RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	1550392	C	T	0.00617		.	FALSE	AluSg	SINE,Alu
chr10	23408278	C	T	0.00042	MSRB2	+	FALSE
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	6282400	T	C	0.00321	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	100019496	A	G	0.00789	REV1	-	FALSE
chr1	45280109	A	G	0.00251		.	FALSE	AluYk3	SINE,Alu
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	69746296	C	T	0.00620	AAK1	-	FALSE
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr1	45975740	C	G	0.00096	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	36067886	T	C	0.00925	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	148951398	C	T	0.00068	LOC645166	+	FALSE
chr1	150281090	A	G	3.10555E-05	MRPS21	+	TRUE	AluSz	SINE,Alu
chr7	30544360	G	A	0.00170	GGCT	-	FALSE
chr3	10192717	A	G	3.16601E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	1650797	A	G	0.00798	CDK11B,CDK11A	-	FALSE
chr12	7052982	T	G	0.00199	C12orf57	+	FALSE	U7	SINE,Alu
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr2	32535797	A	G	0.00910		.	FALSE	AluJb	SINE,Alu
chr1	10519982	T	C	3.22355E-05		.	FALSE	AluJr	SINE,Alu
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr14	53242859	T	C	9.31997E-05	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	117531813	T	C	0.00751	PTGFRN	+	FALSE
chr1	184762524	T	C	0.00778	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr1	150937963	A	G	0.00658	CERS2	-	FALSE	G-rich	SINE,Alu
chr3	41281407	G	T	0.00288	CTNNB1	+	FALSE
chr1	22853141	G	A	0.00060	ZBTB40	+	FALSE
chr1	53288897	A	G	0.00160	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	183643241	C	A	0.00108	DNAJC10	+	FALSE
chr1	200827638	A	G	0.00665	CAMSAP2	+	FALSE
chr1	9815354	T	G	0.00212	CLSTN1	-	FALSE
chr5	65452100	G	T	0.00600	SREK1	+	FALSE	(TTTTTG)n	SINE,Alu
chr1	145281656	A	T	0.00839	NBPF20,NOTCH2NL	+	FALSE
chr15	90819423	A	G	3.09408E-05		.	FALSE	AluSx	SINE,Alu
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chr3	40577810	A	G	0.00896	ZNF621	+	TRUE	AluSz	SINE,Alu
chr15	91044379	T	G	0.00440	IQGAP1	+	FALSE
chr4	119526740	C	G	0.00435	LOC729218	+	FALSE
chr1	36770607	T	C	0.00171	THRAP3	+	FALSE	(T)n	SINE,Alu
chr17	65335445	T	C	0.00084	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	16932368	T	A	0.00336	NBPF1	-	FALSE	MLT1F-int	SINE,Alu
chr1	176176230	G	A	0.00168	RFWD2	-	FALSE
chr1	245006499	C	G	0.00171	COX20	+	FALSE
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	113213004	G	T	0.00206	CAPZA1	+	FALSE
chr3	195243012	A	C	0.00128	PPP1R2	-	FALSE
chr18	11852628	C	T	0.00048	GNAL,CHMP1B	+	FALSE
chr1	16892277	G	T	0.00164	NBPF1	-	FALSE
chr6	74493432	A	C	0.00611	CD109	+	FALSE
chr10	77157784	C	T	0.00027	ZNF503	-	FALSE	(T)n	SINE,Alu
chr3	44790781	T	C	0.00074	KIAA1143	-	TRUE	AluY	SINE,Alu
chr17	25640295	T	A	0.00154	WSB1	+	FALSE
chr17	73886249	T	C	0.00069	TRIM65	-	TRUE	FRAM	SINE,Alu
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr1	11083183	G	T	0.00342	TARDBP	+	FALSE
chr4	88814756	C	T	0.00145		.	FALSE
chr5	79277952	A	C	0.00041	MTX3	-	FALSE	(AC)n	SINE,Alu
chr1	28824360	A	G	0.00971	PHACTR4	+	TRUE	AluSx3	SINE,Alu
chr2	37327670	T	C	0.00021		.	FALSE
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr1	145289875	T	C	0.00160	NBPF20	+	FALSE	MIR	SINE,Alu
chr2	241825926	T	C	7.75373E-05	C2orf54	-	FALSE
chr3	10192826	A	G	0.00037	VHL	+	TRUE	AluSx1	SINE,Alu
chr3	10302056	A	G	0.00018	TATDN2	+	FALSE
chr12	133298254	A	G	0.00849	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	988503	A	T	0.00402	AGRN	+	FALSE
chr11	769459	T	C	0.00082	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	44791062	T	C	0.00014	KIAA1143	-	FALSE
chr15	41593352	A	G	0.00083		.	FALSE	AluSz6	SINE,Alu
chr2	97884961	G	A	0.00668	ANKRD36	+	FALSE
chr3	10192798	A	G	0.00722	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	45975358	A	G	0.00020	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	28825419	A	G	0.00204	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	47905553	G	A	0.00098	FOXD2	+	FALSE
chr1	204521160	A	G	0.00231	MDM4	+	TRUE	AluSp	SINE,Alu
chr5	177577353	C	A	0.00121	NHP2	-	FALSE
chr1	16946437	C	T	0.00257	CROCCP2	-	FALSE
chr1	26143725	A	T	0.00818	SEPN1	+	FALSE	AluSx	SINE,Alu
chr8	144940792	G	C	9.20360E-05	EPPK1	-	FALSE
chr5	37290336	T	C	0.00036		.	FALSE	AluSz	SINE,Alu
chr14	21928999	T	C	2.57107E-05	RAB2B	-	TRUE	AluSp	SINE,Alu
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr3	10193743	T	C	0.00456	VHL	+	FALSE	AluJr	SINE,Alu
chr2	37331025	T	C	0.00029		.	FALSE	AluSx1	SINE,Alu
chr13	114748384	C	T	0.00050	RASA3	-	FALSE
chr2	37331065	T	C	0.00527		.	FALSE	AluSx1	SINE,Alu
chr12	990912	A	C	0.00244	WNK1	+	FALSE
chr1	101444065	T	C	0.00927	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr7	102119322	T	C	0.00834	POLR2J	-	FALSE
chr11	32623987	T	A	5.29256E-06	CCDC73,EIF3M	+,-	FALSE
chr1	244572643	C	A	0.00681	ADSS	-	FALSE
chr4	36121334	C	G	0.00057	ARAP2	-	FALSE
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr2	8998555	G	A	0.00584	MBOAT2	-	FALSE
chr1	109818160	T	G	0.00745	CELSR2	+	FALSE
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chr12	49745431	A	G	0.00033	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	36068231	T	C	0.00121	PSMB2	-	TRUE	AluSc	SINE,Alu
chr15	51294995	G	A	0.00268	AP4E1	+	FALSE
chr15	65442592	T	C	8.95444E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr1	24296871	G	C	0.00733		.	FALSE	AluSg	SINE,Alu
chr11	119533724	C	G	0.00232	NECTIN1	-	FALSE
chr5	174956497	C	T	0.00487	SFXN1	+	FALSE
chr1	211921702	T	C	1.94235E-05	LPGAT1	-	FALSE
chr4	24578019	G	A	0.00000	DHX15	-	FALSE
chr1	145512024	A	G	0.00041	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr12	125511958	A	G	0.00494	THRIL	-	FALSE	AluSx1	SINE,Alu
chr4	17803616	T	C	4.59289E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	16909220	T	C	0.00029	NBPF1	-	FALSE
chr1	36032230	C	A	0.00297	NCDN	+	FALSE
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr1	11810674	G	A	0.00279	AGTRAP	+	FALSE
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr7	44842099	A	G	1.82502E-05	PPIA	+	TRUE
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	9328120	A	G	0.00128	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	36068231	T	C	0.00508	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	154320942	A	G	0.00579	ATP8B2	+	FALSE
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	62628443	A	G	0.00359	PATJ	+	TRUE	AluSg4	SINE,Alu
chr1	149581854	C	A	0.00175	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr7	65618786	A	G	3.58027E-08	CRCP	+	TRUE	AluSx3	SINE,Alu
chr1	200375404	T	G	0.00030	ZNF281	-	FALSE
chr6	42856330	A	G	2.22045E-16	RPL7L1	+	TRUE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr9	133579734	A	G	0.00129	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr1	202992954	T	C	0.00042	TMEM183A	+	FALSE
chr3	24019987	A	C	0.00563	NR1D2	+	FALSE
chr1	16534255	C	G	0.00980	ARHGEF19	-	FALSE
chrX	152916233	C	A	0.00758	DUSP9	+	FALSE
chr1	9990314	T	A	0.00017	LZIC	-	FALSE
chr1	120458004	A	T	0.00247	NOTCH2	-	FALSE
chr1	41088377	C	T	8.47840E-10	RIMS3	-	FALSE
chr1	204521159	A	G	0.00158	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr2	61315734	A	G	0.00396	KIAA1841	+	TRUE	AluSg	SINE,Alu
chr1	148343689	A	G	0.00517	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	19542250	T	C	0.00780	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr6	37142192	C	T	0.00850	PIM1	+	FALSE
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr5	154196577	C	T	0.00906	LARP1	+	FALSE
chr1	179042616	A	G	1.60543E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr2	132049915	A	G	0.00226	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr6	109785909	T	C	0.00556	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr3	141879810	T	C	0.00348	GK5	-	FALSE	AluJr	SINE,Alu
chr16	10623631	T	C	1.36144E-05	EMP2	-	TRUE	AluSp	SINE,Alu
chr17	17425631	C	T	0.00036	PEMT	-	FALSE
chr7	17384334	A	G	0.00013	AHR	+	TRUE	AluSx	SINE,Alu
chr2	227597207	T	C	0.00209	IRS1	-	FALSE	(TA)n	SINE,Alu
chr1	161088583	T	G	0.00822	NIT1	+	FALSE
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr1	11347150	C	A	0.00366	UBIAD1	+	FALSE
chr5	115165731	T	C	0.00410	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	1252652	T	C	0.00219	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr3	23959425	C	G	0.00000	RPL15	+	FALSE
chr1	168218574	A	G	0.00148		.	FALSE	AluSz	SINE,Alu
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr5	122359499	C	A	0.00304	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	52520892	A	C	0.00292	TXNDC12	-	FALSE
chr6	114181223	A	G	0.00365	MARCKS	+	FALSE
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr1	40539201	A	G	0.00028	PPT1	-	FALSE
chr3	57913810	G	A	0.00477	SLMAP	+	FALSE
chr1	6257826	T	C	0.00192	RPL22	-	FALSE
chr1	15993514	C	T	6.34808E-08		.	FALSE	AluSx4	SINE,Alu
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	145513051	A	G	0.00269	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	145689611	C	A	0.00104	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	47099235	A	C	0.00919		.	FALSE
chr3	49453834	C	T	0.00518	TCTA	+	FALSE
chr2	191745655	C	G	0.00163	GLS	+	FALSE
chr1	205719141	C	T	0.00021	NUCKS1	-	FALSE
chr1	10519936	T	C	0.00349		.	FALSE	AluJr	SINE,Alu
chr1	205056301	A	G	0.00506	RBBP5	-	FALSE
chr1	19542455	T	C	0.00506	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr12	133298254	A	G	1.64181E-10	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	27202812	T	C	0.00388		.	FALSE	AluSq2	SINE,Alu
chr1	36067760	T	C	0.00203	PSMB2	-	TRUE	AluSz	SINE,Alu
chr12	98943149	A	G	0.00019	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	85742157	G	C	0.00514	BCL10,LOC646626	+,-	FALSE
chr1	85785550	C	A	0.00156	DDAH1	-	FALSE
chr4	165996789	T	C	0.00939		.	FALSE	AluSg4	SINE,Alu
chr1	54691465	C	T	0.00064	SSBP3	-	FALSE
chr1	31192650	T	G	0.00727	MATN1,MATN1-AS1	+,-	FALSE
chr1	179042482	A	G	1.77761E-07	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr7	17384395	A	G	1.20082E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr1	235383188	A	G	0.00531	ARID4B	-	FALSE
chr3	58141791	A	G	0.00696	FLNB	+	FALSE
chr1	110173775	G	T	0.00015	AMPD2	+	FALSE
chr1	19234134	A	G	0.00027	IFFO2	-	FALSE
chr10	75534488	C	T	0.00025	FUT11	+	FALSE
chr1	100657416	C	T	0.00058	DBT	-	FALSE	AluJb	SINE,Alu
chr5	55235866	T	A	0.00073	IL6ST	-	FALSE
chr15	85184830	T	C	0.00895	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr2	46612338	T	G	0.00018	EPAS1	+	FALSE
chr2	101635538	C	T	0.00069	TBC1D8,RPL31	+,-	FALSE	Charlie17	SINE,Alu
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr1	44088547	C	A	0.00018	PTPRF	+	FALSE	A-rich	SINE,Alu
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	93826819	A	T	0.00086	DR1	+	FALSE	(GTTTT)n	SINE,Alu
chr1	20976163	C	T	0.00174	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	193058937	C	T	0.00195	TROVE2	+	FALSE	AluSc	SINE,Alu
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr1	16929279	G	A	0.00138	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	32827843	G	C	0.00275	FAM229A	-	FALSE
chr1	160967816	T	C	0.00162	F11R	-	TRUE	AluSp	SINE,Alu
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	109351501	A	G	0.00921	STXBP3	+	FALSE
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr1	46164493	T	C	0.00325	IPP	-	TRUE	AluJb	SINE,Alu
chr6	36894339	G	A	0.00650	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	1647814	T	C	0.00123	CDK11B,CDK11A	-	FALSE
chr1	43309548	G	A	0.00764	ERMAP	+	FALSE
chr10	75008815	T	C	5.77576E-09	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	59120961	G	A	0.00383	MYSM1	-	FALSE
chr4	177252238	A	G	0.00061	SPCS3	+	TRUE
chr2	38522138	G	T	8.89010E-06	ATL2	-	FALSE
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	28826150	A	G	0.00152	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr1	93617404	T	G	0.00265	TMED5	-	FALSE
chr1	65299551	G	T	0.00292	JAK1	-	FALSE
chr1	120165040	T	C	0.00107	ZNF697	-	FALSE
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr6	158613395	C	A	0.00031	GTF2H5	+	FALSE
chr5	53841241	T	A	0.00372	SNX18	+	FALSE
chr3	73112378	A	G	0.00261	PPP4R2,EBLN2	+	FALSE
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr15	90820082	A	G	0.00297		.	FALSE	AluY	SINE,Alu
chr1	145368837	C	A	4.93702E-07	NBPF20,NBPF10	+	FALSE
chr1	100489452	A	G	0.00741	SLC35A3	+	TRUE	AluSc	SINE,Alu
chr6	42854580	A	G	0.00330	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr7	29960804	C	T	6.73191E-06	SCRN1	-	FALSE
chr3	58304244	G	A	0.00560	RPP14	+	FALSE	AluSz	SINE,Alu
chr2	38971641	T	A	0.00071	SRSF7	-	FALSE
chr1	19586501	A	G	5.42567E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr19	53914448	A	G	0.00583	ZNF765	+	TRUE	AluSx	SINE,Alu

RBP	PCBP2
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR028ITN
Platform	HiSeq
Pubmed ID	32252787

PCBP2 - Target Gene Network