RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	125961468	A	G	2.27854E-07	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	9428685	T	G	0.00416	SPSB1	+	FALSE
chr1	61922059	C	A	0.00132	NFIA	+	FALSE	(A)n	SINE,Alu
chr1	179012947	C	G	0.00501	FAM20B	+	FALSE
chr1	138980	G	T	0.00608	LOC729737	-	FALSE
chr1	19586501	A	G	0.00019	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	94032944	C	T	0.00147	BCAR3	-	FALSE
chr1	16945227	G	T	0.00139	CROCCP2	-	FALSE
chr8	30536450	T	C	8.74573E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr1	204096630	T	C	0.00471	SOX13	+	FALSE
chr1	570178	G	A	0.00787		.	FALSE
chr1	109746825	A	G	0.00427	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr2	37330172	T	G	0.00972		.	FALSE
chr4	76568676	T	A	0.00051	G3BP2	-	FALSE
chr12	98942643	A	G	3.59360E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	33149333	A	G	0.00980	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	52882970	A	G	0.00533	PRPF38A	+	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr2	198416724	A	T	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	175128444	C	A	0.00036	KIAA0040	-	FALSE
chr11	9466935	T	G	0.00439	IPO7	+	FALSE
chrX	77083846	T	C	0.00668	MAGT1	-	TRUE	AluSz	SINE,Alu
chr5	77655342	T	C	0.00919	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	28825331	A	G	0.00024	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	158067060	T	A	0.00778	KIRREL	+	FALSE
chr6	33269307	T	C	0.00645		.	FALSE	AluSx	SINE,Alu
chr6	42857058	A	G	3.29248E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	235272660	C	T	0.00111	TOMM20	-	FALSE	Tigger10	SINE,Alu
chr1	10520153	T	C	0.00907		.	FALSE	AluSx	SINE,Alu
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chrX	123046598	A	G	0.00371	XIAP	+	TRUE	AluSz	SINE,Alu
chr4	7060959	T	C	0.00832	GRPEL1	-	FALSE
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr1	109242607	G	A	0.00652	PRPF38B	+	FALSE
chr3	183900836	G	A	2.54977E-05	AP2M1	+	FALSE
chr1	179326296	A	G	0.00171	SOAT1	+	TRUE
chr4	7762356	G	A	3.36293E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	68940566	A	C	0.00126	DEPDC1	-	FALSE
chr1	28825418	A	G	0.00961	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	33481400	G	C	1.12603E-05	UBP1	-	FALSE
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr17	57281060	A	G	0.00026	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	92862904	A	G	0.00279		.	FALSE	AluJr	SINE,Alu
chr6	31323203	A	G	2.54151E-09		.	FALSE
chr1	203767822	T	G	0.00064	ZC3H11A,ZBED6	+	FALSE
chr5	132440285	C	G	0.00322	HSPA4	+	FALSE
chr3	9519219	C	T	0.00146	SETD5	+	FALSE
chr10	75009781	T	C	9.15447E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr19	2917287	C	A	0.00243	ZNF57	+	FALSE
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr2	38961523	C	A	0.00790	GALM	+	FALSE	AluSc8	SINE,Alu
chr7	193091	C	T	1.15297E-06	FAM20C	+	FALSE
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr2	30864980	A	G	7.96700E-05	LCLAT1	+	FALSE
chr4	73923056	T	C	0.00077	COX18	-	TRUE	AluSz	SINE,Alu
chr19	200571	T	C	0.00079	LINC01002	-	FALSE
chr1	27202963	C	T	0.00106		.	FALSE	AluSq2	SINE,Alu
chr2	37329307	T	C	0.00102		.	FALSE	AluJr4	SINE,Alu
chr1	9161011	T	C	7.97270E-05		.	FALSE	AluJb	SINE,Alu
chr7	6501829	T	A	0.00124	KDELR2	-	FALSE
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr1	33071096	A	G	0.00238	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr2	220308581	A	C	0.00029	SPEG	+	FALSE
chr1	40537944	C	A	0.00506	CAP1	+	FALSE
chr1	200522058	T	A	0.00209	KIF14	-	FALSE	AluSg	SINE,Alu
chr1	148561089	T	C	0.00011	NBPF15	+	FALSE
chr2	64860431	T	G	0.00213	SERTAD2	-	FALSE
chr5	125961623	A	G	6.78430E-09	PHAX	+	TRUE	AluSz6	SINE,Alu
chr7	29962666	T	A	0.00077	SCRN1	-	FALSE
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr5	174956218	A	G	0.00953	SFXN1	+	TRUE	AluSp	SINE,Alu
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr1	789232	C	T	0.00335	LINC01128	+	FALSE
chr2	70131964	A	C	0.00351	SNRNP27	+	FALSE	L1ME4a	SINE,Alu
chr1	6282315	T	C	5.02629E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	10518733	T	C	0.00399		.	FALSE	AluSx1	SINE,Alu
chr9	14764	C	T	0.00491	WASH1	-	FALSE
chr2	174828621	A	C	0.00315	SP3	-	FALSE
chr1	76229185	T	A	0.00280	ACADM	+	FALSE
chr3	183209065	T	C	0.00576	KLHL6	-	TRUE	AluSq	SINE,Alu
chr1	146628742	T	G	0.00102	PRKAB2	-	FALSE
chr3	33138549	G	A	0.00612	GLB1	-	FALSE
chr1	78414329	G	A	0.00922	FUBP1	-	FALSE	A-rich	SINE,Alu
chr3	57548976	A	G	0.00132	PDE12	+	TRUE	FRAM	SINE,Alu
chr1	93308166	C	T	0.00334	FAM69A	-	FALSE
chr1	110049203	G	C	0.00530		.	FALSE
chr1	16344402	G	A	0.00168	HSPB7	-	FALSE	L3	SINE,Alu
chr22	33257176	A	G	0.00930	SYN3,TIMP3	+,-	FALSE
chr4	1228741	G	A	0.00095	CTBP1	-	FALSE
chr1	204524914	A	G	0.00766	MDM4	+	TRUE	AluSx	SINE,Alu
chr3	192515557	G	A	0.00130	MB21D2	-	FALSE
chr1	1447756	G	C	0.00343	ATAD3A	+	FALSE
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr1	114443582	A	G	0.00137	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	41088377	C	T	8.47840E-10	RIMS3	-	FALSE
chr10	126677250	G	T	0.00762	CTBP2	-	FALSE
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	149576483	G	A	0.00323	LINC00623,LINC00869,LOC103091866	+	FALSE
chr21	47676711	G	A	0.00316	MCM3AP	-	FALSE
chrX	3523048	A	T	0.00055	PRKX	-	FALSE
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr10	13234356	A	T	3.19668E-07	MCM10	+	FALSE
chr1	116234313	A	G	0.00262	VANGL1	+	FALSE
chr3	176739158	C	A	0.00612	TBL1XR1	-	FALSE
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr1	33148118	A	G	0.00374	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr1	143467373	T	C	0.00182		.	FALSE
chr15	49419124	T	C	1.84263E-05	COPS2	-	TRUE	MARNA	SINE,Alu
chr2	176791181	T	C	0.00063	LNPK	-	TRUE	MSTD	SINE,Alu
chr3	179117270	T	C	0.00478	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	207943385	A	G	0.00751	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr1	6282255	T	C	0.00954	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	155660742	A	G	0.00504		.	FALSE	AluSz	SINE,Alu
chr1	15844615	A	G	0.00792	CASP9	-	FALSE
chr1	10518734	T	C	0.00143		.	FALSE	AluSx1	SINE,Alu
chr13	46530764	T	G	0.00385		.	FALSE
chr2	128620436	C	T	0.00342	AMMECR1L	-	FALSE
chr2	37327702	T	C	2.28397E-07		.	FALSE
chr2	56150885	G	A	0.00624	EFEMP1	-	FALSE
chr3	4403537	C	T	0.00055	SUMF1	-	FALSE	MIR3	SINE,Alu
chr5	179665201	C	T	0.00037	MAPK9	-	FALSE	AluSx4	SINE,Alu
chr2	232576431	T	C	0.00593	PTMA	+	FALSE
chr1	16918502	A	G	0.00098	NBPF1	-	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr7	128607384	G	A	0.00925	TNPO3	-	FALSE
chr2	61278030	A	G	0.00218	PEX13	+	TRUE	AluY	SINE,Alu
chr1	1419700	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr2	191745653	T	G	0.00799	GLS	+	FALSE
chr12	133297961	A	G	1.06136E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr1	218617543	G	A	0.00291	TGFB2	+	FALSE
chr6	42849746	A	G	0.00042	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr12	98943011	A	G	1.18352E-07	TMPO	+	TRUE	AluSz	SINE,Alu
chr2	10933249	C	T	0.00889	PDIA6	-	FALSE
chr1	101443701	A	G	0.00406	SLC30A7	+	FALSE
chr1	1231173	C	T	1.33148E-07	ACAP3	-	FALSE
chr3	52027636	C	T	0.00965		.	FALSE
chr1	113243048	C	T	0.00023	MOV10	+	FALSE
chr1	36068237	T	C	0.00054	PSMB2	-	TRUE	AluSc	SINE,Alu
chr11	65404866	T	G	0.00664	PCNX3	+	FALSE	(T)n	SINE,Alu
chr3	10255002	C	G	0.00043	IRAK2	+	FALSE
chr4	17803748	T	A	0.00859	DCAF16	-	FALSE
chr1	36068231	T	C	0.00121	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	100657328	A	G	0.00682	DBT	-	FALSE	(AC)n	SINE,Alu
chr12	69237534	A	G	0.00106	MDM2	+	TRUE
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr8	27592828	G	A	0.00133	CCDC25	-	FALSE
chr2	55255313	T	A	0.00675	RTN4	-	FALSE
chr1	19543349	T	C	0.00090	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	86119441	G	A	0.00905	ZNHIT6	-	FALSE
chr8	144940327	G	A	0.00989	EPPK1	-	FALSE
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr1	148556753	G	A	0.00272		.	FALSE
chr12	51325237	A	G	5.73531E-05	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr14	105237680	G	C	6.20821E-05	AKT1	-	FALSE
chr1	193054575	C	G	0.00029	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr14	50361197	G	T	1.76251E-06	ARF6	+	FALSE
chr1	15896984	A	G	0.00297	DNAJC16	+	FALSE	FLAM_C	SINE,Alu
chr14	20923558	A	C	0.00373	APEX1	+	FALSE
chr1	55207983	T	A	0.00018	MROH7-TTC4,TTC4	+	FALSE
chr1	214529725	T	C	0.00535	PTPN14	-	TRUE
chr1	28824041	T	A	0.00627	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr1	28662186	A	G	0.00774	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	207219603	T	C	0.00341	YOD1	-	FALSE
chr3	52800284	T	C	6.08396E-05	NEK4	-	FALSE
chr6	13788294	T	C	0.00017	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	99164434	G	A	0.00309	SNX7	+	FALSE
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr4	10447986	T	A	0.00077	ZNF518B	-	FALSE
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr5	149823791	G	T	0.00480		.	FALSE
chr3	24019977	A	C	0.00281	NR1D2	+	FALSE
chr7	5568366	A	G	0.00400	ACTB	-	FALSE
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr3	32524229	G	T	0.00359	CMTM6	-	FALSE
chr2	3592638	T	C	0.00164	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	26161129	A	C	0.00607	AUNIP	-	FALSE
chr7	65992665	T	C	2.17687E-05		.	FALSE	AluJr	SINE,Alu
chr12	9464358	A	G	0.00056	LOC642846	+	FALSE
chr6	26095468	A	G	0.00980	HFE	+	TRUE	AluY	SINE,Alu
chr1	10043363	A	G	0.00509	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	17199259	G	A	0.00217	LOC440570	+	FALSE
chr4	13602231	G	A	0.00646	BOD1L1	-	FALSE
chr4	107246251	G	T	3.16074E-09	AIMP1	+	FALSE
chr1	109475569	A	G	0.00046	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr15	42859922	A	G	0.00731	HAUS2	+	TRUE	AluSx1	SINE,Alu
chr1	16384843	G	C	0.00049	FAM131C	-	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr16	4935146	C	T	0.00676	PPL	-	FALSE
chr1	32637063	C	T	0.00071	KPNA6	+	FALSE
chr1	226333560	A	T	0.00339	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	77759578	A	G	4.05543E-05	AK5	+	FALSE
chr7	29962664	A	C	0.00077	SCRN1	-	FALSE
chr2	85773376	T	C	0.00607	GGCX	-	TRUE	AluY	SINE,Alu
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr1	9328213	A	G	5.00055E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	37230734	C	T	0.00192	HEATR5B	-	FALSE
chr2	24225006	A	G	0.00141		.	FALSE	AluSx	SINE,Alu
chr1	46828657	C	T	0.00378	NSUN4	+	FALSE
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr1	52817434	T	C	0.00219	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr1	110913120	C	T	0.00627	SLC16A4	-	FALSE
chr2	206981874	T	C	0.00060		.	FALSE	AluJb	SINE,Alu
chr7	44618353	T	C	0.00168	TMED4	-	TRUE	AluSq2	SINE,Alu
chr19	19793729	A	G	0.00124	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr1	6614188	C	T	0.00906	NOL9	-	FALSE
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr19	21474901	T	C	1.34658E-06	ZNF708	-	TRUE	AluSc	SINE,Alu
chr2	183642652	G	A	0.00309	DNAJC10	+	FALSE
chr3	182637840	C	T	1.61172E-05	ATP11B	+	FALSE
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	9328120	A	G	0.00386	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	32373831	T	G	0.00252	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr3	120114953	G	A	0.00373	FSTL1	-	FALSE
chr1	85733095	G	A	0.00651	BCL10	-	FALSE
chr19	42375627	A	G	0.00463		.	FALSE	AluSx	SINE,Alu
chr1	201845899	G	T	1.72907E-05	IPO9	+	FALSE
chr19	58357211	A	G	0.00041	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr15	74319733	A	G	0.00524	PML	+	TRUE	AluJr	SINE,Alu
chr1	10520180	T	C	0.00267		.	FALSE	AluSx	SINE,Alu
chr1	3761479	C	T	0.00226	CEP104	-	FALSE
chr1	143399333	T	A	0.00339		.	FALSE	L1MC4	SINE,Alu
chr3	141667149	T	C	0.00273	TFDP2	-	TRUE	AluSx	SINE,Alu
chr7	130629624	T	C	0.00435	LINC-PINT	-	TRUE
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr5	125962169	A	G	0.00013	PHAX	+	TRUE	AluSc	SINE,Alu
chr3	196044973	C	T	0.00985	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr1	3546128	A	G	0.00703	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	67874252	C	A	0.00558	SERBP1	-	FALSE
chr1	19543356	T	C	0.00256	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	39552066	T	C	0.00370	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr3	15113042	C	T	4.09809E-05	RBSN	-	FALSE
chr2	39212567	T	G	0.00546	SOS1	-	FALSE
chr1	89518173	T	A	0.00465	GBP1	-	FALSE
chr1	100658578	G	A	0.00012	DBT	-	FALSE
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr6	42045545	A	G	0.00440	TAF8	+	TRUE	AluSz	SINE,Alu
chr3	181431106	C	G	0.00542	SOX2-OT,SOX2	+	FALSE
chr1	145688665	T	A	0.00015	NBPF20,NBPF10,RNF115	+	FALSE
chr4	57326291	A	G	0.00549	PAICS	+	TRUE	AluJr	SINE,Alu
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr5	115165731	T	C	5.24208E-07	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	894378	T	A	0.00068	NOC2L	-	FALSE
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr7	102119322	T	C	0.00834	POLR2J	-	FALSE
chr1	1663957	C	T	0.00345	SLC35E2	-	FALSE
chr1	11083395	C	T	0.00616	TARDBP	+	FALSE
chr11	8707397	T	A	0.00046	RPL27A	+	FALSE
chr1	165877575	A	C	0.00675	UCK2	+	FALSE
chr4	25253995	C	T	9.95051E-10	PI4K2B	+	FALSE
chr9	108152702	G	A	2.83018E-05	SLC44A1	+	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr19	59093998	A	G	2.36787E-07	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	16890598	T	A	0.00375	NBPF1	-	FALSE
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr1	109475635	T	C	0.00458	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr2	96934504	T	C	0.00021	CIAO1	+	FALSE
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr2	132049915	A	G	0.00226	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr16	81064656	A	G	0.00120	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	6161107	A	T	0.00218	KCNAB2	+	FALSE
chr3	148748380	T	C	0.00240	HLTF	-	FALSE
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr1	201846632	C	T	7.46598E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	10518756	T	C	0.00323		.	FALSE	AluSx1	SINE,Alu
chr21	34728099	A	G	1.57787E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr3	45960560	T	A	0.00201	FYCO1	-	FALSE
chr14	19687172	C	T	0.00389	DUXAP10	+	FALSE
chr7	116339672	C	T	0.00876	MET	+	FALSE
chr6	44417182	A	G	0.00018	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	15015	G	C	0.00809	WASH7P	-	FALSE
chr2	76672504	A	G	2.97414E-06		.	FALSE	7SK	SINE,Alu
chr1	9740895	A	T	0.00136	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr6	33268621	T	C	0.00367		.	FALSE	AluY	SINE,Alu
chr1	24934334	A	G	0.00031	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr2	132278713	T	C	0.00317	LOC150776	+	FALSE
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	33149495	A	G	0.00421	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	18808465	T	A	0.00957	KLHDC7A	+	FALSE
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr11	119533726	A	G	0.00169	NECTIN1	-	FALSE
chr2	206987738	T	C	0.00859		.	FALSE	AluJb	SINE,Alu
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr1	145282904	A	G	0.00308	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	12071680	A	G	0.00127	MFN2	+	FALSE
chr1	197070442	G	T	0.00468	ASPM	-	FALSE
chr5	36143392	C	T	0.00151	LMBRD2	-	FALSE
chr1	7827697	G	C	0.00760	CAMTA1	+	FALSE
chr3	10192704	A	G	0.00091	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	16889413	T	C	1.64789E-05	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr2	54888359	A	G	3.08576E-05	SPTBN1	+	FALSE
chr1	28826118	A	G	0.00948	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr16	81422951	T	C	0.00074		.	FALSE
chr4	57327058	A	G	0.00315	PAICS	+	TRUE	AluSx1	SINE,Alu
chr6	3021360	T	C	0.00321	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr14	23794554	G	A	0.00966	BCL2L2-PABPN1,PABPN1	+	FALSE	A-rich	SINE,Alu
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	86047210	C	T	0.00201	CYR61	+	FALSE
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr3	194124421	A	G	0.00024	ATP13A3	-	FALSE
chr1	10520383	T	C	0.00401		.	FALSE	AluSx1	SINE,Alu
chr1	168220529	A	G	0.00161		.	FALSE	AluSz6	SINE,Alu
chr1	19542310	T	C	0.00532	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr12	54634284	T	C	0.00247	CBX5	-	TRUE	AluJr	SINE,Alu
chr3	12940346	G	A	0.00411	IQSEC1	-	FALSE
chr7	128143606	A	G	4.95106E-06		.	FALSE	AluJr4	SINE,Alu
chr1	6683578	T	C	0.00497	PHF13	+	FALSE
chr6	149912307	A	G	0.00026		.	FALSE	AluSc	SINE,Alu
chr15	65442546	T	C	0.00564	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	153643449	G	C	0.00704	ILF2	-	FALSE
chr1	17313654	C	T	0.00714	ATP13A2	-	FALSE
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr19	16661541	T	C	0.00120	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr1	10517659	T	C	0.00513		.	FALSE	AluSx1	SINE,Alu
chr1	3371371	C	G	0.00367	ARHGEF16	+	FALSE
chr9	80888613	A	G	0.00904		.	FALSE	AluSx	SINE,Alu
chr1	6283305	T	C	0.00496	ICMT	-	TRUE	AluSx3	SINE,Alu
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu
chr2	96573123	C	T	0.00413	ANKRD36C	-	FALSE
chr1	33148635	A	G	5.38540E-05	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	44417835	A	G	8.27091E-07	CDC5L	+	TRUE	AluSx	SINE,Alu
chr1	145689491	A	G	0.00694	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	223436459	A	T	1.48017E-05	FARSB	-	FALSE
chr1	120612194	C	G	1.19417E-05	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr1	145511993	A	G	0.00088	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr1	220231370	T	C	0.00826	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	1653093	A	G	0.00768	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr1	93617406	A	T	0.00275	TMED5	-	FALSE
chr1	109967951	A	C	0.00095	PSMA5	-	FALSE
chr2	37330368	T	C	0.00069		.	FALSE	AluSq2	SINE,Alu
chr1	214524556	T	C	0.00730	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	62380298	G	A	0.00025	PATJ	+	FALSE
chr2	37327662	T	C	0.00220		.	FALSE
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr1	31837516	G	C	5.10721E-05	ZCCHC17	+	FALSE
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	11783001	A	G	0.00012		.	FALSE	AluSx	SINE,Alu
chr2	109301115	T	A	0.00150	LIMS1	+	FALSE
chr1	86117191	T	C	1.34616E-06	ZNHIT6	-	TRUE	AluSg	SINE,Alu
chr5	65452100	G	T	0.00600	SREK1	+	FALSE	(TTTTTG)n	SINE,Alu
chr1	109479978	G	T	0.00057	CLCC1	-	FALSE
chr1	53291434	A	G	0.00108	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	208619315	A	G	0.00091	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	57743171	C	T	1.04824E-07	SLMAP	+	FALSE
chr10	75008846	T	C	0.00135	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr1	16928126	G	C	0.00958	NBPF1	-	FALSE	MLT1E3	SINE,Alu
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	37429737	A	G	3.16512E-05	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr17	65334828	T	C	0.00160	PSMD12	-	TRUE	AluSq	SINE,Alu
chr16	58054477	T	C	0.00180	USB1	+	FALSE
chr7	17384437	A	G	0.00192	AHR	+	TRUE	AluSx	SINE,Alu
chr1	9160989	T	C	0.00041		.	FALSE	AluJb	SINE,Alu
chr3	196670095	C	A	1.97381E-07	NCBP2-AS2	+	FALSE
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr18	47014856	T	A	0.00722	RPL17-C18orf32,RPL17	-	FALSE
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	144931727	G	A	4.04936E-05	NBPF20,PDE4DIP	+,-	FALSE
chr6	42854739	A	C	0.00671	RPL7L1	+	FALSE	AluSc	SINE,Alu
chr4	47514685	C	T	2.65771E-05	ATP10D	+	FALSE
chr6	153314040	G	A	0.00041	MTRF1L	-	FALSE
chr1	241796948	T	C	0.00082	OPN3,CHML	-	FALSE
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	93603188	A	G	0.00374	MTF2	+	FALSE
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr17	5288082	A	G	0.00184	RABEP1	+	TRUE
chr1	9161203	T	C	3.69156E-05		.	FALSE	AluSx	SINE,Alu
chr1	1647814	T	C	8.49337E-05	CDK11B,CDK11A	-	FALSE
chr1	33148691	A	G	0.00207	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	37328075	T	C	0.00863		.	FALSE
chr4	5743512	T	C	0.00045	EVC	+	FALSE
chr2	46612340	G	T	3.13955E-05	EPAS1	+	FALSE
chr1	2336210	C	T	0.00175	RER1	+	FALSE
chr4	68484330	G	A	0.00131	UBA6	-	FALSE
chr3	45721934	A	G	0.00639	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	19586532	A	G	0.00188	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10520296	T	C	0.00299		.	FALSE	AluSx	SINE,Alu
chr1	53289688	A	G	0.00059	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	230629138	C	T	0.00958	TRIP12	-	FALSE
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr2	85548074	T	C	0.00428	TGOLN2	-	FALSE
chr1	36068237	T	C	0.00812	PSMB2	-	TRUE	AluSc	SINE,Alu
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	19543465	T	C	0.00427	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	230974329	A	G	0.00355	C1orf198	-	FALSE
chr19	16663345	T	C	0.00304	SLC35E1	-	TRUE	AluSg	SINE,Alu
chr10	88951001	G	A	0.00033	FAM35A	+	FALSE
chr3	48632596	A	G	0.00666		.	FALSE
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr1	35648840	G	T	0.00543	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr1	38326661	T	C	0.00023	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	9160900	T	C	0.00893		.	FALSE	AluJb	SINE,Alu
chr1	19934793	G	A	0.00376	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	144594170	C	T	0.00636	NBPF20	+	FALSE
chr3	44692564	C	G	0.00182	ZNF35	+	FALSE
chr6	42854664	A	G	5.02680E-07	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr10	79800437	T	A	0.00445	RPS24	+	FALSE
chr1	236744712	C	A	0.00054	HEATR1	-	FALSE
chr3	14183410	T	C	1.62266E-06	TMEM43	+	FALSE
chr1	569981	C	A	4.36771E-05		.	FALSE
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	3545191	C	T	5.51731E-05	TPRG1L	+	FALSE
chr1	100657416	C	T	0.00102	DBT	-	FALSE	AluJb	SINE,Alu
chr3	15114293	T	C	2.60553E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	36067760	T	C	0.00213	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	184550501	A	G	0.00508	VPS8	+	FALSE
chr5	37290413	T	C	0.00467		.	FALSE	AluSz	SINE,Alu
chr1	46828734	T	C	0.00604	NSUN4	+	FALSE
chr1	101443431	C	T	0.00013	SLC30A7	+	FALSE	AluSq2	SINE,Alu
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr8	25222165	A	G	0.00019	DOCK5	+	FALSE
chr2	3592615	T	C	0.00331	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	75671215	C	T	0.00019	SLC44A5	-	FALSE
chr1	16060892	C	T	0.00946	PLEKHM2	+	FALSE
chr1	77165735	A	G	0.00227		.	FALSE
chr1	53291382	A	G	0.00114	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr12	12796592	A	C	0.00801	CREBL2	+	FALSE
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr1	28662253	A	G	0.00117	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	53291434	A	G	0.00124	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	180247483	T	C	0.00167		.	FALSE
chr1	95362514	G	T	0.00279	CNN3	-	FALSE
chr2	197001673	T	C	0.00043	STK17B	-	FALSE
chr1	46076481	A	G	0.00144	NASP	+	TRUE	AluSx	SINE,Alu
chr2	61416403	T	G	0.00350	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	1683565	G	A	0.00552	NADK	-	FALSE
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr6	149912555	G	A	0.00551		.	FALSE
chr19	19745479	C	T	0.00175	GMIP	-	FALSE
chr7	44841236	G	A	0.00819	PPIA	+	FALSE
chr1	144607387	G	C	0.00016	NBPF20	+	FALSE
chr1	10368093	C	A	0.00131	KIF1B	+	FALSE
chr1	15818081	T	C	9.65448E-05	CASP9	-	TRUE	AluJb	SINE,Alu
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr11	125526125	A	G	0.00374	CHEK1	+	TRUE	FRAM	SINE,Alu

RBP	SMNDC1
Knock-Method	shRNA
RBP Family	SMN
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR995ZGJ
Platform	HiSeq
Pubmed ID	32252787

SMNDC1 - Target Gene Network