RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	10517313	T	C	0.00661		.	FALSE	AluJr	SINE,Alu
chr1	200589813	C	A	1.20032E-05	KIF14	-	FALSE
chr1	148023067	C	T	0.00772	NBPF8	-	FALSE
chr2	37331627	T	C	0.00044		.	FALSE	AluJb	SINE,Alu
chr1	114940210	T	G	0.00028	TRIM33	-	FALSE	(T)n	SINE,Alu
chr6	138413269	A	G	0.00743	PERP	-	FALSE
chr4	1982726	C	T	0.00828	WHSC1	+	FALSE
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr1	19543465	T	C	0.00638	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	172178588	T	C	0.00248	METTL8	-	TRUE	AluSx3	SINE,Alu
chr8	41798912	T	C	0.00892	KAT6A	-	FALSE
chr1	16889004	C	T	0.00977	NBPF1	-	FALSE
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr1	28826250	A	G	0.00489	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr6	24720271	T	G	0.00839		.	FALSE
chr1	100440553	A	G	0.00553	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	1572530	A	C	0.00425	CDK11B	-	FALSE
chr1	10520202	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr19	46053369	T	C	0.00504	OPA3	-	TRUE	AluSx1	SINE,Alu
chr19	42375586	A	G	0.00016		.	FALSE	AluSx	SINE,Alu
chr1	180247483	T	C	0.00167		.	FALSE
chr1	28833494	G	A	0.00122	SNHG3,RCC1	+	FALSE
chr1	145689568	A	G	8.25649E-05	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	26143725	A	T	0.00116	SEPN1	+	FALSE	AluSx	SINE,Alu
chr5	40832553	A	T	0.00121	RPL37	-	FALSE
chr19	58420152	C	A	0.00322	ZNF417	-	FALSE
chr1	10519947	T	C	0.00534		.	FALSE	AluJr	SINE,Alu
chr3	14175262	T	C	3.06250E-10	TMEM43	+	FALSE
chr7	64435677	G	A	0.00366	ZNF117	-	FALSE
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr1	17735300	C	A	0.00128	RCC2	-	FALSE
chr1	108728562	A	T	0.00228	SLC25A24	-	FALSE
chr10	60047611	G	A	0.00855	CISD1	+	FALSE	(A)n	SINE,Alu
chr3	100083423	T	C	0.00678	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	54571380	A	G	0.00332	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr1	201846626	C	A	0.00429	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	9160989	T	C	0.00092		.	FALSE	AluJb	SINE,Alu
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr3	68685888	G	A	0.00280		.	FALSE
chr1	27107950	G	A	0.00249	ARID1A	+	FALSE
chr5	10265488	A	G	0.00120	CCT5	+	FALSE
chr2	118583874	C	G	0.00569	DDX18	+	FALSE
chr1	200375404	T	G	0.00030	ZNF281	-	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	19585554	A	G	2.15626E-06	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	145689693	A	G	0.00088	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr17	4840811	A	G	0.00554	SLC25A11	-	FALSE
chr17	79529443	T	C	0.00153	NPLOC4	-	TRUE	AluSx1	SINE,Alu
chr1	94351064	A	T	0.00212	GCLM	-	FALSE
chr1	225707042	T	C	4.11654E-05	ENAH	-	FALSE
chr15	63363388	G	T	0.00096	TPM1	+	FALSE
chr1	145689533	A	G	0.00618	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr3	49396751	T	C	0.00000	RHOA	-	FALSE
chr1	16768088	G	A	0.00063	NECAP2	+	FALSE
chr1	10042987	A	G	0.00488	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	16889624	T	C	3.50465E-05	NBPF1	-	TRUE
chr1	1653093	A	G	0.00036	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr1	16890130	A	C	0.00054	NBPF1	-	FALSE
chr1	70833400	C	T	0.00224	HHLA3	+	FALSE	LTR7	SINE,Alu
chr12	69237534	A	G	0.00106	MDM2	+	TRUE
chr1	6583701	T	C	0.00029	NOL9	-	FALSE
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	150937961	A	C	0.00060	CERS2	-	FALSE	G-rich	SINE,Alu
chr2	128602967	T	G	0.00026		.	FALSE	AluSp	SINE,Alu
chr1	7737792	C	G	8.96820E-06	CAMTA1	+	FALSE
chr1	65899366	A	C	0.00593	LEPR,LEPROT	+	FALSE
chr2	132481245	T	G	0.00382	C2orf27A	+	FALSE
chr8	48889705	A	G	0.00339	MCM4	+	TRUE	AluSx3	SINE,Alu
chr1	10517659	T	C	0.00513		.	FALSE	AluSx1	SINE,Alu
chr4	17804852	T	C	0.00600	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	227660628	T	G	0.00025	IRS1	-	FALSE
chr2	128063523	G	C	0.00174	MAP3K2	-	FALSE
chr1	93308168	T	A	0.00314	FAM69A	-	FALSE
chr6	42857028	A	G	0.00064	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr11	65404869	G	T	1.77375E-05	PCNX3	+	FALSE
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr1	28825781	A	G	0.00166	PHACTR4	+	TRUE	AluSp	SINE,Alu
chr1	6582221	T	C	0.00879	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr3	185009713	G	T	0.00106	MAP3K13	+	FALSE
chr1	118409491	A	T	0.00471	GDAP2	-	FALSE	(A)n	SINE,Alu
chr3	58306666	A	G	0.00139		.	FALSE	AluSz	SINE,Alu
chr1	56961756	A	G	0.00265	PLPP3	-	FALSE
chr1	108678732	T	C	0.00396	SLC25A24	-	FALSE
chr2	7181560	G	A	0.00599	RNF144A	+	FALSE
chr4	17802919	T	C	0.00857	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	158170017	T	C	0.00662	GALNT5	+	FALSE
chr3	194790434	C	G	0.00705	XXYLT1	-	FALSE
chr13	76378459	T	C	0.00239	LMO7	+	FALSE
chr3	47627382	A	T	2.68370E-06	SMARCC1	-	FALSE
chr2	38971641	T	A	0.00071	SRSF7	-	FALSE
chr3	137787192	T	C	0.00764	DZIP1L	-	FALSE
chr4	2943361	T	C	7.19955E-07	NOP14-AS1,NOP14	+,-	FALSE
chr1	6283296	T	C	0.00122	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	10517527	T	C	0.00453		.	FALSE	AluSx1	SINE,Alu
chr1	114938105	T	A	0.00430	TRIM33	-	FALSE
chr2	197021372	T	A	0.00285	STK17B	-	FALSE
chr2	11323078	C	T	0.00539	ROCK2	-	FALSE
chr1	183213770	G	C	0.00734	LAMC2	+	FALSE
chr6	108364582	T	C	0.00577	OSTM1	-	FALSE
chr2	55462744	C	A	0.00033	RPS27A	+	FALSE
chr4	6677063	G	A	0.00087	LOC93622	+	FALSE
chr1	121133733	G	A	0.00467	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	211917176	C	T	0.00498	LPGAT1	-	FALSE
chr1	36386884	C	T	0.00590	AGO1	+	FALSE
chr5	130537666	A	G	9.26326E-06	LYRM7	+	TRUE	AluJb	SINE,Alu
chr6	99848757	C	T	0.00951	PNISR	-	FALSE	(TCTTTT)n	SINE,Alu
chr1	27876482	C	A	0.00687	AHDC1	-	FALSE
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr2	203744658	T	C	0.00112		.	FALSE	AluSx1	SINE,Alu
chr2	198255334	A	T	0.00551		.	FALSE
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr1	28834586	G	A	0.00044	SNHG3,RCC1	+	FALSE	FRAM	SINE,Alu
chr15	41590287	A	G	0.00568	OIP5-AS1	+	FALSE
chr10	75008846	T	C	0.00135	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	144955288	A	G	0.00574	NBPF20,PDE4DIP	+,-	FALSE
chr1	1469787	C	T	0.00010	ATAD3A	+	FALSE
chr1	155106550	A	G	0.00015	EFNA1	+	FALSE
chr19	198079	T	C	0.00933	LINC01002	-	FALSE
chr1	26161129	A	C	0.00607	AUNIP	-	FALSE
chr12	80168993	G	T	0.00513	PPP1R12A	-	FALSE
chr9	140174976	G	T	0.00045	TOR4A	+	FALSE
chr11	75116734	C	A	0.00453	RPS3	+	FALSE
chr3	37407770	G	T	0.00530	GOLGA4	+	FALSE
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr1	16892276	T	C	0.00209	NBPF1	-	FALSE
chr1	47844403	C	A	0.00511	CMPK1	+	FALSE
chr3	100467676	A	T	0.00288	TFG	+	FALSE
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr2	162849312	G	C	0.00840	DPP4	-	FALSE
chr5	81571669	C	T	0.00143	RPS23	-	FALSE
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr1	39305021	G	T	0.00046	RRAGC	-	FALSE
chr1	22352040	G	T	0.00255	LOC101928043,LINC00339	+,-	FALSE
chr6	31321883	G	A	0.00000		.	FALSE
chr4	17803604	T	C	0.00414	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	179312752	C	T	0.00106	SOAT1	+	FALSE
chr1	45120664	C	T	0.00437	TMEM53	-	FALSE
chr1	45244411	C	A	0.00234	RPS8	+	FALSE
chr3	15113736	T	C	0.00081	RBSN	-	TRUE	AluSz6	SINE,Alu
chr7	123390058	A	G	0.00102		.	FALSE
chr1	11785234	A	G	0.00339		.	FALSE	AluJr	SINE,Alu
chr19	57818376	A	G	0.00031		.	FALSE	AluJr	SINE,Alu
chr3	56654600	C	G	0.00490	CCDC66,FAM208A	+,-	FALSE
chr19	3053116	G	C	0.00276	AES	-	FALSE
chr2	61315734	A	G	0.00396	KIAA1841	+	TRUE	AluSg	SINE,Alu
chrM	9756	G	A	0.00315		.	FALSE
chr3	196670082	A	T	0.00261	NCBP2-AS2	+	FALSE
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr1	19543249	T	C	1.15194E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	16929279	G	A	0.00138	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr6	13790848	T	C	0.00344	MCUR1	-	TRUE	AluSx1	SINE,Alu
chrX	77084038	T	C	0.00265	MAGT1	-	TRUE	AluSz	SINE,Alu
chr9	33466219	A	C	0.00148	NOL6	-	FALSE
chr1	9328255	A	G	0.00729	H6PD	+	TRUE	AluJr	SINE,Alu
chr6	34252328	T	A	0.00062		.	FALSE	(T)n	SINE,Alu
chr3	191110544	T	G	0.00031	CCDC50	+	FALSE	AluSz	SINE,Alu
chr5	141691248	C	T	0.00360	SPRY4	-	FALSE
chr1	65692500	T	C	0.00281	AK4	+	FALSE	(T)n	SINE,Alu
chr3	38296817	G	A	3.46922E-11	OXSR1	+	FALSE
chr1	23636274	G	T	0.00032	HNRNPR	-	FALSE
chr1	145513113	A	G	0.00505	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	19586520	A	G	0.00659	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	21100862	C	A	0.00012	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr1	569803	G	A	0.00695		.	FALSE
chr3	15113733	T	C	0.00228	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	33150642	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr1	16889423	G	C	6.70783E-10	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr1	78142901	T	C	0.00332	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr4	39550564	T	C	0.00996	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	33149376	A	G	0.00424	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	10517992	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr2	55516903	G	A	3.31807E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr2	62095534	T	C	0.00021	CCT4	-	FALSE
chr2	179371305	A	G	0.00696	MIR548N	+	FALSE
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr12	27953264	A	T	0.00688	KLHL42	+	FALSE
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr16	15794312	C	T	0.00796	NDE1	+	FALSE	AluSz	SINE,Alu
chr7	116147752	A	G	0.00031	CAV2	+	FALSE	(AAAAGAAA)n	SINE,Alu
chr20	18468512	T	C	0.00072	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr1	900725	T	G	0.00110	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	86118685	G	A	0.00440	ZNHIT6	-	FALSE
chr15	72635829	A	C	0.00054	HEXA	-	FALSE
chr1	16892279	C	A	0.00326	NBPF1	-	FALSE
chr14	100762690	T	C	0.00461	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr1	44415424	A	G	0.00213	IPO13	+	FALSE
chr1	1662754	T	C	0.00856	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr1	90496700	A	G	0.00486	ZNF326	+	FALSE
chr2	114352238	G	A	8.42668E-06	WASH2P	+	FALSE
chr15	92715131	A	T	0.00306	SLCO3A1	+	FALSE
chr7	128143606	A	G	4.95106E-06		.	FALSE	AluJr4	SINE,Alu
chr1	19943823	C	A	0.00752	MINOS1,MINOS1-NBL1	+	FALSE
chr1	115313039	A	G	0.00895	SIKE1	-	FALSE
chr3	44790624	T	C	0.00150	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	207943325	A	G	0.00158	CD46	+	TRUE	AluSx1	SINE,Alu
chr7	48146025	A	G	0.00106	UPP1	+	TRUE	AluSq	SINE,Alu
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr2	174086940	C	A	0.00047	ZAK,MLK7-AS1	+,-	FALSE	AluJo	SINE,Alu
chr16	1819020	A	T	0.00258	MAPK8IP3	+	FALSE
chr2	37327676	T	C	0.00462		.	FALSE
chr18	47918818	A	G	3.50049E-05	SKA1	+	TRUE	AluJb	SINE,Alu
chr1	24151858	C	T	0.00104	HMGCL	-	FALSE
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu

RBP	UCHL5
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR678MVE
Platform	HiSeq
Pubmed ID	32252787

UCHL5 - Target Gene Network