE,Alu
chr1	85785554	C	T	0.00365	DDAH1	-	FALSE
chr3	18427924	G	T	0.00312	SATB1	-	FALSE
chr1	10042911	A	G	0.00043	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	5837878	G	A	7.66453E-07	SOX11	+	FALSE
chrM	10307	A	C	0.00046		.	FALSE
chr15	91044387	T	G	0.00077	IQGAP1	+	FALSE
chr3	197612406	A	G	0.00450		.	FALSE	AluSp	SINE,Alu
chr4	89181456	T	C	0.00024	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr7	197428	G	A	3.11254E-09	FAM20C	+	FALSE
chr5	52389815	A	G	0.00486	ITGA2	+	TRUE
chr5	6633042	C	T	0.00348	NSUN2	-	FALSE
chr14	53242652	T	C	0.00081	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	70718271	G	A	0.00273		.	FALSE
chr1	93307477	A	G	6.92611E-06	FAM69A,RPL5	+,-	FALSE
chr1	204524840	A	G	0.00557	MDM4	+	TRUE	AluSx	SINE,Alu
chr7	55433884	A	C	0.00723	LANCL2	+	FALSE
chr1	204521512	A	G	7.69882E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	19984461	C	T	0.00112	MINOS1-NBL1,NBL1	+	FALSE
chr5	37289087	T	C	4.02459E-05		.	FALSE	AluSp	SINE,Alu
chr1	16576290	G	A	0.00104	FBXO42	-	FALSE	A-rich	SINE,Alu
chr2	172412829	T	A	0.00477	CYBRD1	+	FALSE
chr6	31324643	G	C	5.95617E-06		.	FALSE
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	11084103	T	A	0.00968	TARDBP	+	FALSE
chr2	161130521	G	A	0.00454	RBMS1	-	FALSE
chr1	145369556	A	G	0.00086	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr3	101284940	T	C	8.16697E-05	TRMT10C	+	FALSE
chr3	32567573	G	A	0.00701	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr4	57326879	A	G	0.00198	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	75230606	C	T	0.00077	TYW3	+	FALSE
chr1	145282904	A	G	0.00542	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr12	80168993	G	T	0.00513	PPP1R12A	-	FALSE
chrX	77083914	T	C	3.12092E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	33149508	A	G	0.00107	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr19	59093998	A	G	2.36787E-07	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr2	128602974	A	T	4.23982E-05		.	FALSE	AluSp	SINE,Alu
chr1	94995491	C	T	0.00036	F3	-	FALSE	AluSx	SINE,Alu
chr1	10517276	T	C	0.00283		.	FALSE	AluJr	SINE,Alu
chr17	10578246	A	G	0.00093		.	FALSE
chr17	61897188	G	T	0.00465	FTSJ3	-	FALSE
chr1	1252309	A	T	0.00403	CPSF3L	-	FALSE	AluSx	SINE,Alu
chr1	1337334	G	T	0.00549	LOC148413,MRPL20	+,-	FALSE
chr1	3545191	C	T	0.00165	TPRG1L	+	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE
chr5	140751128	C	G	0.00647	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3	+	FALSE
chr2	9661424	G	C	0.00130	ADAM17	-	FALSE
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr3	179506721	G	C	0.00018	USP13	+	FALSE
chr1	65298791	A	T	0.00242	RAVER2	+	FALSE
chr1	27879800	T	G	0.00473	AHDC1	-	FALSE	MIRb	SINE,Alu
chr1	28564252	A	G	0.00118	ATPIF1	+	FALSE
chr17	43002237	C	A	0.00141	KIF18B	-	FALSE
chr1	145116325	T	C	0.00101	NBPF20,SEC22B	+	FALSE	(TTTTGTTT)n	SINE,Alu
chr17	53239140	C	T	0.00954	STXBP4	+	FALSE	MIR	SINE,Alu
chr4	128756738	A	G	0.00408		.	FALSE	AluSx	SINE,Alu
chr1	27332852	C	T	0.00829	FAM46B	-	FALSE
chr1	40975260	G	C	0.00902	EXO5	+	FALSE
chr5	134062606	T	G	0.00193	SEC24A	+	FALSE
chr4	57326329	A	G	0.00077	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	205320515	A	G	0.00022	KLHDC8A	-	FALSE
chr1	45976262	A	C	0.00010	MMACHC	+	FALSE
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr8	23087535	A	G	0.00491	LOC389641	+	FALSE	AluSx1	SINE,Alu
chr1	1570921	C	T	0.00411	CDK11B	-	FALSE
chr1	26774224	A	G	0.00349	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr17	65335362	T	C	3.02375E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	145512073	A	G	0.00056	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	1345002	A	G	0.00141		.	FALSE	AluSg	SINE,Alu
chr1	16892274	A	T	0.00371	NBPF1	-	FALSE
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr1	1662754	T	C	0.00107	SLC35E2	-	TRUE	AluY	SINE,Alu
chr2	202030311	T	A	0.00732	CFLAR	+	FALSE	SVA_A	SINE,Alu
chr1	86049362	C	A	0.00140	CYR61	+	FALSE
chr1	116243380	G	A	0.00426	CASQ2	-	FALSE
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr1	180943529	C	T	0.00297	STX6	-	FALSE
chr20	62598815	C	T	0.00711	ZNF512B	-	FALSE
chr12	69237057	A	G	0.00259	MDM2	+	TRUE
chr1	36770621	G	T	0.00424	THRAP3	+	FALSE	(T)n	SINE,Alu
chr6	109785887	T	C	7.14632E-06	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr12	133298121	A	G	1.85542E-11	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr15	41593268	A	G	0.00084		.	FALSE	AluSz6	SINE,Alu
chr1	169768080	C	A	5.53708E-05	C1orf112	+	FALSE
chr1	28607959	C	A	0.00215	SESN2	+	FALSE
chr1	38326643	T	C	0.00458	INPP5B	-	TRUE	AluJr	SINE,Alu
chr17	42877584	T	C	0.00489	GJC1	-	TRUE	AluSg	SINE,Alu
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr9	80886829	C	A	6.48097E-06		.	FALSE	(TTTCTTTT)n	SINE,Alu
chr19	39981168	A	G	0.00446	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	179829505	T	C	0.00592	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	28661653	A	G	0.00483	MED18	+	TRUE	AluSg	SINE,Alu
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr1	94703005	C	G	0.00180	ARHGAP29	-	FALSE
chr3	45722047	A	G	0.00085	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr2	101622700	A	G	0.00387	RPL31	+	FALSE
chr1	110604747	G	A	0.00101	ALX3	-	FALSE
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr1	162497738	G	C	0.00390	UHMK1	+	FALSE
chr11	8708789	A	G	0.00237	RPL27A	+	TRUE	AluSp	SINE,Alu
chr3	20025663	G	T	0.00612	RAB5A,PP2D1	+,-	FALSE
chr2	98388810	G	T	6.24900E-05	TMEM131	-	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr5	141690772	C	T	0.00632	SPRY4	-	FALSE
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr4	119956116	G	T	0.00442	SYNPO2	+	FALSE
chr2	128602462	T	C	0.00298		.	FALSE	AluSq2	SINE,Alu
chr12	100556267	T	C	0.00071	GOLGA2P5	-	FALSE
chr1	28835847	A	G	0.00553	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr17	46803538	C	T	0.00492	HOXB13	-	FALSE
chr6	3021352	T	C	0.00082	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr1	9160963	T	C	0.00354		.	FALSE	AluJb	SINE,Alu
chr1	65720330	A	C	0.00211		.	FALSE
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr1	19665566	A	C	0.00028	CAPZB	-	FALSE
chr3	66430372	T	A	0.00300	LRIG1	-	FALSE
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	19585554	A	G	0.00117	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr3	40503559	C	G	0.00018	RPL14	+	FALSE
chr3	15483744	A	G	0.00083	EAF1	+	FALSE
chr2	103333653	T	C	0.00426	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr12	52710715	G	A	0.00729	KRT83	-	FALSE
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr4	248996	A	G	0.00123	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	117644949	C	G	0.00440	TTF2	+	FALSE
chr1	120455441	A	G	0.00872	NOTCH2	-	FALSE
chr1	15992470	G	A	0.00605		.	FALSE

RBP	YBX3
Knock-Method	shRNA
RBP Family	CSD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR494VSD
Platform	HiSeq
Pubmed ID	32252787

YBX3 - Target Gene Network