Dataset Overview
RBPUBTF
Knock-MethodsiRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR312FIT
PlatformHiSeq
Pubmed ID32252787

UBTF - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of UBTF
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of UBTF


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1182360928AC0.00635GLUL-FALSE
chr110517653TC1.73226E-05.FALSEAluSx1SINE,Alu
chr273460299GC0.00180PRADC1-FALSE(CGGCGC)nSINE,Alu
chr344485914TC0.00920ZNF445-FALSEMIRbSINE,Alu
chr3196044972CT0.00258TCTEX1D2,TM4SF19-TCTEX1D2-FALSE
chr8145159718GC0.00409MAF1+FALSE
chr1114938247GA0.00197TRIM33-FALSE
chr349453834CT0.00518TCTA+FALSE
chr8144940798TC0.00255EPPK1-FALSE
chr116933110TC0.00143NBPF1-FALSEL1MC2SINE,Alu
chr5130537789AG0.00822LYRM7+TRUEAluJbSINE,Alu
chr3191097966TC1.34670E-13CCDC50+FALSE
chr1194801635GT0.00844SRSF8+FALSE
chr199672981TC0.00041.FALSEAluSx3SINE,Alu
chr811701429TC0.00496CTSB-TRUEAluSx1SINE,Alu
chr177166017GA0.00627.FALSE
chr146076481AG0.00144NASP+TRUEAluSxSINE,Alu
chr579923361TC0.00050DHFR-TRUEAluJrSINE,Alu
chr116892907GA0.00244NBPF1-FALSE
chr19416151GA0.00292SPSB1+FALSE
chr1168218504TC0.00748.FALSEAluSzSINE,Alu
chr324019989CT0.00339NR1D2+FALSE
chr116703160AT0.00111MRPL17-FALSE
chr155207988GA0.00914MROH7-TTC4,TTC4+FALSE
chr254014303AG0.00901GPR75-ASB3,ERLEC1+,-FALSE
chr1160967899TC0.00661F11R-TRUEAluSpSINE,Alu
chr227293350AT0.00314AGBL5,OST4+,-FALSE
chr110521260TC0.00658DFFA-TRUEAluYSINE,Alu
chr1120572572CT0.00084NOTCH2-FALSE
chr595222277CT0.00599ELL2-FALSE
chr1184761312TC0.00443FAM129A-TRUEAluJoSINE,Alu
chr16282401TC0.00665ICMT-TRUEAluSzSINE,Alu
chr1110023610GA0.00636SYPL2+FALSE
chr275888160AC0.00368MRPL19+FALSEL1MB4SINE,Alu
chr514510067GT0.00130TRIO+FALSE
chr261277776AG0.00178PEX13+TRUEAluYSINE,Alu
chr413570943TG2.17672E-09BOD1L1-FALSE
chr356703746AC0.00027FAM208A-FALSE
chr19162223TC0.00586.FALSEAluSxSINE,Alu
chr125894464GA0.00527LDLRAP1+FALSEMIRbSINE,Alu
chr1184661773GT0.00082EDEM3-FALSE
chr136770601GT0.00055THRAP3+FALSE(T)nSINE,Alu
chr237328087TC0.00335.FALSE
chr1269160574AG0.00891.FALSEAluJbSINE,Alu
chr11118915753TC8.93388E-07HYOU1-FALSE
chr8143352206TC0.00500TSNARE1-FALSE
chr2114352238GA1.72390E-05WASH2P+FALSE
chr1149819554TC0.00137.FALSEMLT1C2SINE,Alu
chr349394834GA0.00000GPX1-FALSE
chrX123045405AG0.00551XIAP+TRUEAluJoSINE,Alu
chr652442880GT5.05556E-08TRAM2-AS1+FALSE
chr1565442602TC8.94083E-05CLPX-TRUEAluSg4SINE,Alu
chr1145512078AG0.00907NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr154493443CA0.00872TMEM59-FALSEAluSz6SINE,Alu
chr3195243007AC3.91570E-06PPP1R2-FALSE
chr119585519AG6.02134E-06MRTO4+TRUEAluSc8SINE,Alu
chr2206987096TC0.00795.FALSEAluSxSINE,Alu
chr1197128726GA2.50329E-05ZBTB41-FALSE
chr2227662565AC0.00028IRS1-FALSE
chr237327670TC0.00021.FALSE
chr110517456TC0.00722.FALSEAluSx1SINE,Alu
chr1184762524TC0.00778FAM129A-TRUEAluSzSINE,Alu
chr129443675TC0.00190EPB41+FALSE
chr135251229GA0.00516GJB3+FALSE
chr110517672TC0.00070.FALSEAluSx1SINE,Alu
chr1114455907GA0.00705DCLRE1B+FALSE
chr124995941AG0.00382SRRM1+FALSE
chr1228881190TG0.00043RHOU+FALSE
chr9114696428GT0.00163UGCG+FALSE(TGTTTTT)nSINE,Alu
chr310322521TC0.00531TATDN2+FALSE
chr237330391TC0.00134.FALSEAluSq2SINE,Alu
chr119232017TG0.00723IFFO2-FALSE
chr110517635TC0.00124.FALSEAluSx1SINE,Alu
chr1681064656AG0.00120CENPN+TRUEAluSgSINE,Alu
chr393846961AG0.00454.FALSEAluSq2SINE,Alu
chr12124146073AG0.00085GTF2H3+FALSEAluSx4SINE,Alu
chr9115447535TC3.15593E-07INIP-TRUEAluJbSINE,Alu
chr5179720333AG0.00308.FALSE
chr717384354AG0.00282AHR+TRUEAluSxSINE,Alu
chr116958833TA0.00765.FALSE
chr177760704AG0.00297NAA38-FALSE
chr136644564CT1.56500E-06MAP7D1+FALSE
chr127248275CT0.00047NUDC+FALSE
chr189570148AG0.00084.FALSE
chr264863970CT9.52027E-09SERTAD2-FALSE
chr125570563AT0.00276RSRP1-FALSEAluSINE,Alu
chr6160101723TC0.00234SOD2-TRUEAluSzSINE,Alu
chr11309464CT3.88389E-12AURKAIP1-FALSE
chr358141791AG0.00696FLNB+FALSE
chr633281842GT0.00514.FALSE
chr136068295TC0.00910PSMB2-TRUEAluScSINE,Alu
chr1145512950AG0.00996NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1110173775GT0.00038AMPD2+FALSE
chr812879062TC0.00035KIAA1456+FALSE
chr642854681AG0.00011RPL7L1+TRUEAluScSINE,Alu
chr1590815820AG0.00171.FALSEFRAMSINE,Alu
chr153289688AG5.35400E-06ZYG11B+TRUEAluSzSINE,Alu
chr261278017AG8.96590E-05PEX13+TRUEAluYSINE,Alu
chr1610624953TC0.00056EMP2-TRUEAluSx3SINE,Alu
chr1829410068CT0.00807TRAPPC8-FALSE
chr120977599CG0.00489PINK1,PINK1-AS+,-FALSE
chr1168213597AG0.00481.FALSEAluSx1SINE,Alu
chr1148561089TC0.00975NBPF15+FALSE
chr1172411496AG0.00361C1orf105,PIGC+,-FALSE
chr2206983115TC0.00992.FALSEAluJbSINE,Alu
chr119565338CT0.00631LOC101927895,EMC1+,-FALSE
chr116933631GA0.00927NBPF1-FALSEGA-richSINE,Alu
chr697592900CA0.00076MMS22L-FALSE
chr1227848053AT0.00090PPFIBP1+FALSE
chr642857058AG3.29248E-05RPL7L1+TRUEAluSpSINE,Alu
chr1757281021AG1.37320E-05PRR11+TRUEAluSzSINE,Alu
chr2132481529CT0.00028C2orf27A+FALSE
chr1071909957GT0.00853.FALSE
chr345722253AG0.00670LIMD1,LIMD1-AS1+,-FALSEAluSzSINE,Alu
chr132801694AC0.00847MARCKSL1-FALSE
chr1179326882AG0.00020SOAT1+TRUEAluJoSINE,Alu
chr237330368TC0.00069.FALSEAluSq2SINE,Alu
chr1917414126CT0.00029ABHD8-FALSE
chr19427842AG0.00923SPSB1+FALSE
chr1431916782TC4.67250E-05LOC101927124,DTD2+,-FALSEAluSc8SINE,Alu
chr1145282904AG0.00542NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr638670804GC0.00400GLO1-FALSE
chr556177846GC0.00952MAP3K1+FALSE
chr19161550GA0.00196.FALSE
chr7156763332AG0.00090NOM1+TRUEAluSxSINE,Alu
chr11650832AG0.00407CDK11B,CDK11A-FALSE
chr3191114309AT1.88175E-05CCDC50+FALSE
chr9140174976GT0.00045TOR4A+FALSE
chr119447819TC0.00337UBR4-FALSE
chr128823671TC0.00073PHACTR4+FALSE
chr115668319GA0.00489FHAD1+FALSE
chr187328397AT0.00252SEP15-FALSE
chr12123346997GC0.00275HIP1R+FALSE
chr310290511GT0.00289TATDN2+FALSE
chr1184661933GA0.00138EDEM3-FALSE
chr775958147TA0.00917YWHAG-FALSE
chr2103333653TC0.00426MFSD9-FALSEAluYm1SINE,Alu
chr127202963CT0.00106.FALSEAluSq2SINE,Alu
chr596372165GA0.00149.FALSE
chr410443062TG0.00303ZNF518B-FALSE
chr794297294TG0.00494PEG10+FALSE
chr76063283CT0.00032AIMP2,EIF2AK1+,-FALSE
chr224522807CT0.00079ITSN2-FALSE
chr255459824CT0.00786RPS27A+FALSE
chr116944953TG0.00158CROCCP2-FALSE
chr1143135166GT0.00325LOC102723769-FALSE
chr3125248854AC0.00014OSBPL11-FALSE
chr1244869241CA0.00213DESI2+FALSE
chr830536078TC0.00509GSR-FALSEAluJrSINE,Alu
chr1120163518CT0.00067ZNF697-FALSE
chr352288956AT0.00042WDR82-FALSE
chr116892135GA0.00508NBPF1-FALSE
chr153289852AG0.00020ZYG11B+TRUEFRAMSINE,Alu
chr225042625CG0.00766CENPO,ADCY3+,-FALSE
chr2201774264TC0.00639.FALSEAluSzSINE,Alu
chr1182809019GA0.00274DHX9+FALSE
chr145116985CT0.00318RNF220+FALSE
chr1207942472AG2.11430E-05CD46+TRUEAluSg4SINE,Alu
chr153292607TA0.00680ZYG11B+FALSE
chr116958063CT0.00246.FALSE
chr1145324364CG0.00343NBPF20,NBPF10+FALSE
chr128859267AC2.52971E-07RCC1+FALSE
chr131905887AC0.00245SERINC2+FALSE
chr128824065CT0.00345PHACTR4+FALSE
chr144035352CT0.00170PTPRF+FALSE
chr342252924GC0.00079TRAK1+FALSE
chr1100548780AT0.00791MFSD14A+FALSE
chr8146200283TC0.00082ZNF252P-TRUEAluScSINE,Alu
chr143917637GA0.00164SZT2,HYI+,-FALSE
chr3141164940CA0.00194ZBTB38+FALSE
chr1204095687CA5.97770E-05SOX13+FALSE
chr1179829425TC1.55944E-05TOR1AIP2-TRUEAluJrSINE,Alu
chr2230876757GC0.00321FBXO36+FALSE
chr19642832CA0.00082.FALSE
chr133149399AG0.00148SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr5178224547AG0.00064AACSP1-FALSE
chr193617546TC0.00026TMED5-FALSE
chr3195436334AG0.00017LINC00969+TRUEAluJrSINE,Alu
chr3158547143GA0.00178MFSD1+FALSE
chr1591044382AG0.00453IQGAP1+FALSE
chr862626962CT0.00823ASPH-FALSE
chr398518155AT0.00777DCBLD2-FALSE
chr1225357680TC0.00861ETFRF1+FALSE
chr2103333654AT0.00488MFSD9-FALSEAluYm1SINE,Alu
chr237328034TC0.00035.FALSE
chr119543349TC2.12419E-08LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr143394612TC0.00154SLC2A1-FALSE
chrX54587196AG0.00392GNL3L+TRUEAluSq2SINE,Alu
chr572876776CA0.00875UTP15+FALSE
chr153291435AG0.00049ZYG11B+TRUEAluJrSINE,Alu
chr23504687AG0.00755ADI1-FALSE
chr3109049177AT0.00044DPPA4-FALSEAluSpSINE,Alu
chr110517998TC0.00821.FALSEAluJrSINE,Alu
chr553841240AG0.00416SNX18+FALSE
chr1241796948TC0.00082OPN3,CHML-FALSE
chr229170763GA5.21672E-05WDR43+FALSE
chr186815303TC0.00571ODF2L-FALSE
chr12125512541AG6.52088E-06.FALSE
chr1942375554AG0.00458.FALSEAluSxSINE,Alu
chr12520435GC0.00041FAM213B+FALSE
chr261386572CG0.00821C2orf74+FALSEAluSzSINE,Alu
chr1118409491AT0.00471GDAP2-FALSE(A)nSINE,Alu
chr186117122TC0.00462ZNHIT6-FALSEAluSgSINE,Alu
chr339137793CT0.00363WDR48+FALSE
chr110520076TC0.00075.FALSEAluSxSINE,Alu
chr7920724AG0.00328GET4+TRUEAluSx1SINE,Alu
chr298089475TA0.00385LOC100506076,LOC100506123-FALSE
chr484525986GT0.00081GPAT3+FALSE(TTGTT)nSINE,Alu
chr146828700AG0.00273NSUN4+FALSE
chr110517352TC0.00064.FALSEAluJrSINE,Alu
chr145976147GA0.00476MMACHC+FALSEAluJrSINE,Alu
chrX3526659CG0.00188PRKX-FALSE(AC)nSINE,Alu
chr363996262CT0.00681PSMD6-AS2,PSMD6+,-FALSE
chr136299630AG0.00828AGO4+FALSE
chr1120839743CT0.00647FAM72B+FALSE
chr1666923393AG0.00228PDP2+TRUEAluSzSINE,Alu
chr119586360TC0.00023MRTO4+FALSE
chr120238572AT0.00950OTUD3+FALSE
chr823087535AG0.00491LOC389641+FALSEAluSx1SINE,Alu
chr19161011TC7.97270E-05.FALSEAluJbSINE,Alu
chr3160969268CT0.00375NMD3+FALSE
chr194351063AT0.00188GCLM-FALSE
chr197116159GT0.00368INSR-FALSE
chr15937327CT0.00703NPHP4-FALSE
chr133086876TC0.00399ZBTB8OS-TRUEAluYSINE,Alu
chr29629305AT0.00591ADAM17-FALSE
chr274442550AT0.00826.FALSE
chr11234095CA0.00039ACAP3-FALSE
chr1185069561AG0.00675RNF2+FALSE
chr110517550TC0.00457.FALSEAluSx1SINE,Alu
chr440631476CA5.49937E-05RBM47-FALSE
chr373115786TC3.88619E-05PPP4R2+FALSE
chr111783295GA0.00977.FALSEMER58BSINE,Alu
chr170718272AT0.00166.FALSE
chr110519982TC3.22355E-05.FALSEAluJrSINE,Alu
chr1142660072TG0.00773.FALSE
chr11419768AG0.00250ATAD3B+TRUEAluYk2SINE,Alu
chr1160967833TC0.00717F11R-TRUEAluSpSINE,Alu
chr1180991777TC0.00629STX6-FALSE
chr131346203AC0.00050SDC3-FALSE
chr1145369556AG0.00373NBPF20,NBPF10+TRUEL1MC4SINE,Alu
chr348787715TC0.00863PRKAR2A-TRUEAluSpSINE,Alu
chr110517290TC0.00119.FALSEAluJrSINE,Alu
chr1592715131AT0.00306SLCO3A1+FALSE
chr132661564CT0.00058TXLNA+FALSE(T)nSINE,Alu
chr12100556267TC0.00071GOLGA2P5-FALSE
chr1958356376AG0.00061ZNF587B+TRUEAluSxSINE,Alu
chr5125961204AG0.00196PHAX+TRUEAluSzSINE,Alu
chr3196670086TG1.91816E-05NCBP2-AS2+FALSE
chr1292537702TA0.00368BTG1-FALSE
chr2201774393TC0.00971.FALSEAluSzSINE,Alu
chr128825337AG0.00904PHACTR4+TRUEAluSgSINE,Alu
chr1179044169AG0.00039FAM20B+TRUEAluSxSINE,Alu
chr185786299TA0.00502DDAH1-FALSE
chr1947278340AG0.00449SLC1A5-FALSE(AC)nSINE,Alu
chr2176789423CA0.00441LNPK-FALSEMSTB1SINE,Alu
chr642854664AG5.02680E-07RPL7L1+TRUEAluScSINE,Alu
chr16282401TC0.00806ICMT-TRUEAluSzSINE,Alu
chr110519947TC0.00184.FALSEAluJrSINE,Alu
chr5149363273AG0.00114SLC26A2+TRUEAluJrSINE,Alu
chr3124948047CG0.00670ZNF148-FALSE
chr63021492AG0.00613HTATSF1P2-FALSETigger3aSINE,Alu
chr16582353TC0.00121NOL9-TRUEAluSx1SINE,Alu
chr110177553CG0.00474UBE4B+FALSE
chr145976722GT0.00292MMACHC,PRDX1+,-FALSE
chr145244414TA0.00456.FALSE
chr270677439AG0.00498TGFA-FALSE
chr299812864AG0.00810MRPL30+TRUEAluJbSINE,Alu
chr10115526177AG0.00237PLEKHS1+FALSE
chr1495555551CT0.00404DICER1-FALSE
chr153289759AG0.00383ZYG11B+TRUEAluSzSINE,Alu
chr116889624TC0.00614NBPF1-TRUE
chr314986133TC1.90274E-11FGD5-AS1-TRUEFLAM_CSINE,Alu
chr145975669AG0.00695MMACHC+TRUEAluSx4SINE,Alu
chr120238573TC0.00204OTUD3+FALSE
chr120976075TC0.00351PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr1243289448GA0.00036CEP170-FALSE
chr3180694862CT0.00638FXR1+FALSE(T)nSINE,Alu
chr136068184TC0.00177PSMB2-TRUEAluScSINE,Alu
chr153291434AG0.00545ZYG11B+TRUEAluJrSINE,Alu
chr110519148TC0.00611.FALSEAluSx3SINE,Alu
chr2103332887TA0.00515MFSD9-FALSEL2d2SINE,Alu
chr1552202957GT0.00094TMOD3+FALSE(T)nSINE,Alu
chr1073994170AG0.00218ANAPC16+TRUEAluJrSINE,Alu
chr136534024AG0.00635.FALSEFLAM_ASINE,Alu
chr1214529725TC0.00535PTPN14-TRUE
chr145280500AG0.00857.FALSEAluSxSINE,Alu
chr133149496AG0.00469SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr153288870AG0.00501ZYG11B+TRUEAluJoSINE,Alu
chr1120611960CT0.00062NOTCH2-FALSE
chr224227357AG0.00295.FALSEAluScSINE,Alu
chr2170495929TA0.00625.FALSE
chr5140594467GA0.00045PCDHB13+FALSE
chr119953120GA0.00212MINOS1,MINOS1-NBL1+FALSE
chr12434523TC0.00064PLCH2+FALSE
chr158999651TG0.00484OMA1-FALSE
chr1120612194CG0.00091NOTCH2-FALSE(CCG)nSINE,Alu
chr1162354203AG0.00956C1orf226+FALSE

Differential Expression Gene Analysis