RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	158631171	A	C	0.00815	SPTA1	-	FALSE
chr1	1595586	T	C	0.00108	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	204524546	A	G	0.00054	MDM4	+	TRUE	AluY	SINE,Alu
chr3	57611237	A	G	9.49839E-05	DENND6A,PDE12	+,-	FALSE
chr1	45452227	G	C	0.00046	EIF2B3	-	FALSE
chr2	112227513	T	C	0.00018	MIR4435-2HG	-	FALSE
chr4	84525985	T	G	0.00041	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr14	63841404	T	A	0.00470	PPP2R5E	-	FALSE	(T)n	SINE,Alu
chr8	146200283	T	C	0.00082	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	112266787	G	T	0.00642	FAM212B	-	FALSE
chr3	37407769	A	T	0.00406	GOLGA4	+	FALSE
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr7	44918672	T	C	0.00150	PURB	-	TRUE	AluSg	SINE,Alu
chr1	47184569	G	C	0.00061	EFCAB14	-	FALSE
chr17	61909370	G	A	0.00152	PSMC5	+	FALSE
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr5	179157298	T	G	0.00816	CANX	+	FALSE
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr2	172412829	T	A	0.00477	CYBRD1	+	FALSE
chr1	24798089	G	A	0.00815	NIPAL3	+	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	179969921	A	T	0.00203	SESTD1	-	FALSE
chr2	241825926	T	C	7.75373E-05	C2orf54	-	FALSE
chr22	31375015	A	T	0.00990	TUG1	+	FALSE
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr1	150548881	G	A	9.52924E-05	MCL1	-	FALSE
chr5	118811533	G	A	0.00781	HSD17B4	+	FALSE
chr4	17802956	T	C	0.00249	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	10517567	T	C	0.00262		.	FALSE	AluSx1	SINE,Alu
chr7	44918804	T	C	0.00015	PURB	-	TRUE	AluSg	SINE,Alu
chr1	145688983	A	G	0.00101	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	33148216	A	G	0.00321	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr1	11298093	C	T	7.93954E-12	MTOR	-	FALSE
chr1	113672691	A	G	0.00515		.	FALSE	AluJb	SINE,Alu
chr3	176742501	G	A	0.00707	TBL1XR1	-	FALSE	(A)n	SINE,Alu
chr6	159395409	T	C	0.00136		.	FALSE
chr2	37429738	A	G	0.00203	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr12	56215102	T	A	0.00405	DNAJC14	-	FALSE
chr20	43996145	T	A	0.00611	SYS1-DBNDD2,SYS1	+	FALSE
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr1	6259658	G	C	0.00012	RPL22	-	FALSE
chr11	126147713	C	G	0.00384	FOXRED1	+	FALSE
chr6	42855957	A	G	0.00107	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	154454628	T	C	0.00099	SHE	-	TRUE	AluSq2	SINE,Alu
chr5	37290323	T	C	0.00029		.	FALSE	AluSz	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	89649369	T	C	0.00333	GBP4	-	TRUE	AluJb	SINE,Alu
chr1	27205214	T	C	0.00048		.	FALSE	AluSc	SINE,Alu
chr3	160154971	T	C	0.00820	TRIM59	-	FALSE	AluJb	SINE,Alu
chr14	50713578	T	C	0.00260	L2HGDH	-	TRUE	AluSx	SINE,Alu
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr1	145512024	A	G	0.00392	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr5	150647744	A	G	0.00036	GM2A	+	TRUE	AluSc	SINE,Alu
chr2	37331855	C	T	0.00965		.	FALSE	L1MC4	SINE,Alu
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr1	185069687	C	T	0.00072	RNF2	+	FALSE
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr8	95804469	A	G	0.00133	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr1	114227223	G	A	0.00699	MAGI3	+	FALSE
chr1	100658578	G	A	0.00382	DBT	-	FALSE
chr1	6683581	A	C	0.00504	PHF13	+	FALSE
chr1	211918115	C	T	7.42155E-06	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr1	41088377	C	T	2.57179E-08	RIMS3	-	FALSE
chr12	123253711	A	G	0.00066	DENR	+	TRUE	(AT)n	SINE,Alu
chr1	47716039	A	G	0.00863	STIL	-	FALSE
chr2	229890660	A	G	0.00596	PID1	-	FALSE
chr1	28662199	A	G	0.00138	MED18	+	TRUE	AluSq2	SINE,Alu
chr8	128944719	A	T	0.00093	PVT1	+	FALSE
chr1	10518921	C	T	0.00398		.	FALSE	AluSx3	SINE,Alu
chr16	58554149	A	G	0.00302	CNOT1,SETD6	+,-	FALSE
chr1	9161231	T	C	0.00481		.	FALSE	AluSx	SINE,Alu
chr2	37331275	T	C	0.00884		.	FALSE	AluSx1	SINE,Alu
chr1	36068325	T	C	0.00746	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	19543353	T	C	0.00077	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	16918502	A	G	0.00437	NBPF1	-	FALSE
chr1	54571374	A	G	0.00280	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	21793644	G	A	0.00698	NBPF3	+	FALSE
chr14	24661017	G	T	0.00771	TM9SF1	-	FALSE
chr16	10625108	T	C	7.88488E-10	EMP2	-	TRUE	AluSx3	SINE,Alu
chr5	118174735	T	C	0.00139	DTWD2	-	TRUE	AluY	SINE,Alu
chr2	37329307	T	C	0.00102		.	FALSE	AluJr4	SINE,Alu
chr6	38140505	A	G	0.00109	BTBD9	-	FALSE
chr1	33148635	A	G	5.17667E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	135208354	A	T	0.00249	MGAT5	+	FALSE
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr1	47767914	G	A	0.00636	STIL	-	FALSE
chr1	16912138	A	G	0.00197	NBPF1	-	FALSE
chr1	19585545	G	A	0.00696	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr4	763539	G	C	0.00816	PCGF3	+	FALSE
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr1	21793735	C	G	0.00099	NBPF3	+	FALSE
chr1	16932429	C	G	0.00106	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	12040479	T	C	0.00505	MFN2	+	FALSE
chr1	245017464	T	A	0.00314	HNRNPU,SNORA100	-	FALSE
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr3	99516879	A	T	0.00667	MIR548G	-	FALSE
chr1	229738170	T	G	0.00168	TAF5L	-	FALSE
chr1	9161357	T	C	0.00739		.	FALSE	AluSx	SINE,Alu
chr1	28826085	A	G	0.00281	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr8	23049112	T	C	0.00774	TNFRSF10A	-	TRUE
chr1	4834606	T	C	0.00647	AJAP1	+	FALSE
chr11	94801633	A	T	0.00808	SRSF8	+	FALSE
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr1	226333556	C	A	0.00977	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr3	108298260	C	T	0.00042	KIAA1524	-	FALSE
chr3	48787011	T	C	0.00040	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	13942885	C	A	0.00038	PDPN	+	FALSE
chr1	47716046	A	T	0.00696	STIL	-	FALSE
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr19	42375624	A	G	0.00339		.	FALSE	AluSx	SINE,Alu
chr1	110566328	A	T	0.00515	AHCYL1	+	FALSE
chr11	76835290	C	T	0.00011	CAPN5	+	FALSE
chr5	95130804	C	T	0.00792	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr11	65544342	T	C	3.74920E-05	AP5B1	-	TRUE	AluJb	SINE,Alu
chr1	237064432	C	G	0.00019	MTR	+	FALSE
chr9	128001436	C	T	0.00052	HSPA5	-	FALSE
chr1	24798520	A	C	0.00110	NIPAL3	+	FALSE
chr7	94297301	G	T	0.00145	PEG10	+	FALSE
chr2	55516908	A	G	0.00016	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr1	22418122	T	C	0.00790	CDC42	+	FALSE
chr4	13606576	A	T	0.00737	BOD1L1	-	FALSE
chr14	75202544	A	G	3.08187E-07	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	10520154	T	C	0.00018		.	FALSE	AluSx	SINE,Alu
chr1	24296856	T	G	0.00564		.	FALSE	AluSg	SINE,Alu
chr1	179326847	A	G	0.00031	SOAT1	+	TRUE	AluJo	SINE,Alu
chr17	65335394	T	C	5.10125E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr1	57002773	A	G	0.00162	PLPP3	-	FALSE
chr1	24864008	A	G	0.00601		.	FALSE
chr3	172115474	A	G	0.00012	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr8	56985607	C	T	0.00085	RPS20	-	FALSE
chr1	32669918	G	A	0.00639	CCDC28B	+	FALSE
chr1	43996594	T	C	0.00836	PTPRF	+	FALSE	(CGGCTC)n	SINE,Alu
chr1	2303108	T	C	5.78895E-05	MORN1	-	FALSE	AluSp	SINE,Alu
chr4	57326262	A	G	2.33397E-05	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	28835847	A	G	4.14471E-06	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	52306075	T	C	8.71211E-05	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr6	150047430	T	C	0.00107	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	62516683	G	C	0.00966	PATJ	+	FALSE
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr9	130268407	C	G	0.00902	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr1	204526713	A	G	0.00078	MDM4	+	TRUE	AluSx	SINE,Alu
chr17	74555106	T	C	0.00164	SNHG16	+	FALSE
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr17	65335430	T	C	0.00019	PSMD12	-	TRUE	AluSx	SINE,Alu
chr8	25272423	G	T	0.00659	DOCK5	+	FALSE
chr3	44791569	T	C	0.00685	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr9	119162301	A	T	0.00778	PAPPA,PAPPA-AS1	+,-	FALSE	(GAAA)n	SINE,Alu
chr1	145291217	C	T	0.00075	NBPF20	+	FALSE
chr1	22419433	T	G	0.00156	CDC42	+	FALSE
chr2	105962339	G	A	0.00079	C2orf49	+	FALSE	AluSp	SINE,Alu
chr1	44035352	C	T	0.00170	PTPRF	+	FALSE
chr1	113212976	C	T	0.00904	CAPZA1	+	FALSE
chrX	77083955	T	C	0.00065	MAGT1	-	TRUE	AluSz	SINE,Alu
chr5	180669695	T	C	0.00101	RACK1	-	TRUE	AluSx1	SINE,Alu
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr4	77997064	A	G	0.00283	CCNI	-	FALSE	(A)n	SINE,Alu
chr10	70502288	G	A	0.00347	CCAR1	+	FALSE
chr2	191556844	T	C	0.00024	NAB1	+	FALSE
chr7	129472333	C	T	0.00670	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr1	79356400	C	T	0.00714	ADGRL4	-	FALSE
chr1	200375847	T	G	0.00027	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	160231910	A	T	0.00051	DCAF8	-	FALSE
chr1	78029102	G	A	0.00086	ZZZ3	-	FALSE
chr1	204521512	A	G	7.69882E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	10520331	C	T	0.00280		.	FALSE	AluSx1	SINE,Alu
chr8	95804615	A	G	0.00968	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr4	154257510	A	C	0.00121	TRIM2	+	FALSE	(A)n	SINE,Alu
chr2	176043084	A	G	0.00801	ATP5G3	-	FALSE
chr1	115249239	G	A	1.76451E-06	NRAS	-	FALSE
chr1	15904318	C	T	0.00109	AGMAT	-	FALSE
chr1	86047210	C	T	0.00201	CYR61	+	FALSE
chr1	47685593	A	C	0.00891	TAL1	-	FALSE	(CCACCC)n	SINE,Alu
chr2	178086786	A	G	0.00305	HNRNPA3	+	FALSE
chr2	217366971	A	G	0.00616		.	FALSE	AluSz6	SINE,Alu
chr2	132481526	C	A	0.00040	C2orf27A	+	FALSE
chr1	145689568	A	G	0.00131	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	45960851	C	T	0.00299	FYCO1	-	FALSE
chr6	44417159	A	G	0.00959	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr4	83406544	C	T	0.00328	TMEM150C	-	FALSE
chr10	75009651	T	C	0.00558	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	1169728	G	T	0.00745	B3GALT6	+	FALSE
chr1	85484276	C	T	0.00168	MCOLN3	-	FALSE
chr17	79004271	T	C	0.00200	BAIAP2-AS1	-	FALSE	AluSq2	SINE,Alu
chr15	65442506	T	C	0.00088	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	6282401	T	C	0.00469	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	2940026	T	C	0.00046	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	204524914	A	G	0.00766	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	156005447	C	A	0.00337	UBQLN4	-	FALSE
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr17	42225547	A	C	0.00240	C17orf53	+	FALSE
chr6	24719404	C	A	0.00024		.	FALSE
chr15	72635829	A	C	0.00054	HEXA	-	FALSE
chr1	20980225	G	T	0.00055	DDOST	-	FALSE
chr1	20945264	A	C	0.00605	CDA	+	FALSE
chr2	54858511	C	T	0.00124	SPTBN1	+	FALSE
chr5	93018883	A	T	0.00393	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr1	46764013	G	A	0.00224	LRRC41	-	FALSE
chrX	152916233	C	A	0.00758	DUSP9	+	FALSE
chr1	28826130	A	G	1.79185E-05	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr7	44047240	G	A	0.00588	POLR2J4,SPDYE1	+,-	FALSE
chr19	58356376	A	G	0.00061	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr1	116237496	T	A	0.00934	VANGL1	+	FALSE
chr7	102004748	T	C	0.00050	LOC100289561,LOC100630923	+	FALSE
chr1	45671430	A	T	0.00041	ZSWIM5	-	FALSE
chr3	12942852	C	A	0.00458	IQSEC1	-	FALSE
chr1	1288481	C	A	0.00013	MXRA8	-	FALSE
chr1	231398555	A	G	0.00401	GNPAT	+	FALSE
chr1	3371371	C	G	0.00844	ARHGEF16	+	FALSE
chr1	43629982	C	T	0.00733	EBNA1BP2	-	FALSE
chr14	70838368	T	C	0.00561	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr6	52860746	T	G	0.00011		.	FALSE	7SK	SINE,Alu
chr15	83826216	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr1	9160982	T	C	0.00695		.	FALSE	AluJb	SINE,Alu
chr1	148558170	T	C	0.00235		.	FALSE	AluJb	SINE,Alu
chr1	78414329	G	A	0.00785	FUBP1	-	FALSE	A-rich	SINE,Alu
chr5	71654855	G	C	0.00414	PTCD2	+	FALSE
chr14	76045220	T	C	0.00421	LOC102724153,FLVCR2	+,-	FALSE
chr1	54493197	T	C	0.00148	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr7	127941334	C	T	0.00440	MGC27345	-	FALSE	MIR3	SINE,Alu

RBP	STAU1
Knock-Method	shRNA
RBP Family	dsrm
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR124KCF
Platform	HiSeq
Pubmed ID	32252787

STAU1 - Target Gene Network