Dataset Overview
RBPCKAP4
Knock-MethodshRNA
RBP FamilyNon-canonical_RBP
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR952OOP
PlatformHiSeq
Pubmed ID32252787

CKAP4 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of CKAP4
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of CKAP4


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr12120899702TA0.00967GATC,SRSF9+,-FALSE
chr439460539GA0.00323RPL9-FALSE
chr1474526952TC0.00019BBOF1,ALDH6A1+,-FALSEAluJoSINE,Alu
chr227315252GA0.00377KHK+FALSE
chr4108834529GT1.01126E-06SGMS2,LOC101929595+,-FALSE
chr9137330713TG0.00021RXRA+FALSE
chr116011005GC0.00616PLEKHM2+FALSE(GCG)nSINE,Alu
chr76370194CT0.00029FAM220A-FALSE
chr7158679732GA0.00456WDR60+FALSE
chr127107950GA0.00249ARID1A+FALSE
chr185785554CT0.00365DDAH1-FALSE
chr126449327AG0.00330PDIK1L+FALSE
chr310192747AG0.00893VHL+TRUEAluSx1SINE,Alu
chr132508534AG0.00666KHDRBS1+FALSE
chr11597423CT2.12697E-10CDK11B,SLC35E2B-FALSE
chr128566320TC0.00309.FALSEAluSx1SINE,Alu
chr1201846627AT0.00571IPO9+FALSE(CA)nSINE,Alu
chr126451672TC0.00912PDIK1L+FALSE
chr13107196415CT0.00285ARGLU1-FALSE(TTG)nSINE,Alu
chr128825760AG0.00802PHACTR4+TRUEAluSpSINE,Alu
chr1175126524TC0.00901KIAA0040-FALSE
chr1142688506TC4.54862E-05.FALSE
chr1563363388GT0.00096TPM1+FALSE
chr67250960GA0.00889RREB1+FALSE
chr136067851TC0.00269PSMB2-TRUEAluSzSINE,Alu
chr112024235CT0.00395PLOD1+FALSE
chr116889624TC0.00794NBPF1-TRUE
chr1212534448TC0.00926PPP2R5A+FALSE
chr232535287AG0.00891.FALSEFLAM_CSINE,Alu
chr1155829140CG0.00889GON4L-FALSE
chr765844563GA0.00581LINC00174-FALSE
chr642856954AG0.00037RPL7L1+TRUEAluSpSINE,Alu
chr177482325TA5.04428E-06.FALSE
chr116892274AT0.00119NBPF1-FALSE
chr5126171974CT0.00867LMNB1+FALSE
chr1119427687GC0.00823TBX15-FALSE
chr291843471CT0.00105LOC654342-FALSE
chr237328016TC0.00473.FALSE
chr6158505088AG0.00083SYNJ2+FALSE
chr439116911TC0.00303KLHL5+FALSE
chr6111348022AT2.41155E-06RPF2+FALSE
chr237331065TC0.00293.FALSEAluSx1SINE,Alu
chr1176736712AG0.00027ACER3+TRUEAluSzSINE,Alu
chr161727060GA0.00922CRAMP1+FALSE
chr1540955103AG0.00372.FALSEAluJbSINE,Alu
chr11647893CT0.00509CDK11B,CDK11A-FALSE
chr1120164552GA0.00023ZNF697-FALSE
chr314986200GT0.00346FGD5-AS1-FALSEAluSq2SINE,Alu
chr1610625058TC2.66942E-12EMP2-TRUEAluSx3SINE,Alu
chr127180861CT0.00721ZDHHC18+FALSE
chr13729217TC0.00119CEP104-TRUEAluSx3SINE,Alu
chr127732103CT0.00786WASF2-FALSE
chr388104159AC0.00279CGGBP1-FALSE
chr11684346GC0.00504NADK-FALSE
chr1921131571AG0.00120ZNF85+FALSE
chr2176792536GT0.00211LNPK-FALSE
chr5172396725TA0.00014RPL26L1+FALSE
chr2173461888AG0.00110PDK1+TRUEAluJrSINE,Alu
chr1211921723AG4.36683E-06LPGAT1-FALSE
chr1160966376TC0.00996F11R-TRUEAluSgSINE,Alu
chr595236459CT0.00330ELL2-FALSE
chr110518756TC0.00600.FALSEAluSx1SINE,Alu
chr110221302GA0.00119UBE4B+FALSE
chr315113736TC0.00641RBSN-TRUEAluSz6SINE,Alu
chr126308882AG3.99595E-05PAFAH2-FALSE
chr1144822920AT0.00040NBPF20,NBPF9+FALSE
chr136851360GA0.00578STK40-FALSE
chr333893987AG0.00123PDCD6IP+FALSE
chr1179326847AG0.00031SOAT1+TRUEAluJoSINE,Alu
chr5149823794GT0.00204RPS14-FALSE
chr192862457AG0.00974.FALSEAluSpSINE,Alu
chr2128604232AT0.00652POLR2D-FALSE
chr176227022AG0.00035ACADM+FALSE
chr12131356731TC2.96756E-07RAN+FALSE(GGCCGG)nSINE,Alu
chr330735330GT0.00401TGFBR2+FALSE
chr12123346990GT0.00055HIP1R+FALSE
chr2101638888AG0.00127TBC1D8-FALSE
chr1171561203TG0.00119PRRC2C+FALSE
chr129519712TC0.00017MECR-TRUEAluJbSINE,Alu
chr8128944717GT0.00091PVT1+FALSE
chr343098971GT0.00118FAM198A+FALSEL1ME3GSINE,Alu
chr237331929TC0.00518.FALSEL1MC4SINE,Alu
chr1773940167TC0.00035ACOX1-TRUEAluJbSINE,Alu
chr1590819409AG5.75884E-05.FALSEAluSxSINE,Alu
chr133149496AG0.00662SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr124796069AC0.00403NIPAL3+FALSE
chr2239355561AG0.00343ASB1+FALSE
chr1146033815GA0.00307NBPF20,NBPF10,NBPF25P,NBPF11+,-FALSE
chr1142619487AG0.00511.FALSE
chr237479023GA0.00063PRKD3-FALSE
chr2025428587AG0.00018GINS1+TRUEAluJbSINE,Alu
chr128836973AG0.00017SNHG3,RCC1+TRUEAluScSINE,Alu
chr237331077TC0.00937.FALSEAluSx1SINE,Alu
chr1145693958AG3.55543E-06NBPF20,NBPF10+TRUEAluSzSINE,Alu
chr1671765443CT0.00223AP1G1-FALSE
chr887485483GC0.00554RMDN1-FALSE
chr174665493GA0.00128FPGT-TNNI3K,FPGT+FALSE
chr220192696GA0.00400MATN3,LOC101928222+,-FALSE
chr88750467AG0.00131MFHAS1-FALSE
chr1148558269AG0.00744NBPF15+FALSEAluJbSINE,Alu
chr155317685GA0.00121DHCR24-FALSEMIRbSINE,Alu
chr237327662TC0.00022.FALSE
chr119586501AG0.00119MRTO4+TRUEAluSzSINE,Alu
chr229023117AT0.00805PPP1CB+FALSE
chr1725640011AG0.00228WSB1+TRUEAluSxSINE,Alu
chr140219280TC0.00169PPIE+FALSE
chr556177849CG0.00921MAP3K1+FALSE(CAA)nSINE,Alu
chr2238463408CG0.00644MLPH+FALSE
chr116703162AT0.00726MRPL17-FALSE
chr537288767TC0.00928.FALSEFLAM_CSINE,Alu
chr5177577138TC0.00163NHP2-FALSE
chr12133298019AG2.77684E-05PGAM5+TRUEAluJoSINE,Alu
chr1206578650GC0.00159SRGAP2+FALSE
chr153291425AG0.00507ZYG11B+TRUEAluJrSINE,Alu
chr13729587AG0.00580CEP104-FALSE(AT)nSINE,Alu
chr1148251079TC0.00880NBPF8,NBPF14,NBPF9-FALSEL1MC4SINE,Alu
chr23609064GA0.00614RNASEH1-AS1+FALSEMER33SINE,Alu
chr120977533GC0.00234PINK1,PINK1-AS+,-FALSE
chr185785556AC0.00034DDAH1-FALSE
chr140537924GA0.00404CAP1+FALSE(A)nSINE,Alu
chr110518052TC0.00791.FALSEAluJrSINE,Alu
chr236704035CA0.00012CRIM1+FALSE
chr2227597207TC0.00209IRS1-FALSE(TA)nSINE,Alu
chr1242012149CT0.00334EXO1+FALSE
chr147840938AG0.00089CMPK1+FALSE
chr110521238TC0.00797DFFA-TRUEAluYSINE,Alu
chr136067838TC0.00348PSMB2-TRUEAluSzSINE,Alu
chr126755643AG0.00728LIN28A+FALSEAluScSINE,Alu
chr1224621934GC0.00245WDR26-FALSE(GGA)nSINE,Alu
chr128662157AG0.00159MED18+TRUEAluSq2SINE,Alu
chr150883798TC0.00156DMRTA2-FALSE
chr41205667AC0.00990CTBP1-AS,CTBP1+,-FALSE(A)nSINE,Alu
chr11419768AG0.00189ATAD3B+TRUEAluYk2SINE,Alu
chr1474526154TC0.00126BBOF1,ALDH6A1+,-FALSEAluSpSINE,Alu
chr1162497738GC0.00390UHMK1+FALSE
chr1109513497CT0.00186WDR47-FALSE
chr1168220529AG0.00161.FALSEAluSz6SINE,Alu
chr596110613TA0.00993ERAP1-FALSE
chr1179327011AG0.00930SOAT1+TRUE
chr120976032TC0.00010PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr3182614493TC0.00195ATP11B+FALSE
chr652868087TC0.00594ICK-TRUEMER135SINE,Alu
chr579279309TG0.00167MTX3-FALSE
chr1534634033AG0.00939NOP10-FALSE
chr42743678GA0.00170TNIP2-FALSE
chr274333231CT0.00073TET3+FALSE
chr1227845283CA0.00809ZNF678+FALSE
chr2025427756AG0.00396GINS1+TRUEAluSzSINE,Alu
chr29630231CT0.00895ADAM17-FALSE
chr119542455TC0.00048LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr2208619742AG1.70106E-07CCNYL1+TRUEAluJbSINE,Alu
chr1742876791TC0.00461GJC1-TRUEAluSz6SINE,Alu
chr140361783GC0.00023MYCL-FALSE
chr116893686GC0.00386NBPF1-FALSE
chr1155695960AG1.11424E-05DAP3+TRUEAluSpSINE,Alu
chr110519064TC0.00012.FALSEAluSx3SINE,Alu
chr1114515717GA0.00018HIPK1+FALSE
chr4190883001CG0.00319FRG1+FALSE
chr744841589AG0.00469PPIA+TRUEAluJrSINE,Alu
chr72473761TC0.00126CHST12+FALSE(CCGC)nSINE,Alu
chr18045340CA0.00056PARK7+FALSE
chr1749041897TC4.67707E-06SPAG9-TRUEAluSxSINE,Alu
chr5131804838AG0.00036C5orf56+TRUEMLT1DSINE,Alu
chr572801323CA0.00240BTF3+FALSE
chr1758024275AG0.00455RPS6KB1+FALSE
chr195363041CT0.00105CNN3-FALSE
chr345126558CT0.00000CDCP1-FALSE
chr1160966299TC0.00033F11R-TRUEAluSgSINE,Alu
chr119670860AG0.00419CAPZB-FALSE
chr1118472401CT0.00396WDR3+FALSE
chr791630349TA0.00111AKAP9+FALSE
chr136752811CT0.00000THRAP3+FALSE
chr314986080TC4.44089E-16FGD5-AS1-TRUEFLAM_CSINE,Alu
chr1738632679TG0.00044TNS4-FALSE(GT)nSINE,Alu
chr5149361415AG0.00290SLC26A2+TRUE
chr117313654CT0.00886ATP13A2-FALSE
chr19328223AG0.00591H6PD+TRUEAluJrSINE,Alu
chrX54587254AG0.00019GNL3L+TRUEAluSq2SINE,Alu
chr347386061AC8.10198E-06KLHL18+FALSE
chr13730400TC0.00800CEP104-TRUEAluSx3SINE,Alu
chr456236845AG6.76031E-06SRD5A3,SRD5A3-AS1+,-FALSEAluJbSINE,Alu
chr417804879TC0.00863DCAF16-TRUEAluSxSINE,Alu
chr1145689566AG0.00331NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1229652587TC0.00732ABCB10-FALSE
chr1047098568CT0.00178LINC00842-FALSE
chr1213244381GA0.00345RPS6KC1+FALSE
chr1145689566AG0.00918NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1013320236CT0.00011PHYH-FALSE
chr2206983267TC0.00854.FALSEAluJbSINE,Alu
chr271214819AT0.00346TEX261-FALSE
chr5150827307GT0.00708SLC36A1+FALSE
chr1144828688CT0.00024NBPF20,NBPF9+FALSE
chr756079033TC0.00300PSPH-TRUEAluYm1SINE,Alu
chr159120961GA0.00383MYSM1-FALSE
chr140219065CT0.00232PPIE+FALSE
chr577655378TC0.00555SCAMP1-AS1-TRUEAluSx4SINE,Alu
chr9137330709GT6.64722E-05RXRA+FALSE(GCTG)nSINE,Alu
chr116890500GA0.00030NBPF1-FALSE
chr9140709880CT0.00178EHMT1+FALSE
chr16682037GA0.00302PHF13+FALSE
chr729960315CT0.00015SCRN1-FALSE
chr1541590287AG0.00319OIP5-AS1+FALSE
chr330047174AT0.00556RBMS3+FALSE
chr275118737CT0.00154HK2+FALSE
chr398299365TG3.92075E-11CPOX-FALSE
chr237328097TC0.00301.FALSE
chr1118066459AG1.18146E-05MAN1A2+FALSE
chr133086834TC0.00251ZBTB8OS-TRUEAluYSINE,Alu
chr159122059GA0.00476MYSM1-FALSE
chr119542250TC0.00015LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr178414329GA0.00922FUBP1-FALSEA-richSINE,Alu
chr14105270480TG0.00035ZBTB42+FALSE
chr2238285016AG0.00030.FALSEAluSzSINE,Alu
chr1197053373GA0.00124ASPM-FALSE
chr153291408AG0.00021ZYG11B+TRUEAluJrSINE,Alu
chr1109192040TC6.39517E-05HENMT1-TRUEAluJrSINE,Alu
chr29770610AG0.00466YWHAQ-FALSE
chr9137330716AC0.00058RXRA+FALSE
chr19330740GC0.00077H6PD+FALSE
chr224223291AG0.00512UBXN2A+TRUEAluScSINE,Alu
chr4128995640GA0.00567LARP1B+FALSE
chr110517314TC0.00073.FALSEAluJrSINE,Alu
chr119586455AG3.44081E-06MRTO4+TRUEAluSzSINE,Alu
chr128564195TC0.00113ATPIF1+FALSE
chr119542310TC2.12437E-06LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr2209221291TG0.00033PIKFYVE+FALSEAluSxSINE,Alu
chr111190646GA0.00369MTOR-FALSE
chr1148556087GC0.00106.FALSE
chr5145493224AT0.00251LARS-FALSE
chr117199309GA0.00398LOC440570+FALSE
chr28823951AT0.00251ID2+FALSE
chrX54587218AG0.00014GNL3L+TRUEAluSq2SINE,Alu
chr946687845GC0.00389FGF7P6,LOC554249,LOC102724238+,-FALSE
chr185278156CT0.00663.FALSEAluSz6SINE,Alu
chr4190883001CG0.00859FRG1+FALSE
chr1210311392TC0.00177OLR1-FALSE
chr1161932324AG0.00056ATF6+FALSE
chr1197093361GA8.55632E-06ASPM-FALSE
chr2134730108AG0.00680IFNAR1+TRUEAluSg7SINE,Alu
chrX123046695AG0.00054XIAP+TRUEAluSzSINE,Alu
chr315296358AT4.17447E-06SH3BP5,SH3BP5-AS1+,-FALSE
chr11595539TC0.00053CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr764435678TA0.00256ZNF117-FALSE
chr1237063504AG0.00900MTR+FALSEL1ME3FSINE,Alu
chr9132900076TC5.65714E-05GPR107+FALSE
chr5125961509AG0.00141PHAX+TRUEAluSz6SINE,Alu
chr238975954AC0.00381SRSF7-FALSE
chr74809333AG0.00067FOXK1+TRUEAluSx1SINE,Alu
chr3155660773AG0.00592.FALSEAluSzSINE,Alu
chr2112874290AT0.00455TMEM87B+FALSE
chr1145369589TC0.00696NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr165297860AT0.00847RAVER2+FALSE
chr237330540TC0.00854.FALSEAluSq2SINE,Alu
chr1220323448CT0.00223RAB3GAP2-FALSE
chr187573325CT0.00121HS2ST1+FALSE(AT)nSINE,Alu
chr128261661GA0.00872SMPDL3B+FALSE
chr1559428230GA0.00891MYO1E-FALSEMLT1BSINE,Alu
chr2101622888TA7.56266E-05RPL31+FALSE
chr145975628AG0.00413MMACHC+TRUEAluSx4SINE,Alu
chr195658344GA0.00100TMEM56-RWDD3,LOC101928118,TMEM56+,-FALSE
chr827592828GA0.00133CCDC25-FALSE
chr7920724AG0.00328GET4+TRUEAluSx1SINE,Alu
chr19428685TG0.00416SPSB1+FALSE
chr1145273345TC0.00190NBPF20,NOTCH2NL+FALSE
chr1146467146AG0.00510NBPF20,NBPF25P,NBPF12+TRUEL1MC4SINE,Alu
chr126144433TC0.00476SEPN1+FALSE
chr1219671149CT0.00315AEBP2+FALSE
chr191486838GC0.00514ZNF644-FALSE
chr347036756CG0.00091NBEAL2+FALSE
chr194335330AT0.00366DNTTIP2-FALSE
chr1982994TC0.00432AGRN+FALSE
chr46302519GA0.00195WFS1+FALSE
chr2045839074AT0.00019ZMYND8-FALSE(T)nSINE,Alu
chr652267967AC0.00424PAQR8+FALSE
chr1145513017AG3.59549E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr170718278CG0.00663.FALSE
chr1179326418AG0.00626SOAT1+TRUEAluSgSINE,Alu
chr1114940209GT5.13716E-05TRIM33-FALSE(T)nSINE,Alu
chr144423703CT1.21014E-14IPO13+FALSE
chr1180247474TC0.00022.FALSE
chr19642827GA0.00985SLC25A33+FALSE
chr4113197769TC0.00101TIFA-FALSE
chr1225683182CT0.00056ENAH-FALSE
chr1931935TC0.00913.FALSE
chr1288454641AT0.00753CEP290-FALSE
chr4170678993TC3.15742E-05HPF1-FALSE
chr125688276AG0.00015TMEM50A+FALSE
chr116893813AG7.34801E-05NBPF1-FALSE
chr199673276CA0.00085.FALSETigger1SINE,Alu
chr2153512503CT0.00082PRPF40A-FALSE
chr1204521625AG0.00808MDM4+TRUEAluSgSINE,Alu
chr191990445AG0.00784CDC7+FALSELFSINE_VertSINE,Alu
chr110517527TC0.00430.FALSEAluSx1SINE,Alu
chr135649804CA0.00127SFPQ-FALSE
chr1569983GA0.00568.FALSE
chr193603177TC0.00364MTF2+FALSE
chr237327666TC0.00231.FALSE
chr439552022TC0.00840UGDH-AS1,SMIM14+,-FALSEAluSxSINE,Alu
chr11534614TC5.67045E-11FNDC10-FALSE
chr2206862015GA0.00026INO80D-FALSE
chr1183112505TC0.00525LAMC1+FALSE
chr1249745425AG0.00489DNAJC22+TRUEAluSx3SINE,Alu
chr16283264TC0.00284ICMT-TRUEAluSx3SINE,Alu
chr136531781GA0.00288.FALSE
chr4103183510CT0.00718SLC39A8-FALSE
chr273460315CT0.00315PRADC1-FALSE(CGGCGC)nSINE,Alu
chr136067925TC4.53272E-07PSMB2-TRUEAluSzSINE,Alu
chr177556766TA0.00576PIGK-FALSE
chr219908316CT0.00719TEKT4P2-FALSE
chr2238005476CT0.00456COPS8+FALSE
chr110520153TC0.00999.FALSEAluSxSINE,Alu
chr1212459257AG0.00068PPP2R5A+FALSE
chr1210761846AG0.00224MAGOHB-FALSE
chr1145688973AG8.24717E-05NBPF20,NBPF10,RNF115+TRUEAluSc8SINE,Alu
chr116909129TC0.00131NBPF1-FALSE
chr7137612916GC0.00356CREB3L2-FALSE
chr131732601AT0.00479SNRNP40-FALSE

Differential Expression Gene Analysis