RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	76372541	G	C	0.00498	ZBED3	-	FALSE
chr3	52084404	A	T	0.00032	DUSP7	-	FALSE	(A)n	SINE,Alu
chr3	183209052	T	C	0.00041	KLHL6	-	TRUE	AluSq	SINE,Alu
chr1	148561089	T	C	0.00975	NBPF15	+	FALSE
chr1	145512073	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr1	53679610	G	A	0.00084	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	25570549	C	A	0.00387	RSRP1	-	FALSE
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr1	26138325	G	A	0.00245	SEPN1	+	FALSE
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr1	100361925	G	A	0.00181	AGL	+	FALSE
chr1	10518052	T	C	7.90759E-05		.	FALSE	AluJr	SINE,Alu
chr12	10311392	T	C	0.00177	OLR1	-	FALSE
chr2	37429627	A	G	7.56792E-05	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chrM	10307	A	C	0.00046		.	FALSE
chr10	79570873	G	T	0.00292	DLG5	-	FALSE
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr1	204526727	A	G	0.00033	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	246829742	T	C	0.00960	CNST	+	FALSE	(TGTG)n	SINE,Alu
chr3	50686350	T	G	2.12445E-05	MAPKAPK3	+	FALSE
chr1	153720690	G	A	0.00550	INTS3	+	FALSE
chr1	144606838	A	G	0.00988	NBPF20	+	FALSE
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr14	53242425	T	C	0.00473	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr17	73774199	C	T	0.00056	H3F3B	-	FALSE
chr3	39438321	A	T	6.25124E-06	SLC25A38	+	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	28636644	A	G	0.00918	FOSL2	+	FALSE
chr1	1684347	C	T	0.00550	NADK	-	FALSE
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	65299551	G	T	0.00292	JAK1	-	FALSE
chr1	19981865	A	G	0.00213	MINOS1-NBL1,NBL1	+	FALSE
chr2	131906031	C	T	0.00439	PLEKHB2	+	FALSE
chr1	10518733	T	C	0.00050		.	FALSE	AluSx1	SINE,Alu
chr4	103183510	C	T	0.00718	SLC39A8	-	FALSE
chr2	47129284	A	G	0.00327	MCFD2	-	FALSE
chr3	10192596	A	G	9.40892E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	32557486	A	G	0.00525	TMEM39B	+	FALSE
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr12	52710715	G	A	0.00729	KRT83	-	FALSE
chr3	195694465	T	C	0.00300	SDHAP1	-	FALSE
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chrX	54587218	A	G	0.00014	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	9162932	A	T	0.00635		.	FALSE
chr7	20178460	T	C	6.50978E-05	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chrX	123046306	A	G	0.00016	XIAP	+	TRUE	AluJb	SINE,Alu
chr1	53289852	A	G	0.00228	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	17733268	T	C	0.00472	RCC2	-	FALSE
chr1	222906426	T	C	0.00322	BROX	+	FALSE	AluSx	SINE,Alu
chr1	146650289	C	T	0.00024	PDIA3P1	+	FALSE
chr6	34254565	A	T	0.00617		.	FALSE	(A)n	SINE,Alu
chr3	125248854	A	C	0.00014	OSBPL11	-	FALSE
chr22	39259540	G	A	0.00493	CBX6	-	FALSE
chr1	46774813	C	G	0.00766	UQCRH	+	FALSE
chr2	37328042	T	C	6.80414E-06		.	FALSE
chr19	39926509	A	C	0.00986	RPS16	-	FALSE
chr1	144618201	T	C	2.48995E-05	NBPF20,NBPF9	+	FALSE
chr19	4654601	A	G	0.00016	TNFAIP8L1	+	TRUE	AluJb	SINE,Alu
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	145500925	T	A	0.00997	NBPF20,NBPF10,LIX1L	+	FALSE
chr1	44072018	C	T	0.00783	PTPRF	+	FALSE
chr1	205581853	C	T	0.00171	ELK4	-	FALSE
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr4	2070260	G	A	0.00724	NAT8L	+	FALSE	(TG)n	SINE,Alu
chr1	152552285	C	A	0.00400	LCE3D	-	FALSE
chr1	93803522	T	C	0.00163	CCDC18-AS1	-	TRUE	AluJr	SINE,Alu
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr2	203744550	T	C	0.00037		.	FALSE	AluSx1	SINE,Alu
chr12	1611791	C	G	0.00971	LINC00942	+	FALSE
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr2	99812464	A	G	0.00998	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	105881071	C	A	0.00851	TGFBRAP1	-	FALSE
chr1	249139806	G	A	0.00983	ZNF672	+	FALSE
chr3	53263333	G	A	0.00329	TKT	-	FALSE
chr2	37327702	T	C	0.00119		.	FALSE
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr6	31324202	T	A	0.00300		.	FALSE
chr1	17326540	G	A	0.00120	ATP13A2	-	FALSE
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr1	16927379	T	A	0.00864	NBPF1	-	FALSE
chr10	81114959	C	T	0.00048	PPIF	+	FALSE	MSTA	SINE,Alu
chr4	57326879	A	G	0.00198	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	121133392	T	C	0.00651	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	85785107	T	C	4.02203E-05	DDAH1	-	FALSE
chr5	40832550	C	T	7.98859E-06	RPL37	-	FALSE
chr1	31905886	C	A	0.00702	SERINC2	+	FALSE
chr5	134260212	C	T	0.00264	PCBD2	+	FALSE
chr1	120611964	G	C	0.00130	NOTCH2	-	FALSE
chr11	74551853	A	C	0.00079	RNF169	+	FALSE
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr14	52906081	T	G	0.00602	TXNDC16	-	FALSE
chr1	1668089	G	T	0.00801	SLC35E2	-	FALSE	AluSz	SINE,Alu
chr1	119693495	A	G	0.00996	LOC101929147	+	TRUE	AluSx	SINE,Alu
chr5	151041886	T	G	0.00269	SPARC	-	FALSE
chr12	133298917	A	G	0.00612	PGAM5	+	TRUE	AluSg	SINE,Alu
chr17	41144581	A	C	0.00806	RUNDC1	+	FALSE	AluSx	SINE,Alu
chr2	174090336	A	C	0.00331	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr3	197612370	A	G	0.00157		.	FALSE	AluSp	SINE,Alu
chr1	161931167	A	G	0.00251	ATF6	+	FALSE
chr4	170037423	G	T	0.00802	SH3RF1	-	FALSE
chr1	145369556	A	G	0.00086	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	11722688	G	A	0.00076	FBXO44	+	FALSE
chr1	10459165	G	A	2.83145E-06	PGD	+	FALSE
chr12	98942679	A	G	2.08991E-07	TMPO	+	FALSE	AluSc	SINE,Alu
chr1	10517653	T	C	1.73226E-05		.	FALSE	AluSx1	SINE,Alu
chr2	32535568	A	G	0.00192		.	FALSE	MER8	SINE,Alu
chr1	19585553	A	G	0.00039	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr19	45406536	G	T	0.00518	TOMM40	+	FALSE
chr2	27170943	A	C	0.00684	DPYSL5	+	FALSE	(CA)n	SINE,Alu
chr1	6684050	G	A	2.21294E-05	PHF13	+	FALSE
chr1	204526554	A	G	0.00194	MDM4	+	TRUE	AluSx	SINE,Alu
chr6	151678865	T	G	0.00016	AKAP12	+	FALSE	(T)n	SINE,Alu
chr12	125511311	A	G	0.00299	THRIL	-	FALSE	AluSx1	SINE,Alu
chr3	113528892	A	T	8.78648E-05	ATP6V1A	+	FALSE	AluSp	SINE,Alu
chr7	44918804	T	C	0.00015	PURB	-	TRUE	AluSg	SINE,Alu
chr3	158547143	G	A	0.00178	MFSD1	+	FALSE
chr5	150578574	A	G	0.00447	CCDC69	-	FALSE
chr1	28564252	A	G	0.00118	ATPIF1	+	FALSE
chr1	32793185	C	T	0.00015	HDAC1	+	FALSE
chr1	19953120	G	A	0.00025	MINOS1,MINOS1-NBL1	+	FALSE
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr1	1570921	C	T	0.00411	CDK11B	-	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	6583592	T	C	0.00939	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	212587320	T	C	0.00023	TMEM206	-	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr11	62407518	T	C	3.11115E-06	GANAB	-	TRUE	AluY	SINE,Alu
chr7	158525786	G	A	0.00453	ESYT2	-	FALSE
chr1	121134204	G	T	0.00557	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	(TTTCCT)n	SINE,Alu
chr2	232196570	A	G	0.00765	ARMC9	+	FALSE
chr14	53242354	T	C	3.85910E-06	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr12	123346990	G	T	0.00055	HIP1R	+	FALSE
chr1	168215575	G	A	0.00688	ANKRD36BP1	-	FALSE
chr5	177576461	A	T	0.00659		.	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr1	1650797	A	G	0.00276	CDK11B,CDK11A	-	FALSE
chr7	128293103	A	C	0.00313	LINC01000	+	FALSE
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr1	1650807	T	C	0.00104	CDK11B,CDK11A	-	FALSE
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr2	231032372	A	G	0.00691		.	FALSE	MLT1H	SINE,Alu
chr19	50412217	C	G	0.00017	IL4I1,NUP62	-	FALSE	(GGT)n	SINE,Alu
chr1	28261662	A	G	0.00872	SMPDL3B	+	FALSE
chr12	121772025	T	C	0.00562	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr7	6064011	T	A	0.00246	EIF2AK1	-	FALSE
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr12	98943011	A	G	1.18352E-07	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	28607959	C	A	0.00230	SESN2	+	FALSE
chr1	116239368	G	A	5.97604E-05	VANGL1	+	FALSE
chr15	90815787	A	G	0.00055		.	FALSE	FRAM	SINE,Alu
chr1	36067749	T	C	0.00748	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	145512024	A	G	0.00836	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr2	100019496	A	G	0.00789	REV1	-	FALSE
chr1	37949224	C	T	7.78396E-10	ZC3H12A	+	FALSE
chr1	144594373	C	G	0.00715	NBPF20	+	FALSE
chr14	19686228	C	T	0.00106	DUXAP10	+	FALSE
chr1	115299504	G	T	0.00067	CSDE1	-	FALSE
chr1	36770605	C	T	0.00041	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	17345246	A	T	0.00812	SDHB	-	FALSE
chr22	18571431	A	G	0.00158	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	43916642	T	C	0.00748	SZT2	+	FALSE	MIR3	SINE,Alu
chr12	53807911	A	T	0.00355	SP1	+	FALSE
chr3	195460892	A	G	0.00057		.	FALSE	AluSg	SINE,Alu
chr2	86364710	T	C	0.00273	PTCD3	+	FALSE
chr8	12880299	A	G	1.70760E-05	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr6	3154871	A	C	7.50591E-06	TUBB2A	-	FALSE
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	104097685	C	T	0.00028	RNPC3,AMY2B	+	FALSE
chr12	106460001	G	A	2.23324E-05	NUAK1	-	FALSE
chr1	10518591	A	T	0.00545		.	FALSE
chr2	187544218	T	G	0.00796	ITGAV	+	FALSE
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr8	143744407	T	C	0.00697	JRK	-	TRUE	AluJr	SINE,Alu
chr1	1647902	A	T	0.00191	CDK11B,CDK11A	-	FALSE
chr1	89570148	A	G	0.00084		.	FALSE
chr1	16918734	G	C	0.00600	NBPF1	-	FALSE
chr15	82336939	G	A	2.47536E-05	MEX3B	-	FALSE
chr1	145512944	A	G	0.00171	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	16889575	T	C	0.00969	NBPF1	-	TRUE
chr7	148700783	G	A	0.00557	PDIA4	-	FALSE
chr1	155838369	G	C	0.00346	SYT11	+	FALSE
chr1	24798089	G	A	0.00815	NIPAL3	+	FALSE
chr1	67451522	A	T	0.00883	MIER1	+	FALSE
chr1	53289852	A	G	0.00894	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr15	65442592	T	C	8.95444E-05	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	117532372	G	T	0.00678	PTGFRN	+	FALSE
chr2	27838058	C	A	0.00063	ZNF512	+	FALSE
chr2	206987109	T	C	0.00280		.	FALSE	AluSx	SINE,Alu
chr1	26608021	T	A	0.00069		.	FALSE
chr10	114209888	A	G	0.00386	VTI1A	+	TRUE	AluSx3	SINE,Alu
chr17	67538540	T	C	0.00295		.	FALSE
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr1	244571947	C	T	0.00775	ADSS	-	FALSE
chr2	30748507	C	T	0.00103	LCLAT1	+	FALSE

RBP	ASCC1
Knock-Method	shRNA
RBP Family	AKAP7_NLS
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR193FFA
Platform	HiSeq
Pubmed ID	32252787

ASCC1 - Target Gene Network