RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	207219603	T	C	0.00429	YOD1	-	FALSE
chr4	10099340	T	C	0.00000	WDR1	-	FALSE
chr3	176739580	T	C	4.09936E-06	TBL1XR1	-	FALSE
chr1	6283306	T	C	0.00609	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	165998642	T	C	0.00036	TMEM192	-	TRUE	AluSg	SINE,Alu
chr2	203922075	A	G	0.00058	NBEAL1	+	FALSE
chr1	145689611	C	A	0.00104	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr2	114352179	G	A	1.68965E-05	WASH2P	+	FALSE
chr7	116339672	C	T	0.00876	MET	+	FALSE
chr1	206566195	C	T	7.54522E-05	SRGAP2	+	FALSE
chr3	196662641	T	C	0.00059	NCBP2	-	FALSE
chr4	39550978	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	9163402	T	C	4.95479E-05		.	FALSE	AluSp	SINE,Alu
chr3	158547143	G	A	0.00178	MFSD1	+	FALSE
chr5	95130803	T	C	0.00531	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr2	20648961	T	C	0.00304	RHOB	+	FALSE
chr1	154554946	C	G	0.00488	ADAR	-	FALSE
chr1	15905501	G	A	0.00359	AGMAT	-	FALSE
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr5	135515156	G	A	0.00364	SMAD5	+	FALSE
chr1	10518821	T	C	0.00913		.	FALSE	AluSx1	SINE,Alu
chrX	77083915	T	C	0.00075	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	47844500	T	G	0.00596	CMPK1	+	FALSE
chr16	10623566	T	C	0.00019	EMP2	-	TRUE	AluSp	SINE,Alu
chr7	6501820	A	T	0.00288	KDELR2	-	FALSE
chr1	36770600	G	T	0.00792	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	53680090	G	A	0.00321	C1orf123	-	FALSE
chr1	16921146	T	C	0.00382	NBPF1	-	FALSE
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr15	31231255	A	G	0.00027	FAN1,MTMR10	+,-	FALSE
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr1	36642420	T	C	0.00188	MAP7D1	+	FALSE
chr1	161088583	T	G	0.00745	NIT1	+	FALSE
chr1	160062340	G	A	0.00967	IGSF8	-	FALSE
chr2	37327662	T	C	0.00058		.	FALSE
chr1	10519936	T	C	0.00354		.	FALSE	AluJr	SINE,Alu
chr6	43747964	G	A	0.00542	VEGFA	+	FALSE
chr1	36388197	C	T	0.00315	AGO1	+	FALSE
chr1	76227022	A	G	0.00035	ACADM	+	FALSE
chr1	3729587	A	G	0.00580	CEP104	-	FALSE	(AT)n	SINE,Alu
chr1	171509327	G	A	0.00110	PRRC2C	+	FALSE
chr1	32687473	T	G	0.00892	TMEM234,EIF3I	+,-	FALSE
chr5	149363219	A	G	0.00866	SLC26A2	+	FALSE	AluJr	SINE,Alu
chr1	16918734	G	C	0.00600	NBPF1	-	FALSE
chr1	67875011	G	T	0.00359	SERBP1	-	FALSE
chr12	124146100	A	G	4.66106E-08	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	118066459	A	G	1.18472E-05	MAN1A2	+	FALSE
chr1	120164552	G	A	0.00023	ZNF697	-	FALSE
chr3	32524229	G	T	0.00359	CMTM6	-	FALSE
chr7	6501832	A	C	0.00175	KDELR2	-	FALSE
chr1	10519946	T	C	0.00033		.	FALSE	AluJr	SINE,Alu
chr1	201846630	C	A	0.00041	IPO9	+	FALSE	(CA)n	SINE,Alu
chr5	94050487	T	A	0.00380	MCTP1	-	FALSE
chr3	57126614	C	T	0.00358	IL17RD	-	FALSE	AluY	SINE,Alu
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr3	158320703	C	A	0.00841	MLF1	+	FALSE
chr5	134061334	A	G	0.00721	SEC24A	+	FALSE
chr3	160219095	G	A	0.00620	KPNA4	-	FALSE	A-rich	SINE,Alu
chr1	3730332	T	C	6.29937E-05	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	43391823	C	T	0.00718	SLC2A1	-	FALSE
chr2	206982257	T	C	0.00023		.	FALSE	AluSg7	SINE,Alu
chr19	17414126	C	T	0.00029	ABHD8	-	FALSE
chr8	61693942	G	A	0.00350	CHD7	+	FALSE
chr1	145281543	C	T	0.00999	NBPF20,NOTCH2NL	+	FALSE
chr2	74442548	C	T	0.00721		.	FALSE
chr3	12624070	C	T	2.78764E-07	MKRN2	+	FALSE
chr1	244219905	G	T	0.00772	ZBTB18	+	FALSE
chr2	37331565	T	C	0.00121		.	FALSE	AluJb	SINE,Alu
chr5	125961816	A	G	0.00013	PHAX	+	TRUE	FLAM_C	SINE,Alu
chr12	53435627	A	G	0.00133	EIF4B	+	FALSE
chr1	10520684	T	C	0.00389	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	46032974	T	C	0.00196	AKR1A1	+	FALSE
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr22	50745987	C	G	0.00683	PLXNB2	-	FALSE
chr7	2290522	C	T	0.00517	NUDT1	+	FALSE
chr1	203277244	A	G	0.00115	BTG2	+	FALSE
chr2	10586903	A	C	0.00041	ODC1,SNORA80B	-	FALSE
chr1	16945570	A	G	0.00131	CROCCP2	-	FALSE
chr2	29023117	A	T	0.00805	PPP1CB	+	FALSE
chr2	46839477	T	C	0.00033	PIGF	-	FALSE
chr12	6601329	C	T	3.97278E-05	MRPL51	-	FALSE
chr1	10520153	T	C	0.00398		.	FALSE	AluSx	SINE,Alu
chr6	13790888	T	C	0.00442	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr17	38974612	T	C	0.00963	KRT10	-	FALSE
chr17	36936846	C	T	0.00277	PIP4K2B	-	FALSE
chr1	21671943	T	G	0.00471	ECE1	-	FALSE	(GCTCCCG)n	SINE,Alu
chr19	11945631	A	G	0.00091	ZNF440	+	TRUE	AluSp	SINE,Alu
chr5	150578574	A	G	0.00447	CCDC69	-	FALSE
chr15	41591451	A	G	1.78515E-09	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr1	46075663	A	G	0.00240	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	236717926	T	C	0.00029	HEATR1	-	FALSE
chr11	118965479	G	A	0.00682	H2AFX	-	FALSE	G-rich	SINE,Alu
chr1	16905837	G	A	0.00029	NBPF1	-	FALSE
chr2	132481526	C	A	0.00040	C2orf27A	+	FALSE
chr2	170607000	T	A	0.00590	PHOSPHO2-KLHL23,KLHL23	+	FALSE
chr1	19447819	T	C	0.00337	UBR4	-	FALSE
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr1	100655177	G	A	0.00923	DBT	-	FALSE
chr1	570178	G	A	0.00787		.	FALSE
chr1	67874270	G	A	0.00019	SERBP1	-	FALSE
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr1	120165038	A	G	0.00926	ZNF697	-	FALSE
chr5	32586387	T	C	0.00569	SUB1	+	FALSE
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr2	176792535	T	G	0.00211	LNPK	-	FALSE
chr12	56510696	A	T	0.00015	RPL41	+	FALSE
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr1	109818159	G	T	0.00419	CELSR2	+	FALSE
chr5	177576460	C	T	0.00635		.	FALSE
chr2	206982255	T	C	0.00431		.	FALSE	AluSg7	SINE,Alu
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr1	120612037	T	G	0.00044	NOTCH2	-	FALSE	(CGC)n	SINE,Alu
chr1	6282383	T	C	0.00130	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr1	31905886	C	A	0.00026	SERINC2	+	FALSE
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr1	27181647	G	A	0.00103	ZDHHC18	+	FALSE
chr1	932618	C	G	0.00569		.	FALSE
chr6	57034841	G	T	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	179326847	A	G	0.00512	SOAT1	+	TRUE	AluJo	SINE,Alu
chr4	57194712	A	C	0.00399	KIAA1211	+	FALSE
chr1	569492	T	C	0.00336		.	FALSE
chr12	92537721	A	T	0.00057	BTG1	-	FALSE
chr1	10517564	T	C	0.00371		.	FALSE	AluSx1	SINE,Alu
chr1	6257826	T	C	0.00560	RPL22	-	FALSE
chr7	102090451	A	G	0.00360	ORAI2	+	TRUE	AluSz	SINE,Alu
chr1	153587308	C	T	0.00077	S100A14	-	FALSE
chr1	179811337	C	A	0.00670	TOR1AIP2	-	FALSE	AluSp	SINE,Alu
chr1	148556743	G	A	0.00402		.	FALSE
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr1	150939883	A	G	0.00472	CERS2	-	FALSE
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr6	47501448	T	C	0.00017	CD2AP	+	FALSE
chr22	36677546	T	G	0.00197	MYH9	-	FALSE
chr1	2336210	C	T	0.00175	RER1	+	FALSE
chr1	204521616	A	G	0.00455	MDM4	+	TRUE	AluSg	SINE,Alu
chr2	37331037	T	C	0.00538		.	FALSE	AluSx1	SINE,Alu
chr1	52816691	T	C	0.00353	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr12	125513906	C	A	0.00464		.	FALSE	AluSx1	SINE,Alu
chr1	10521172	T	C	0.00178	DFFA	-	TRUE	AluY	SINE,Alu
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr1	161932324	A	G	0.00056	ATF6	+	FALSE
chr2	217366868	A	G	0.00100		.	FALSE	AluSz6	SINE,Alu
chr2	132481245	T	G	0.00382	C2orf27A	+	FALSE
chr2	191745643	A	C	0.00011	GLS	+	FALSE	(GCA)n	SINE,Alu
chr2	175711942	C	T	8.43847E-05	CHN1	-	FALSE
chr1	94660609	C	T	0.00383	ARHGAP29	-	FALSE
chr1	24862649	A	G	0.00074	RCAN3	+	FALSE
chr1	109535116	G	A	0.00013	WDR47	-	FALSE
chr1	85785548	C	T	0.00350	DDAH1	-	FALSE
chr1	10517352	T	C	0.00064		.	FALSE	AluJr	SINE,Alu
chr1	3753136	A	T	0.00088	CEP104	-	FALSE
chr1	93297605	C	G	0.00319	RPL5	+	FALSE
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	175914284	A	G	0.00036	RFWD2	-	FALSE
chr1	144340322	G	T	0.00809	NBPF20,LINC00869	+,-	FALSE
chr12	56510696	A	T	0.00767	RPL41	+	FALSE
chr3	14986111	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr15	83685469	T	C	0.00976	BTBD1	-	FALSE
chr1	9328120	A	G	4.35354E-06	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	19578576	G	A	0.00347	MRTO4	+	FALSE
chr17	65334766	T	C	4.45484E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	28836973	A	G	0.00017	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	10518756	T	C	0.00323		.	FALSE	AluSx1	SINE,Alu
chr20	25428724	A	G	0.00789	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	45976928	G	A	0.00715	PRDX1	-	FALSE
chr1	900505	G	C	0.00388	KLHL17	+	FALSE
chr8	30536554	T	C	0.00023	GSR	-	TRUE	AluSp	SINE,Alu
chr1	19244904	G	A	0.00487	IFFO2	-	FALSE
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr1	36067886	T	C	0.00150	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	164466038	C	A	0.00021	FIGN	-	FALSE
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr1	9163110	T	C	0.00103		.	FALSE	FRAM	SINE,Alu
chr19	4423353	G	A	0.00057	CHAF1A	+	FALSE	GA-rich	SINE,Alu
chr1	16889041	C	T	0.00429	NBPF1	-	FALSE
chr1	19542301	T	C	0.00032	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	158424898	G	A	0.00153		.	FALSE
chr5	52250837	C	T	0.00017		.	FALSE
chr3	37031951	G	A	0.00154	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr2	178406765	T	A	0.00325	AGPS	+	FALSE
chr4	187628395	T	A	0.00000	FAT1	-	FALSE
chr17	65335362	T	C	3.02375E-05	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	53679610	G	A	0.00119	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	156262653	A	C	0.00128	GLMP	-	FALSE
chr1	240255560	G	A	0.00810	FMN2	+	FALSE	(GGC)n	SINE,Alu
chr7	100860467	C	G	0.00267	PLOD3	-	FALSE
chr1	53289892	A	G	0.00505	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	36068325	T	C	3.42972E-06	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	198339541	C	T	0.00465	COQ10B	+	FALSE	(T)n	SINE,Alu
chr1	145509570	A	G	0.00306	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr8	61534428	A	G	0.00274	RAB2A	+	FALSE
chr1	43394612	T	C	0.00154	SLC2A1	-	FALSE
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr1	19542679	T	C	0.00738	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr12	98942805	A	G	0.00058	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	40923019	G	A	0.00019	ZFP69B	+	FALSE
chr12	124146569	A	G	0.00013	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	101443431	C	T	0.00013	SLC30A7	+	FALSE	AluSq2	SINE,Alu
chr6	42855954	A	G	3.50340E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	109465167	T	A	0.00233	GPSM2	+	FALSE
chr7	6063468	G	A	0.00451	EIF2AK1	-	FALSE
chr1	52816612	T	C	0.00890	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	216903621	T	C	0.00611	PECR	-	TRUE	AluSx3	SINE,Alu
chr1	54571374	A	G	0.00916	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr3	136573440	A	G	0.00038	NCK1-AS1,SLC35G2	+,-	FALSE
chr1	120163518	C	T	0.00067	ZNF697	-	FALSE
chr2	37429677	A	G	0.00279	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr4	39550564	T	C	0.00996	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr3	189675270	T	G	0.00039	P3H2	-	FALSE
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr8	56985608	A	T	0.00077	RPS20	-	FALSE
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	120497841	T	C	0.00673	NOTCH2	-	FALSE
chr7	44841931	A	G	0.00054	PPIA	+	TRUE	AluSx	SINE,Alu
chr3	185646406	A	T	0.00023	TRA2B	-	FALSE
chr1	26144435	C	G	0.00129	SEPN1	+	FALSE
chr2	11318235	G	C	0.00911	PQLC3	+	FALSE
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr1	6704652	C	T	1.57063E-06	DNAJC11	-	FALSE
chr1	38155699	T	G	0.00734	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr2	37328042	T	C	6.80414E-06		.	FALSE
chr1	145509569	A	G	0.00405	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr3	196044973	C	T	0.00985	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr7	29962666	T	A	0.00077	SCRN1	-	FALSE
chr1	145688672	A	T	0.00770	NBPF20,NBPF10,RNF115	+	FALSE
chr2	48025764	C	T	0.00810	MSH6	+	FALSE
chr2	24494671	T	C	0.00244	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr2	32535287	A	G	0.00891		.	FALSE	FLAM_C	SINE,Alu
chr6	111348022	A	T	2.41155E-06	RPF2	+	FALSE
chr4	1388115	C	G	0.00682	CRIPAK	+	FALSE	L1MB4	SINE,Alu
chr1	110596569	G	A	0.00867	STRIP1	+	FALSE
chr15	84873635	C	T	0.00059	LOC440300,GOLGA2P7	+,-	FALSE
chr1	229730452	G	A	0.00236	TAF5L	-	FALSE
chr1	204524840	A	G	0.00557	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	234561498	T	C	2.33971E-05	TARBP1	-	FALSE
chr1	186946912	G	A	0.00414	PLA2G4A	+	FALSE

RBP	MATR3
Knock-Method	shRNA
RBP Family	RRM_5
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR792XFP
Platform	HiSeq
Pubmed ID	32252787

MATR3 - Target Gene Network