RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	17803604	T	C	0.00172	DCAF16	-	TRUE	AluY	SINE,Alu
chr5	140751128	C	G	0.00647	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3	+	FALSE
chr8	42884422	A	G	0.00768	HOOK3	+	TRUE	AluSc	SINE,Alu
chr1	6283264	T	C	5.77123E-05	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	231377081	C	T	0.00895	GNPAT	+	FALSE
chr7	156763332	A	G	0.00090	NOM1	+	TRUE	AluSx	SINE,Alu
chr16	22297295	A	G	0.00749	EEF2K	+	TRUE	AluJr	SINE,Alu
chr1	154323557	C	T	0.00018	ATP8B2	+	FALSE
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	109240643	A	C	0.00608	PRPF38B	+	FALSE
chr1	150939883	A	G	0.00472	CERS2	-	FALSE
chr19	54627915	C	T	0.00015	PRPF31	+	FALSE
chr3	88104159	A	C	0.00279	CGGBP1	-	FALSE
chr1	40539212	C	A	0.00380	PPT1	-	FALSE
chr1	145689717	A	G	3.41980E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr4	113198883	G	T	0.00905	TIFA	-	FALSE
chr1	28825465	A	G	0.00756	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr12	133297904	A	G	8.99170E-13	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	155695985	A	G	0.00031	DAP3	+	TRUE	AluSp	SINE,Alu
chrX	152916235	G	A	0.00015	DUSP9	+	FALSE
chr6	42856039	A	G	1.34846E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr3	197611262	A	G	0.00208		.	FALSE	AluSx1	SINE,Alu
chr3	178741082	A	C	5.87013E-06	ZMAT3	-	FALSE
chr1	46076599	A	G	0.00116	NASP	+	TRUE	AluSx	SINE,Alu
chr1	207221096	G	A	0.00452	YOD1	-	FALSE
chr1	19542679	T	C	0.00738	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	206635244	T	A	0.00188	SRGAP2	+	FALSE
chr2	55516936	A	T	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	198255334	A	T	0.00551		.	FALSE
chr15	33064474	G	C	0.00653	FMN1	-	FALSE
chr1	20977856	T	C	0.00232	PINK1,PINK1-AS	+,-	FALSE
chr2	128951904	A	G	0.00444	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr2	37331037	T	C	0.00026		.	FALSE	AluSx1	SINE,Alu
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr8	11700231	T	C	1.53992E-05	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	36068370	T	C	0.00846	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	184661942	T	G	0.00343	EDEM3	-	FALSE
chr1	10521126	T	C	0.00599	DFFA	-	TRUE	AluY	SINE,Alu
chr1	6283558	A	T	0.00624	ICMT	-	FALSE
chr1	117532372	G	T	0.00678	PTGFRN	+	FALSE
chr1	19670869	A	G	0.00568	CAPZB	-	FALSE
chr1	31351513	G	A	0.00265	SDC3	-	FALSE
chr1	19234103	G	A	0.00014	IFFO2	-	FALSE
chr1	1683565	G	A	0.00269	NADK	-	FALSE
chr1	19578192	G	A	0.00778	MRTO4	+	FALSE
chr3	101405563	A	G	0.00511	RPL24	-	FALSE
chr1	6283264	T	C	0.00284	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	2931174	T	C	0.00211	ADD1	+	FALSE
chr3	16357494	G	A	2.87472E-06	RFTN1	-	FALSE
chr1	245017462	G	A	0.00255	HNRNPU,SNORA100	-	FALSE
chr5	43700242	A	G	0.00932	NNT	+	FALSE
chr2	109401281	T	G	0.00116	RANBP2	+	FALSE
chr6	74304013	T	C	3.72993E-06	SLC17A5	-	TRUE	AluSx3	SINE,Alu
chr1	24798499	T	C	0.00028	NIPAL3	+	FALSE	(T)n	SINE,Alu
chr2	24224000	A	G	0.00464		.	FALSE	AluSp	SINE,Alu
chr2	207027628	A	G	2.96026E-05	EEF1B2	+	FALSE
chr2	55516902	G	A	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	20401859	A	T	0.00023	SDC1	-	FALSE	(A)n	SINE,Alu
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr8	17796338	G	T	4.50000E-10	PCM1	+	FALSE
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr9	136209404	G	A	0.00361	MED22	-	FALSE	(CAGGG)n	SINE,Alu
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr1	2336210	C	T	0.00206	RER1	+	FALSE
chr1	19232211	G	A	0.00552	IFFO2	-	FALSE	(GT)n	SINE,Alu
chr3	49395691	C	T	0.00037	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr1	19542679	T	C	0.00584	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr1	25889176	C	T	3.50303E-06	LDLRAP1	+	FALSE
chr1	28573293	G	A	0.00059		.	FALSE
chr21	34729931	A	G	0.00040	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	15818090	T	C	0.00089	CASP9	-	TRUE	AluJb	SINE,Alu
chr6	42856105	A	G	0.00972	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	9629293	T	G	0.00426	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr7	75163757	T	C	0.00448	HIP1	-	FALSE	AluSx1	SINE,Alu
chr1	47716039	A	G	0.00863	STIL	-	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr2	238253065	C	T	0.00914	COL6A3	-	FALSE
chr19	4654601	A	G	0.00016	TNFAIP8L1	+	TRUE	AluJb	SINE,Alu
chr1	8413129	G	A	0.00040	RERE	-	FALSE
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr1	9162223	T	C	0.00586		.	FALSE	AluSx	SINE,Alu
chr3	12628920	G	C	0.00036	RAF1	-	FALSE
chr16	81064494	A	G	8.13539E-06	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	990773	C	T	0.00486	AGRN	+	FALSE
chr1	86049389	T	A	0.00420	CYR61	+	FALSE
chr11	65404869	G	T	1.77375E-05	PCNX3	+	FALSE
chr6	31947917	C	T	0.00670		.	FALSE
chr18	6986227	G	A	3.73397E-05	LAMA1	-	FALSE
chr2	55462747	T	A	0.00163	RPS27A	+	FALSE
chr1	115259341	A	C	2.70927E-07	NRAS	-	FALSE
chr1	220323448	C	T	0.00985	RAB3GAP2	-	FALSE
chr1	179327010	A	G	0.00085	SOAT1	+	TRUE
chr3	10192825	A	G	0.00042	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr11	769459	T	C	0.00082	PDDC1	-	TRUE	AluSq2	SINE,Alu
chr2	206480819	C	T	0.00663	PARD3B	+	FALSE
chr3	100083426	C	T	0.00908	TOMM70	-	FALSE	FAM	SINE,Alu
chr3	197400501	C	G	0.00011	RUBCN	-	FALSE
chr3	65341374	T	A	0.00029	MAGI1	-	FALSE
chr1	10520154	T	C	0.00021		.	FALSE	AluSx	SINE,Alu
chr2	675831	G	T	0.00731	TMEM18	-	FALSE
chr1	33086812	T	C	0.00812		.	FALSE	AluY	SINE,Alu
chr1	145112414	T	C	0.00079	NBPF20,SEC22B	+	FALSE
chr1	93803490	T	C	0.00572	CCDC18-AS1	-	FALSE	AluJr	SINE,Alu
chr2	206983138	T	C	0.00669		.	FALSE	AluJb	SINE,Alu
chr4	57326875	A	G	0.00797	PAICS	+	TRUE	AluSx1	SINE,Alu
chr3	52581295	G	A	1.21436E-06	PBRM1	-	FALSE
chr1	6683578	T	C	0.00151	PHF13	+	FALSE
chr1	95658346	T	A	0.00098	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr1	32661600	C	T	0.00235	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	155695968	A	G	0.00017	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	17803748	T	A	0.00859	DCAF16	-	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr8	30536410	T	C	3.13735E-05	GSR	-	TRUE	AluSp	SINE,Alu
chr1	42693597	A	G	0.00106	FOXJ3	-	FALSE
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	228675570	G	C	0.00298	RNF187	+	FALSE
chr6	46128910	A	G	0.00782	ENPP5	-	FALSE	(GT)n	SINE,Alu
chr1	212459257	A	G	0.00068	PPP2R5A	+	FALSE
chr1	150281017	A	G	0.00057	MRPS21	+	TRUE	AluSz	SINE,Alu
chr1	145289875	T	C	0.00160	NBPF20	+	FALSE	MIR	SINE,Alu
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr5	139931628	A	C	0.00804	SRA1	-	FALSE
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr11	94801635	G	T	0.00844	SRSF8	+	FALSE
chr1	23636278	A	T	0.00121	HNRNPR	-	FALSE
chr1	16933753	G	A	0.00740	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	171558516	C	T	4.87297E-05	PRRC2C	+	FALSE
chr17	49041897	T	C	4.67707E-06	SPAG9	-	TRUE	AluSx	SINE,Alu
chr9	125866693	C	T	0.00255	RABGAP1	+	FALSE
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	889183	C	T	3.20836E-06	NOC2L	-	FALSE
chr1	144932086	G	C	0.00997	NBPF20,PDE4DIP	+,-	FALSE
chr1	24296869	G	T	0.00902		.	FALSE	AluSg	SINE,Alu
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr6	29704336	G	A	0.00207		.	FALSE	L1ME3A	SINE,Alu
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr6	31324705	A	C	0.00179		.	FALSE
chr1	114443608	A	G	0.00147	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	31532312	C	T	0.00215	PUM1	-	FALSE
chr2	20097874	T	C	0.00769	TTC32	-	FALSE
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr1	19586520	A	G	0.00846	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	109818270	C	T	0.00996	CELSR2	+	FALSE
chr1	19543465	T	C	0.00709	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	1595540	T	C	0.00048	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chr3	57882601	C	T	0.00987	SLMAP	+	FALSE
chr1	109747415	A	G	0.00549	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr3	24019977	A	C	0.00281	NR1D2	+	FALSE
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	65299564	G	T	0.00664	JAK1	-	FALSE
chr1	3371371	C	G	0.00367	ARHGEF16	+	FALSE
chr1	145322843	C	T	0.00428	NBPF20,NBPF10	+	FALSE
chr17	73940888	T	C	2.69053E-06	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	36322433	G	A	0.00663	AGO4	+	FALSE
chr2	91843429	G	A	0.00037	LOC654342	-	FALSE
chr16	15023271	G	A	0.00403		.	FALSE
chr1	109746728	A	G	0.00171	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr10	47098568	C	T	0.00178	LINC00842	-	FALSE
chr3	179117270	T	C	0.00478	GNB4	-	TRUE	AluSz	SINE,Alu
chr12	98943182	A	G	1.41026E-08	TMPO	+	TRUE	AluSz	SINE,Alu
chr5	256514	G	C	0.00198	SDHA	+	FALSE
chr12	54526562	A	T	0.00119	LOC400043	+	FALSE	L2a	SINE,Alu
chr1	242251696	C	T	0.00335	PLD5	-	FALSE
chr14	103941379	C	A	0.00705	MARK3	+	FALSE
chr1	85733095	G	A	0.00651	BCL10	-	FALSE
chr1	6314171	G	A	0.00855	GPR153	-	FALSE
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr1	211917176	C	T	0.00498	LPGAT1	-	FALSE
chr2	38522138	G	T	0.00769	ATL2	-	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr10	51612914	T	C	0.00063	TIMM23B,TIMM23	+,-	FALSE
chr12	25360465	G	A	0.00074	KRAS	-	FALSE
chr15	41597574	A	G	2.24597E-05		.	FALSE	AluSz6	SINE,Alu
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr2	128601556	T	C	3.22117E-06		.	FALSE	AluJr	SINE,Alu
chr2	37479023	G	A	0.00063	PRKD3	-	FALSE
chr2	24223256	A	G	0.00711	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr1	89299658	G	A	0.00779	PKN2	+	FALSE
chr5	131804838	A	G	0.00036	C5orf56	+	TRUE	MLT1D	SINE,Alu
chr1	10519936	T	C	0.00029		.	FALSE	AluJr	SINE,Alu
chr3	112320485	T	C	0.00107	LINC01279	-	TRUE	AluJb	SINE,Alu
chr1	16932428	C	G	0.00017	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr15	90820068	A	G	0.00194		.	FALSE	AluY	SINE,Alu
chr1	109239334	A	T	0.00035	PRPF38B	+	FALSE
chr1	209602381	G	A	0.00075	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr1	3753136	A	T	0.00088	CEP104	-	FALSE
chr3	45721922	A	G	0.00181	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr20	10036845	A	G	0.00110	SNAP25-AS1,ANKEF1	+,-	FALSE
chr1	54691922	T	A	0.00415	SSBP3	-	FALSE
chr1	16890130	A	C	0.00753	NBPF1	-	FALSE
chr6	44417142	A	G	0.00020	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr1	9160982	T	C	0.00350		.	FALSE	AluJb	SINE,Alu
chr1	10521238	T	C	0.00232	DFFA	-	TRUE	AluY	SINE,Alu
chr2	85621889	C	T	0.00366	CAPG	-	FALSE
chr3	12877522	A	T	0.00956	RPL32	-	FALSE
chr19	19793876	A	G	0.00080	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr4	57326291	A	G	0.00017	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	105964472	C	T	0.00398	C2orf49	+	FALSE	(TTTCTCC)n	SINE,Alu
chr1	47840938	A	G	0.00089	CMPK1	+	FALSE
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr6	36894341	G	A	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	42644770	C	T	1.21495E-06	FOXJ3	-	FALSE
chr5	139931632	C	G	0.00052	SRA1	-	FALSE
chr1	28835934	A	G	0.00566	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr2	10908893	A	G	0.00087	ATP6V1C2	+	FALSE
chr1	46075783	A	G	0.00755	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	16945227	G	T	0.00353	CROCCP2	-	FALSE
chr1	148558269	A	G	0.00744	NBPF15	+	FALSE	AluJb	SINE,Alu
chr1	10521170	T	C	0.00538	DFFA	-	TRUE	AluY	SINE,Alu
chr5	37291386	T	C	1.33550E-08		.	FALSE	AluSx3	SINE,Alu
chr1	93617403	T	G	0.00053	TMED5	-	FALSE
chr1	89237556	C	T	0.00840	PKN2	+	FALSE
chr2	128060859	T	A	0.00016	MAP3K2	-	FALSE
chr1	146649940	C	T	1.24118E-05	PDIA3P1	+	FALSE
chr1	36068295	T	C	0.00910	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	46774783	A	G	1.06423E-10	UQCRH	+	FALSE	(AGG)n	SINE,Alu
chr7	5107572	A	C	0.00563	RBAK-RBAKDN,RBAK	+	FALSE	L1ME3A	SINE,Alu
chr1	33066960	A	G	0.00079	ZBTB8A	+	TRUE	AluSq4	SINE,Alu
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr17	72206017	T	A	6.66319E-05	RPL38	+	FALSE
chr16	48387215	A	G	0.00864	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr6	153314040	G	A	0.00041	MTRF1L	-	FALSE
chr1	27332852	C	T	0.00829	FAM46B	-	FALSE

RBP	SF3A3
Knock-Method	shRNA
RBP Family	SF3a60_bindingd
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR454KYR
Platform	HiSeq
Pubmed ID	32252787

SF3A3 - Target Gene Network