RBPFunction

Dataset Overview

RBP	HNRNPU
Knock-Method	shRNA
RBP Family	SAP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR047IUS
Platform	HiSeq
Pubmed ID	32252787

HNRNPU - Target Gene Network

up-regulated gene

down-regulated gene

Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of HNRNPU

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Gene	Mean Expr. of Control	Mean Expr. of KD/KO	logFC	PValue	FDR
A1BG-AS1	1.63	2.42	0.51016	0.01100	0.01885
AAAS	57.82	75.28	0.37345	8.09564E-09	3.53766E-08
AACS	4.75	6.13	0.35546	0.00030	0.00067
AACSP1	1.84	4.08	1.23778	2.24325E-18	2.77668E-17
AAGAB	41.14	29.88	-0.64237	2.11660E-19	2.85898E-18
AAK1	2.75	2.75	-0.47598	0.00063	0.00135
AAMDC	10.85	17.13	0.46481	0.00435	0.00806
AARS2	10.9	15.97	0.50965	2.18854E-12	1.47448E-11
AARSD1	58.18	47.17	-0.42068	1.17767E-06	3.90255E-06
AATF	76.73	67.06	-0.34002	6.34156E-06	1.88354E-05

Showing 1 to 10 of 8,896 entries

Function Analysis of Target Genes of HNRNPU

Differential Alternative Splicing

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RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
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RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
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RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

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RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

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RBP	LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE	pValue	△Inc	Dataset ID	Sashimi plot
No data available in table

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Differential Variants in RNA (DVRs)

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Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	6684049	G	A	5.41898E-05	PHF13	+	FALSE
chr1	10517314	T	C	0.00073		.	FALSE	AluJr	SINE,Alu
chr1	17314702	C	T	0.00140	ATP13A2	-	FALSE
chr1	62628606	A	G	0.00164	PATJ	+	TRUE	AluSg4	SINE,Alu
chr1	24798068	C	A	0.00381	NIPAL3	+	FALSE	AluJr	SINE,Alu
chr1	146650091	C	A	0.00361	PDIA3P1	+	FALSE
chr1	214524576	T	C	0.00442	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	12628188	T	C	6.05765E-06	DHRS3	-	FALSE
chr1	2336210	C	T	0.00175	RER1	+	FALSE
chr1	144821986	C	T	0.00218	NBPF20,NBPF9	+	FALSE

Showing 1 to 10 of 447 entries

Differential Expression Gene Analysis